RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 NOP56O00567 594 aaKnown RBP16.93■□□□□ 0.3
USP28-204ENST00000537642 ADAMTS3O15072 1205 aa16.93■□□□□ 0.3
USP28-204ENST00000537642 LGALS2P05162 132 aa16.93■□□□□ 0.3
USP28-204ENST00000537642 KCNA2P16389 499 aa16.93■□□□□ 0.3
USP28-204ENST00000537642 AP3B2Q13367 1082 aa16.93■□□□□ 0.3
USP28-204ENST00000537642 PSRC1Q6PGN9 363 aaPredicted RBP16.93■□□□□ 0.3
USP28-204ENST00000537642 C7orf31Q8N865 590 aa16.93■□□□□ 0.3
USP28-204ENST00000537642 CDHR1Q96JP9 859 aa16.93■□□□□ 0.3
USP28-204ENST00000537642 SLC26A6Q9BXS9 759 aa16.93■□□□□ 0.3
USP28-204ENST00000537642 ANO3Q9BYT9 981 aa16.93■□□□□ 0.3
USP28-204ENST00000537642 ZMYND12Q9H0C1 365 aa16.93■□□□□ 0.3
USP28-204ENST00000537642 GLT8D2Q9H1C3 349 aa16.93■□□□□ 0.3
USP28-204ENST00000537642 JADE2Q9NQC1 790 aa16.93■□□□□ 0.3
USP28-204ENST00000537642 NOD1Q9Y239 953 aa16.93■□□□□ 0.3
USP28-204ENST00000537642 ESYT2A0FGR8 921 aa16.92■□□□□ 0.3
USP28-204ENST00000537642 ANAPC15P60006 121 aa16.92■□□□□ 0.3
USP28-204ENST00000537642 SMAD3P84022 425 aaKnown RBP16.92■□□□□ 0.3
USP28-204ENST00000537642 AKAP17AQ02040 695 aaKnown RBP16.92■□□□□ 0.3
USP28-204ENST00000537642 SP4Q02446 784 aa16.92■□□□□ 0.3
USP28-204ENST00000537642 MTMR1Q13613 665 aa16.92■□□□□ 0.3
USP28-204ENST00000537642 HIC1Q14526 733 aa16.92■□□□□ 0.3
USP28-204ENST00000537642 RASIP1Q5U651 963 aa16.92■□□□□ 0.3
USP28-204ENST00000537642 DEFB123Q8N688 67 aa16.92■□□□□ 0.3
USP28-204ENST00000537642 GIMAP8Q8ND71 665 aaPredicted RBP16.92■□□□□ 0.3
USP28-204ENST00000537642 DHX38Q92620 1227 aaKnown RBP16.92■□□□□ 0.3
USP28-204ENST00000537642 MXRA8Q9BRK3 442 aa16.92■□□□□ 0.3
USP28-204ENST00000537642 H3BRB1 525 aa16.91■□□□□ 0.3
USP28-204ENST00000537642 PITPNM1O00562 1244 aa16.91■□□□□ 0.3
USP28-204ENST00000537642 SREBF1P36956 1147 aa16.91■□□□□ 0.3
USP28-204ENST00000537642 ZNF200P98182 395 aaPredicted RBP16.91■□□□□ 0.3
USP28-204ENST00000537642 STK3Q13188 491 aa16.91■□□□□ 0.3
USP28-204ENST00000537642 BFSP2Q13515 415 aa16.91■□□□□ 0.3
USP28-204ENST00000537642 JAKMIP3Q5VZ66 844 aa16.91■□□□□ 0.3
USP28-204ENST00000537642 CYP2W1Q8TAV3 490 aa16.91■□□□□ 0.3
USP28-204ENST00000537642 CCDC12Q8WUD4 166 aaPredicted RBP16.91■□□□□ 0.3
USP28-204ENST00000537642 HERVK_113Q902F9 699 aa16.91■□□□□ 0.3
USP28-204ENST00000537642 IL17RAQ96F46 866 aa16.91■□□□□ 0.3
USP28-204ENST00000537642 TUT1Q9H6E5 874 aaKnown RBP16.91■□□□□ 0.3
USP28-204ENST00000537642 C6orf50Q9HD87 102 aa16.91■□□□□ 0.3
USP28-204ENST00000537642 PKD2L1Q9P0L9 805 aa16.91■□□□□ 0.3
USP28-204ENST00000537642 TET1Q8NFU7 2136 aa16.91■□□□□ 0.3
USP28-204ENST00000537642 MAFGO15525 162 aa16.9■□□□□ 0.3
USP28-204ENST00000537642 SEC24BO95487 1268 aa16.9■□□□□ 0.3
USP28-204ENST00000537642 FGBP02675 491 aa16.9■□□□□ 0.3
USP28-204ENST00000537642 IQCF3P0C7M6 154 aa16.9■□□□□ 0.3
USP28-204ENST00000537642 UTP14CQ5TAP6 766 aaKnown RBP16.9■□□□□ 0.3
USP28-204ENST00000537642 FAM109BQ6ICB4 259 aaPredicted RBP16.9■□□□□ 0.3
USP28-204ENST00000537642 TRIM50Q86XT4 487 aa16.9■□□□□ 0.3
USP28-204ENST00000537642 RPUSD2Q8IZ73 545 aaKnown RBP16.9■□□□□ 0.3
USP28-204ENST00000537642 RETREG2Q8NC44 543 aa16.9■□□□□ 0.3
USP28-204ENST00000537642 KCNH7Q9NS40 1196 aa16.9■□□□□ 0.3
USP28-204ENST00000537642 VPS54Q9P1Q0 977 aa16.9■□□□□ 0.3
USP28-204ENST00000537642 GSTTP1A0A1W2PQM5 241 aa16.89■□□□□ 0.29
USP28-204ENST00000537642 ARP10275 920 aa16.89■□□□□ 0.29
USP28-204ENST00000537642 HOXC8P31273 242 aa16.89■□□□□ 0.29
USP28-204ENST00000537642 ARHGAP4P98171 946 aa16.89■□□□□ 0.29
USP28-204ENST00000537642 SSRP1Q08945 709 aaKnown RBP16.89■□□□□ 0.29
USP28-204ENST00000537642 RBL2Q08999 1139 aa16.89■□□□□ 0.29
USP28-204ENST00000537642 CEP55Q53EZ4 464 aa16.89■□□□□ 0.29
USP28-204ENST00000537642 OTOP2Q7RTS6 562 aa16.89■□□□□ 0.29
USP28-204ENST00000537642 DEFB128Q7Z7B8 93 aa16.89■□□□□ 0.29
USP28-204ENST00000537642 REXO1Q8N1G1 1221 aaKnown RBP16.89■□□□□ 0.29
USP28-204ENST00000537642 CAGE1Q8TC20 777 aa16.89■□□□□ 0.29
USP28-204ENST00000537642 CRYGNQ8WXF5 182 aa16.89■□□□□ 0.29
USP28-204ENST00000537642 WNT8BQ93098 351 aa16.89■□□□□ 0.29
USP28-204ENST00000537642 MTMR10Q9NXD2 777 aa16.89■□□□□ 0.29
USP28-204ENST00000537642 CXXC1Q9P0U4 656 aaPredicted RBP16.89■□□□□ 0.29
USP28-204ENST00000537642 KAT6AQ92794 2004 aa16.89■□□□□ 0.29
USP28-204ENST00000537642 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.88■□□□□ 0.29
USP28-204ENST00000537642 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.88■□□□□ 0.29
USP28-204ENST00000537642 MEIS1O00470 390 aa16.88■□□□□ 0.29
USP28-204ENST00000537642 CPLX1O14810 134 aa16.88■□□□□ 0.29
USP28-204ENST00000537642 PFKMP08237 780 aa16.88■□□□□ 0.29
USP28-204ENST00000537642 SMIM10L2AP0DMW4 78 aa16.88■□□□□ 0.29
USP28-204ENST00000537642 SMIM10L2BP0DMW5 78 aa16.88■□□□□ 0.29
USP28-204ENST00000537642 GNA11P29992 359 aa16.88■□□□□ 0.29
USP28-204ENST00000537642 RFC2P35250 354 aa16.88■□□□□ 0.29
USP28-204ENST00000537642 TCF7P36402 384 aaPredicted RBP16.88■□□□□ 0.29
USP28-204ENST00000537642 PTK7Q13308 1070 aa16.88■□□□□ 0.29
USP28-204ENST00000537642 TRIM71Q2Q1W2 868 aaKnown RBP16.88■□□□□ 0.29
USP28-204ENST00000537642 TRIM22Q8IYM9 498 aa16.88■□□□□ 0.29
USP28-204ENST00000537642 CCDC155Q8N6L0 562 aa16.88■□□□□ 0.29
USP28-204ENST00000537642 CCDC148Q8NFR7 591 aa16.88■□□□□ 0.29
USP28-204ENST00000537642 RASGRP4Q8TDF6 673 aa16.88■□□□□ 0.29
USP28-204ENST00000537642 AFAP1L1Q8TED9 768 aa16.88■□□□□ 0.29
USP28-204ENST00000537642 SEPT1Q8WYJ6 367 aa16.88■□□□□ 0.29
USP28-204ENST00000537642 TPCN1Q9ULQ1 816 aa16.88■□□□□ 0.29
USP28-204ENST00000537642 C17orf102A2RUQ5 167 aa16.87■□□□□ 0.29
USP28-204ENST00000537642 GRXCR1A8MXD5 290 aa16.87■□□□□ 0.29
USP28-204ENST00000537642 EIF5BO60841 1220 aaKnown RBP16.87■□□□□ 0.29
USP28-204ENST00000537642 CYP3A4P08684 503 aa16.87■□□□□ 0.29
USP28-204ENST00000537642 CKBP12277 381 aa16.87■□□□□ 0.29
USP28-204ENST00000537642 SELPP16109 830 aa16.87■□□□□ 0.29
USP28-204ENST00000537642 ZNF76P36508 570 aa16.87■□□□□ 0.29
USP28-204ENST00000537642 AK2P54819 239 aa16.87■□□□□ 0.29
USP28-204ENST00000537642 SCRN1Q12765 414 aa16.87■□□□□ 0.29
USP28-204ENST00000537642 GPNMBQ14956 572 aa16.87■□□□□ 0.29
USP28-204ENST00000537642 ZNF697Q5TEC3 545 aa16.87■□□□□ 0.29
USP28-204ENST00000537642 MCTP2Q6DN12 878 aa16.87■□□□□ 0.29
USP28-204ENST00000537642 NIPA1Q7RTP0 329 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms