RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 NFRKBQ6P4R8 1299 aa17.14■□□□□ 0.33
CPSF1-208ENST00000532560 BLIDQ8IZY5 108 aa17.14■□□□□ 0.33
CPSF1-208ENST00000532560 CYP2W1Q8TAV3 490 aa17.14■□□□□ 0.33
CPSF1-208ENST00000532560 KAT2BQ92831 832 aa17.14■□□□□ 0.33
CPSF1-208ENST00000532560 LLPHQ9BRT6 129 aaKnown RBP17.14■□□□□ 0.33
CPSF1-208ENST00000532560 ALG1Q9BT22 464 aa17.14■□□□□ 0.33
CPSF1-208ENST00000532560 KATNAL1Q9BW62 490 aa17.14■□□□□ 0.33
CPSF1-208ENST00000532560 PRO3102Q9H379 93 aa17.14■□□□□ 0.33
CPSF1-208ENST00000532560 KCNH7Q9NS40 1196 aa17.14■□□□□ 0.33
CPSF1-208ENST00000532560 TBX21Q9UL17 535 aa17.14■□□□□ 0.33
CPSF1-208ENST00000532560 TRIM43BA6NCK2 446 aa17.13■□□□□ 0.33
CPSF1-208ENST00000532560 FAM86B1E9PN63 330 aa17.13■□□□□ 0.33
CPSF1-208ENST00000532560 NOP56O00567 594 aaKnown RBP17.13■□□□□ 0.33
CPSF1-208ENST00000532560 JAK2O60674 1132 aa17.13■□□□□ 0.33
CPSF1-208ENST00000532560 ATP9AO75110 1047 aa17.13■□□□□ 0.33
CPSF1-208ENST00000532560 FAM86B2P0C5J1 330 aa17.13■□□□□ 0.33
CPSF1-208ENST00000532560 ZNF286BP0CG31 522 aa17.13■□□□□ 0.33
CPSF1-208ENST00000532560 CIITAP33076 1130 aa17.13■□□□□ 0.33
CPSF1-208ENST00000532560 ZNF76P36508 570 aa17.13■□□□□ 0.33
CPSF1-208ENST00000532560 MAGEA10P43363 369 aaPredicted RBP17.13■□□□□ 0.33
CPSF1-208ENST00000532560 SETQ01105 290 aaPredicted RBP17.13■□□□□ 0.33
CPSF1-208ENST00000532560 PTPN11Q06124 597 aaPredicted RBP17.13■□□□□ 0.33
CPSF1-208ENST00000532560 NBPF20Q3BBV1 942 aa17.13■□□□□ 0.33
CPSF1-208ENST00000532560 CHRDL2Q6WN34 429 aa17.13■□□□□ 0.33
CPSF1-208ENST00000532560 SH3RF1Q7Z6J0 888 aa17.13■□□□□ 0.33
CPSF1-208ENST00000532560 TRIM43Q96BQ3 446 aaPredicted RBP17.13■□□□□ 0.33
CPSF1-208ENST00000532560 GPR20Q99678 358 aa17.13■□□□□ 0.33
CPSF1-208ENST00000532560 GDF15Q99988 308 aa17.13■□□□□ 0.33
CPSF1-208ENST00000532560 BCAS3Q9H6U6 928 aa17.13■□□□□ 0.33
CPSF1-208ENST00000532560 KCNJ14Q9UNX9 436 aa17.13■□□□□ 0.33
CPSF1-208ENST00000532560 IGLV3-22A0A075B6J6 115 aa17.12■□□□□ 0.33
CPSF1-208ENST00000532560 HAS3O00219 553 aa17.12■□□□□ 0.33
CPSF1-208ENST00000532560 B4GALT4O60513 344 aa17.12■□□□□ 0.33
CPSF1-208ENST00000532560 DTNBO60941 627 aa17.12■□□□□ 0.33
CPSF1-208ENST00000532560 KRT25Q7Z3Z0 450 aa17.12■□□□□ 0.33
CPSF1-208ENST00000532560 SESTD1Q86VW0 696 aa17.12■□□□□ 0.33
CPSF1-208ENST00000532560 CCDC83Q8IWF9 413 aa17.12■□□□□ 0.33
CPSF1-208ENST00000532560 C16orf70Q9BSU1 422 aa17.12■□□□□ 0.33
CPSF1-208ENST00000532560 AGO4Q9HCK5 861 aaKnown RBP17.12■□□□□ 0.33
CPSF1-208ENST00000532560 TMEM39AQ9NV64 488 aa17.12■□□□□ 0.33
CPSF1-208ENST00000532560 NFASCO94856 1347 aa17.12■□□□□ 0.33
CPSF1-208ENST00000532560 LGALS2P05162 132 aa17.11■□□□□ 0.33
CPSF1-208ENST00000532560 ARP10275 920 aa17.11■□□□□ 0.33
CPSF1-208ENST00000532560 BMP8BP34820 402 aa17.11■□□□□ 0.33
CPSF1-208ENST00000532560 ANP32AP39687 249 aaKnown RBP17.11■□□□□ 0.33
CPSF1-208ENST00000532560 PSEN2P49810 448 aa17.11■□□□□ 0.33
CPSF1-208ENST00000532560 USP11P51784 963 aa17.11■□□□□ 0.33
CPSF1-208ENST00000532560 MFSD10Q14728 455 aa17.11■□□□□ 0.33
CPSF1-208ENST00000532560 PLA2G4DQ86XP0 818 aa17.11■□□□□ 0.33
CPSF1-208ENST00000532560 TBCKQ8TEA7 893 aa17.11■□□□□ 0.33
CPSF1-208ENST00000532560 LBHD1Q9BQE6 289 aaPredicted RBP17.11■□□□□ 0.33
CPSF1-208ENST00000532560 JPH1Q9HDC5 661 aaPredicted RBP17.11■□□□□ 0.33
CPSF1-208ENST00000532560 GJB4Q9NTQ9 266 aa17.11■□□□□ 0.33
CPSF1-208ENST00000532560 PKD2L1Q9P0L9 805 aa17.11■□□□□ 0.33
CPSF1-208ENST00000532560 COLQQ9Y215 455 aaPredicted RBP17.11■□□□□ 0.33
CPSF1-208ENST00000532560 SUPT20HL2P0C7V6 817 aa17.1■□□□□ 0.33
CPSF1-208ENST00000532560 HMGN5P82970 282 aaKnown RBP17.1■□□□□ 0.33
CPSF1-208ENST00000532560 SP4Q02446 784 aa17.1■□□□□ 0.33
CPSF1-208ENST00000532560 ITGB3BPQ13352 177 aaPredicted RBP17.1■□□□□ 0.33
CPSF1-208ENST00000532560 NONOQ15233 471 aaKnown RBP eCLIP17.1■□□□□ 0.33
CPSF1-208ENST00000532560 KIAA0753Q2KHM9 967 aa17.1■□□□□ 0.33
CPSF1-208ENST00000532560 FAM47CQ5HY64 1035 aa17.1■□□□□ 0.33
CPSF1-208ENST00000532560 LENG9Q96B70 501 aa17.1■□□□□ 0.33
CPSF1-208ENST00000532560 SDF4Q9BRK5 362 aa17.1■□□□□ 0.33
CPSF1-208ENST00000532560 TRPV6Q9H1D0 765 aa17.1■□□□□ 0.33
CPSF1-208ENST00000532560 SLC9A2Q9UBY0 812 aa17.1■□□□□ 0.33
CPSF1-208ENST00000532560 A0A1W2PPC1 479 aa17.09■□□□□ 0.33
CPSF1-208ENST00000532560 EDIL3O43854 480 aa17.09■□□□□ 0.33
CPSF1-208ENST00000532560 CD2BP2O95400 341 aaKnown RBP17.09■□□□□ 0.33
CPSF1-208ENST00000532560 RAG1P15918 1043 aa17.09■□□□□ 0.33
CPSF1-208ENST00000532560 ITGB8P26012 769 aa17.09■□□□□ 0.33
CPSF1-208ENST00000532560 MCM2P49736 904 aa17.09■□□□□ 0.33
CPSF1-208ENST00000532560 MDM2Q00987 491 aaPredicted RBP17.09■□□□□ 0.33
CPSF1-208ENST00000532560 SEPT1Q8WYJ6 367 aa17.09■□□□□ 0.33
CPSF1-208ENST00000532560 BRMS1Q9HCU9 246 aa17.09■□□□□ 0.33
CPSF1-208ENST00000532560 TRMT13Q9NUP7 481 aaKnown RBP17.09■□□□□ 0.33
CPSF1-208ENST00000532560 ZNF215Q9UL58 517 aaPredicted RBP17.09■□□□□ 0.33
CPSF1-208ENST00000532560 TELO2Q9Y4R8 837 aa17.09■□□□□ 0.33
CPSF1-208ENST00000532560 CCDC194A0A1B0GVG4 234 aa17.08■□□□□ 0.32
CPSF1-208ENST00000532560 H3BRB1 525 aa17.08■□□□□ 0.32
CPSF1-208ENST00000532560 IPO5O00410 1097 aaKnown RBP17.08■□□□□ 0.32
CPSF1-208ENST00000532560 TIMP1P01033 207 aa17.08■□□□□ 0.32
CPSF1-208ENST00000532560 MMP1P03956 469 aa17.08■□□□□ 0.32
CPSF1-208ENST00000532560 KRT2P35908 639 aa17.08■□□□□ 0.32
CPSF1-208ENST00000532560 TCF7P36402 384 aaPredicted RBP17.08■□□□□ 0.32
CPSF1-208ENST00000532560 TRIM29Q14134 588 aa17.08■□□□□ 0.32
CPSF1-208ENST00000532560 PRR16Q569H4 304 aa17.08■□□□□ 0.32
CPSF1-208ENST00000532560 MOXD1Q6UVY6 613 aa17.08■□□□□ 0.32
CPSF1-208ENST00000532560 TRIM50Q86XT4 487 aa17.08■□□□□ 0.32
CPSF1-208ENST00000532560 C7orf31Q8N865 590 aa17.08■□□□□ 0.32
CPSF1-208ENST00000532560 OXER1Q8TDS5 423 aa17.08■□□□□ 0.32
CPSF1-208ENST00000532560 BADQ92934 168 aa17.08■□□□□ 0.32
CPSF1-208ENST00000532560 NOC4LQ9BVI4 516 aaKnown RBP17.08■□□□□ 0.32
CPSF1-208ENST00000532560 TUT1Q9H6E5 874 aaKnown RBP17.08■□□□□ 0.32
CPSF1-208ENST00000532560 GTF2IRD1Q9UHL9 959 aa17.08■□□□□ 0.32
CPSF1-208ENST00000532560 EMSYQ7Z589 1322 aa17.07■□□□□ 0.32
CPSF1-208ENST00000532560 CYP3A7-CYP3A51PA0A087WV96 503 aa17.07■□□□□ 0.32
CPSF1-208ENST00000532560 GSTTP1A0A1W2PQM5 241 aa17.07■□□□□ 0.32
CPSF1-208ENST00000532560 CYP3A7P24462 503 aa17.07■□□□□ 0.32
CPSF1-208ENST00000532560 CHMP4BP1P59074 171 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms