RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 ART3Q13508 389 aa10.75□□□□□ -0.69
COL4A6-208ENST00000538570 SLC12A1Q13621 1099 aa10.75□□□□□ -0.69
COL4A6-208ENST00000538570 RPS6KC1Q96S38 1066 aa10.75□□□□□ -0.69
COL4A6-208ENST00000538570 NRBP1Q9UHY1 535 aa10.75□□□□□ -0.69
COL4A6-208ENST00000538570 TYW5A2RUC4 315 aaKnown RBP10.74□□□□□ -0.69
COL4A6-208ENST00000538570 IKBKBO14920 756 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 HNRNPDLO14979 420 aaKnown RBP10.74□□□□□ -0.69
COL4A6-208ENST00000538570 ARHGEF9O43307 516 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 WBP4O75554 376 aaKnown RBP10.74□□□□□ -0.69
COL4A6-208ENST00000538570 FGAP02671 866 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 THOC5Q13769 683 aaKnown RBP10.74□□□□□ -0.69
COL4A6-208ENST00000538570 KRT80Q6KB66 452 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 PIP4K2CQ8TBX8 421 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 SSH3Q8TE77 659 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 NRBF2Q96F24 287 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 AK8Q96MA6 479 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 FAM135BQ49AJ0 1406 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 ZMYND10O75800 440 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 HSPA6P17066 643 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 EEF1DP29692 281 aaKnown RBP10.74□□□□□ -0.69
COL4A6-208ENST00000538570 TRAPPC10P48553 1259 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 MAN2A1Q16706 1144 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 CAPRIN2Q6IMN6 1127 aaKnown RBP10.74□□□□□ -0.69
COL4A6-208ENST00000538570 PARD6BQ9BYG5 372 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 SLC38A10Q9HBR0 1119 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 PALD1Q9ULE6 856 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 MAST1Q9Y2H9 1570 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 TOM1L1O75674 476 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 XPAP23025 273 aaPredicted RBP10.74□□□□□ -0.69
COL4A6-208ENST00000538570 EEF1B2P24534 225 aaKnown RBP10.74□□□□□ -0.69
COL4A6-208ENST00000538570 GYS2P54840 703 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 DNAAF3Q8N9W5 541 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 ACCSQ96QU6 501 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 SERPINI1Q99574 410 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 SEPT9Q9UHD8 586 aaPredicted RBP10.74□□□□□ -0.69
COL4A6-208ENST00000538570 ABCC12Q96J65 1359 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 COBLO75128 1261 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 ATP2B4P23634 1241 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 C10orf76Q5T2E6 689 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 ZNF658Q5TYW1 1059 aaPredicted RBP10.74□□□□□ -0.69
COL4A6-208ENST00000538570 SLFN13Q68D06 897 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 CCNYQ8ND76 341 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 PGBD1Q96JS3 809 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 TTC1Q99614 292 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 PCDHA4Q9UN74 947 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 PCDHA5Q9Y5H7 936 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 BTDP43251 543 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 DHX9Q08211 1270 aaKnown RBP10.74□□□□□ -0.69
COL4A6-208ENST00000538570 PABPC4Q13310 644 aaKnown RBP eCLIP10.74□□□□□ -0.69
COL4A6-208ENST00000538570 NNTQ13423 1086 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 DCAF15Q66K64 600 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 NOP9Q86U38 636 aaKnown RBP10.74□□□□□ -0.69
COL4A6-208ENST00000538570 FAM186BQ8IYM0 893 aa10.74□□□□□ -0.69
COL4A6-208ENST00000538570 CACTINQ8WUQ7 758 aaKnown RBP10.74□□□□□ -0.69
COL4A6-208ENST00000538570 ABCC4O15439 1325 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 SLC39A14Q15043 492 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 DARS2Q6PI48 645 aaKnown RBP10.73□□□□□ -0.69
COL4A6-208ENST00000538570 MRPL47Q9HD33 250 aaKnown RBP10.73□□□□□ -0.69
COL4A6-208ENST00000538570 FIS1Q9Y3D6 152 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 GYG1P46976 350 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 IGBP1P78318 339 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 TSPY1Q01534 308 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 ALS2CLQ60I27 953 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 ATG16L1Q676U5 607 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 ZNF449Q6P9G9 518 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 ENO4A6NNW6 628 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 MED7O43513 233 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 MOCS3O95396 460 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 FMNL1O95466 1100 aaPredicted RBP10.73□□□□□ -0.69
COL4A6-208ENST00000538570 GOLGA8FQ08AF8 430 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 GOLGA8DPQ0D2H9 430 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 GADL1Q6ZQY3 521 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 NCAPG2Q86XI2 1143 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 TMCO5AQ8N6Q1 288 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 GIMAP4Q9NUV9 329 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 SLC4A7Q9Y6M7 1214 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 CCDC151A5D8V7 595 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 SPDYE2BA6NHP3 402 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 TMEM232C9JQI7 657 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 SPDYE6P0CI01 402 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 ARL4AP40617 200 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 BCAMP50895 628 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 ZNF496Q96IT1 587 aaPredicted RBP10.73□□□□□ -0.69
COL4A6-208ENST00000538570 CNGB3Q9NQW8 809 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 MID2Q9UJV3 735 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 PCDHA1Q9Y5I3 950 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 KIF21AQ7Z4S6 1674 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 TCP10L2B9ZVM9 353 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.73□□□□□ -0.69
COL4A6-208ENST00000538570 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.73□□□□□ -0.69
COL4A6-208ENST00000538570 CEP19Q96LK0 163 aa10.73□□□□□ -0.69
COL4A6-208ENST00000538570 NEK2P51955 445 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 ACTN3Q08043 901 aaPredicted RBP10.72□□□□□ -0.69
COL4A6-208ENST00000538570 TBC1D1Q86TI0 1168 aaPredicted RBP10.72□□□□□ -0.69
COL4A6-208ENST00000538570 SRRM1Q8IYB3 904 aaKnown RBP10.72□□□□□ -0.69
COL4A6-208ENST00000538570 KCTD6Q8NC69 237 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 GDAP1Q8TB36 358 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 DEPDC1BQ8WUY9 529 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 SH3GL2Q99962 352 aa10.72□□□□□ -0.69
COL4A6-208ENST00000538570 TRIM15Q9C019 465 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms