RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.45□□□□□ -1.22
SYNE1-232ENST00000535081 ANAPC16Q96DE5 110 aa7.45□□□□□ -1.22
SYNE1-232ENST00000535081 EPB41L1Q9H4G0 881 aa7.45□□□□□ -1.22
SYNE1-232ENST00000535081 CLDND1Q9NY35 253 aa7.45□□□□□ -1.22
SYNE1-232ENST00000535081 ZDHHC9Q9Y397 364 aa7.45□□□□□ -1.22
SYNE1-232ENST00000535081 LCP1P13796 627 aa7.44□□□□□ -1.22
SYNE1-232ENST00000535081 CRB2Q5IJ48 1285 aa7.44□□□□□ -1.22
SYNE1-232ENST00000535081 NT5DC4Q86YG4 428 aa7.44□□□□□ -1.22
SYNE1-232ENST00000535081 PHOSPHO1Q8TCT1 267 aa7.44□□□□□ -1.22
SYNE1-232ENST00000535081 LRP2BPQ9P2M1 347 aa7.44□□□□□ -1.22
SYNE1-232ENST00000535081 ADAM29Q9UKF5 820 aa7.44□□□□□ -1.22
SYNE1-232ENST00000535081 HS3ST3A1Q9Y663 406 aa7.44□□□□□ -1.22
SYNE1-232ENST00000535081 COL6A1P12109 1028 aa7.43□□□□□ -1.22
SYNE1-232ENST00000535081 KCNJ6P48051 423 aa7.43□□□□□ -1.22
SYNE1-232ENST00000535081 KLF10Q13118 480 aa7.43□□□□□ -1.22
SYNE1-232ENST00000535081 SF1Q15637 639 aaKnown RBP7.43□□□□□ -1.22
SYNE1-232ENST00000535081 SV2CQ496J9 727 aa7.43□□□□□ -1.22
SYNE1-232ENST00000535081 Q8TCH9 128 aa7.43□□□□□ -1.22
SYNE1-232ENST00000535081 SMOC1Q9H4F8 434 aa7.43□□□□□ -1.22
SYNE1-232ENST00000535081 HSPBP1Q9NZL4 362 aa7.43□□□□□ -1.22
SYNE1-232ENST00000535081 RBPJLQ9UBG7 517 aa7.43□□□□□ -1.22
SYNE1-232ENST00000535081 TESMINQ9Y4I5 508 aa7.43□□□□□ -1.22
SYNE1-232ENST00000535081 MAFKO60675 156 aa7.42□□□□□ -1.22
SYNE1-232ENST00000535081 GFRA1P56159 465 aa7.42□□□□□ -1.22
SYNE1-232ENST00000535081 C6orf15Q6UXA7 325 aaPredicted RBP7.42□□□□□ -1.22
SYNE1-232ENST00000535081 RALYLQ86SE5 291 aaKnown RBP7.42□□□□□ -1.22
SYNE1-232ENST00000535081 NUDT10Q8NFP7 164 aa7.42□□□□□ -1.22
SYNE1-232ENST00000535081 NUDT11Q96G61 164 aa7.42□□□□□ -1.22
SYNE1-232ENST00000535081 CCDC140Q96MF4 163 aa7.42□□□□□ -1.22
SYNE1-232ENST00000535081 TMCO4Q5TGY1 634 aa7.41□□□□□ -1.22
SYNE1-232ENST00000535081 ASH2LQ9UBL3 628 aa7.41□□□□□ -1.22
SYNE1-232ENST00000535081 KLHL18O94889 574 aa7.4□□□□□ -1.22
SYNE1-232ENST00000535081 CNOT4O95628 575 aaKnown RBP7.4□□□□□ -1.22
SYNE1-232ENST00000535081 HDLBPQ00341 1268 aaKnown RBP7.4□□□□□ -1.22
SYNE1-232ENST00000535081 VASNQ6EMK4 673 aa7.4□□□□□ -1.22
SYNE1-232ENST00000535081 DENND5AQ6IQ26 1287 aa7.4□□□□□ -1.22
SYNE1-232ENST00000535081 CYP4F22Q6NT55 531 aa7.4□□□□□ -1.22
SYNE1-232ENST00000535081 PROSER1Q86XN7 944 aa7.4□□□□□ -1.22
SYNE1-232ENST00000535081 DTX3Q8N9I9 347 aa7.4□□□□□ -1.22
SYNE1-232ENST00000535081 TMEM145Q8NBT3 493 aa7.4□□□□□ -1.22
SYNE1-232ENST00000535081 TTLL11Q8NHH1 800 aa7.4□□□□□ -1.22
SYNE1-232ENST00000535081 SEC61A2Q9H9S3 476 aa7.4□□□□□ -1.22
SYNE1-232ENST00000535081 DLL4Q9NR61 685 aa7.4□□□□□ -1.22
SYNE1-232ENST00000535081 ING1Q9UK53 422 aaPredicted RBP7.4□□□□□ -1.22
SYNE1-232ENST00000535081 B2RBV5 119 aa7.39□□□□□ -1.23
SYNE1-232ENST00000535081 KRIT1O00522 736 aa7.39□□□□□ -1.23
SYNE1-232ENST00000535081 SUSD5O60279 629 aa7.39□□□□□ -1.23
SYNE1-232ENST00000535081 PHF19Q5T6S3 580 aa7.39□□□□□ -1.23
SYNE1-232ENST00000535081 TRIM48Q8IWZ4 208 aa7.39□□□□□ -1.23
SYNE1-232ENST00000535081 FAM178BQ8IXR5 827 aa7.39□□□□□ -1.23
SYNE1-232ENST00000535081 C1orf159Q96HA4 380 aa7.39□□□□□ -1.23
SYNE1-232ENST00000535081 SMAD2Q15796 467 aaKnown RBP7.38□□□□□ -1.23
SYNE1-232ENST00000535081 HS1BP3Q53T59 392 aa7.38□□□□□ -1.23
SYNE1-232ENST00000535081 Q6ZUG5 572 aa7.38□□□□□ -1.23
SYNE1-232ENST00000535081 GNRHR2Q96P88 292 aa7.38□□□□□ -1.23
SYNE1-232ENST00000535081 ZNF341Q9BYN7 854 aa7.38□□□□□ -1.23
SYNE1-232ENST00000535081 CDIP1Q9H305 208 aa7.38□□□□□ -1.23
SYNE1-232ENST00000535081 ACTR10Q9NZ32 417 aa7.38□□□□□ -1.23
SYNE1-232ENST00000535081 NPFFR2Q9Y5X5 522 aa7.38□□□□□ -1.23
SYNE1-232ENST00000535081 SLC4A7Q9Y6M7 1214 aa7.38□□□□□ -1.23
SYNE1-232ENST00000535081 CHGBP05060 677 aa7.37□□□□□ -1.23
SYNE1-232ENST00000535081 SLC35F1Q5T1Q4 408 aa7.37□□□□□ -1.23
SYNE1-232ENST00000535081 LARP1BQ659C4 914 aaKnown RBP7.37□□□□□ -1.23
SYNE1-232ENST00000535081 LMF1Q96S06 567 aa7.37□□□□□ -1.23
SYNE1-232ENST00000535081 SLC6A20Q9NP91 592 aa7.37□□□□□ -1.23
SYNE1-232ENST00000535081 SMAD7O15105 426 aaKnown RBP7.36□□□□□ -1.23
SYNE1-232ENST00000535081 FOXS1O43638 330 aa7.36□□□□□ -1.23
SYNE1-232ENST00000535081 FBXO21O94952 628 aa7.36□□□□□ -1.23
SYNE1-232ENST00000535081 KNG1P01042 644 aa7.36□□□□□ -1.23
SYNE1-232ENST00000535081 GRIN1Q05586 938 aa7.36□□□□□ -1.23
SYNE1-232ENST00000535081 PRKD1Q15139 912 aaPredicted RBP7.36□□□□□ -1.23
SYNE1-232ENST00000535081 TCTN3Q6NUS6 607 aa7.36□□□□□ -1.23
SYNE1-232ENST00000535081 GPR155Q7Z3F1 870 aa7.36□□□□□ -1.23
SYNE1-232ENST00000535081 IFNL2Q8IZJ0 200 aa7.36□□□□□ -1.23
SYNE1-232ENST00000535081 PIP4K2CQ8TBX8 421 aa7.36□□□□□ -1.23
SYNE1-232ENST00000535081 AJUBAQ96IF1 538 aa7.36□□□□□ -1.23
SYNE1-232ENST00000535081 INPP5FQ9Y2H2 1132 aa7.36□□□□□ -1.23
SYNE1-232ENST00000535081 SLC27A2O14975 620 aa7.35□□□□□ -1.23
SYNE1-232ENST00000535081 CSF2RBP32927 897 aa7.35□□□□□ -1.23
SYNE1-232ENST00000535081 LRRC37BQ96QE4 947 aa7.35□□□□□ -1.23
SYNE1-232ENST00000535081 TGIF2Q9GZN2 237 aa7.35□□□□□ -1.23
SYNE1-232ENST00000535081 ACBD3Q9H3P7 528 aa7.35□□□□□ -1.23
SYNE1-232ENST00000535081 ZFP69BQ9UJL9 534 aa7.35□□□□□ -1.23
SYNE1-232ENST00000535081 NPIPB8E9PQR5 432 aa7.34□□□□□ -1.23
SYNE1-232ENST00000535081 FHL2Q14192 279 aa7.34□□□□□ -1.23
SYNE1-232ENST00000535081 SKIDA1Q1XH10 827 aa7.34□□□□□ -1.23
SYNE1-232ENST00000535081 TNNI3KQ59H18 835 aa7.34□□□□□ -1.23
SYNE1-232ENST00000535081 MRM1Q6IN84 353 aaKnown RBP7.34□□□□□ -1.23
SYNE1-232ENST00000535081 RNF207Q6ZRF8 634 aa7.34□□□□□ -1.23
SYNE1-232ENST00000535081 CLEC4DQ8WXI8 215 aa7.34□□□□□ -1.23
SYNE1-232ENST00000535081 ADOQ96SZ5 270 aa7.34□□□□□ -1.23
SYNE1-232ENST00000535081 JAM3Q9BX67 310 aa7.34□□□□□ -1.23
SYNE1-232ENST00000535081 KCND1Q9NSA2 647 aa7.34□□□□□ -1.23
SYNE1-232ENST00000535081 ZFR2Q9UPR6 939 aaKnown RBP7.34□□□□□ -1.23
SYNE1-232ENST00000535081 KRTAP1-1Q07627 177 aa7.33□□□□□ -1.24
SYNE1-232ENST00000535081 FOXE3Q13461 319 aa7.33□□□□□ -1.24
SYNE1-232ENST00000535081 MIIPQ5JXC2 388 aa7.33□□□□□ -1.24
SYNE1-232ENST00000535081 REXO1L1PQ8IX06 675 aa7.33□□□□□ -1.24
SYNE1-232ENST00000535081 GIMAP8Q8ND71 665 aaPredicted RBP7.33□□□□□ -1.24
SYNE1-232ENST00000535081 GPR27Q9NS67 375 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms