RNA–Protein interactions for RNA: ENST00000527046.5

NEDD8-205, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 847 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-205ENST00000527046 CYFIP1Q7L576 1253 aa12.23□□□□□ -0.45
NEDD8-205ENST00000527046 POTEDQ86YR6 584 aa12.23□□□□□ -0.45
NEDD8-205ENST00000527046 TNS4Q8IZW8 715 aa12.23□□□□□ -0.45
NEDD8-205ENST00000527046 AFG1LQ8WV93 481 aa12.23□□□□□ -0.45
NEDD8-205ENST00000527046 PCYT2Q99447 389 aa12.23□□□□□ -0.45
NEDD8-205ENST00000527046 FTOQ9C0B1 505 aaKnown RBP eCLIP12.23□□□□□ -0.455e-15■■□□□ 13.3
NEDD8-205ENST00000527046 PKD2L1Q9P0L9 805 aa12.23□□□□□ -0.45
NEDD8-205ENST00000527046 WDR81Q562E7 1941 aa12.22□□□□□ -0.45
NEDD8-205ENST00000527046 IPO5O00410 1097 aaKnown RBP12.22□□□□□ -0.45
NEDD8-205ENST00000527046 MSCO60682 206 aa12.22□□□□□ -0.45
NEDD8-205ENST00000527046 GH1P01241 217 aa12.22□□□□□ -0.45
NEDD8-205ENST00000527046 RARBP10826 455 aa12.22□□□□□ -0.45
NEDD8-205ENST00000527046 COL6A1P12109 1028 aa12.22□□□□□ -0.45
NEDD8-205ENST00000527046 GCFC2P16383 781 aaKnown RBP12.22□□□□□ -0.45
NEDD8-205ENST00000527046 ATP2B1P20020 1258 aa12.22□□□□□ -0.45
NEDD8-205ENST00000527046 CST5P28325 142 aaPredicted RBP12.22□□□□□ -0.45
NEDD8-205ENST00000527046 ZNF76P36508 570 aa12.22□□□□□ -0.45
NEDD8-205ENST00000527046 TRAPPC10P48553 1259 aa12.22□□□□□ -0.45
NEDD8-205ENST00000527046 PTPAQ15257 358 aa12.22□□□□□ -0.45
NEDD8-205ENST00000527046 GNPTABQ3T906 1256 aa12.22□□□□□ -0.45
NEDD8-205ENST00000527046 TTC38Q5R3I4 469 aa12.22□□□□□ -0.45
NEDD8-205ENST00000527046 METTL7BQ6UX53 244 aa12.22□□□□□ -0.45
NEDD8-205ENST00000527046 TLK2Q86UE8 772 aa12.22□□□□□ -0.45
NEDD8-205ENST00000527046 KAT2BQ92831 832 aa12.22□□□□□ -0.45
NEDD8-205ENST00000527046 GPR20Q99678 358 aa12.22□□□□□ -0.45
NEDD8-205ENST00000527046 XPNPEP3Q9NQH7 507 aa12.22□□□□□ -0.45
NEDD8-205ENST00000527046 DDX25Q9UHL0 483 aaKnown RBP12.22□□□□□ -0.45
NEDD8-205ENST00000527046 VAV3Q9UKW4 847 aa12.22□□□□□ -0.45
NEDD8-205ENST00000527046 GRIN2DO15399 1336 aa12.21□□□□□ -0.45
NEDD8-205ENST00000527046 IGKV6D-21A0A0A0MT36 114 aa12.21□□□□□ -0.45
NEDD8-205ENST00000527046 EML1O00423 815 aa12.21□□□□□ -0.45
NEDD8-205ENST00000527046 TBX3O15119 743 aa12.21□□□□□ -0.45
NEDD8-205ENST00000527046 F13A1P00488 732 aa12.21□□□□□ -0.45
NEDD8-205ENST00000527046 HSP90AA1P07900 732 aaKnown RBP12.21□□□□□ -0.45
NEDD8-205ENST00000527046 MCM7P33993 719 aa12.21□□□□□ -0.45
NEDD8-205ENST00000527046 LAMC2Q13753 1193 aa12.21□□□□□ -0.45
NEDD8-205ENST00000527046 NEDD9Q14511 834 aa12.21□□□□□ -0.45
NEDD8-205ENST00000527046 KCNA10Q16322 511 aa12.21□□□□□ -0.45
NEDD8-205ENST00000527046 RILPL1Q5EBL4 403 aa12.21□□□□□ -0.45
NEDD8-205ENST00000527046 FOXD4L5Q5VV16 416 aaPredicted RBP12.21□□□□□ -0.45
NEDD8-205ENST00000527046 BRAPQ7Z569 592 aa12.21□□□□□ -0.45
NEDD8-205ENST00000527046 DHX37Q8IY37 1157 aaKnown RBP12.21□□□□□ -0.45
NEDD8-205ENST00000527046 DIS3LQ8TF46 1054 aaKnown RBP12.21□□□□□ -0.45
NEDD8-205ENST00000527046 FOXD4L4Q8WXT5 416 aaPredicted RBP12.21□□□□□ -0.45
NEDD8-205ENST00000527046 CDHR1Q96JP9 859 aa12.21□□□□□ -0.45
NEDD8-205ENST00000527046 RIT2Q99578 217 aa12.21□□□□□ -0.45
NEDD8-205ENST00000527046 ZNF577Q9BSK1 485 aa12.21□□□□□ -0.45
NEDD8-205ENST00000527046 C16orf70Q9BSU1 422 aa12.21□□□□□ -0.45
NEDD8-205ENST00000527046 CLIC4Q9Y696 253 aa12.21□□□□□ -0.45
NEDD8-205ENST00000527046 MYH15Q9Y2K3 1946 aa12.21□□□□□ -0.46
NEDD8-205ENST00000527046 TFRCP02786 760 aaKnown RBP12.2□□□□□ -0.46
NEDD8-205ENST00000527046 MMP3P08254 477 aa12.2□□□□□ -0.46
NEDD8-205ENST00000527046 C6orf222P0C671 652 aaPredicted RBP12.2□□□□□ -0.46
NEDD8-205ENST00000527046 PDIA4P13667 645 aaKnown RBP12.2□□□□□ -0.46
NEDD8-205ENST00000527046 ATP4AP20648 1035 aa12.2□□□□□ -0.46
NEDD8-205ENST00000527046 SETQ01105 290 aaPredicted RBP12.2□□□□□ -0.46
NEDD8-205ENST00000527046 PTGDRQ13258 359 aa12.2□□□□□ -0.46
NEDD8-205ENST00000527046 FSCN1Q16658 493 aaKnown RBP12.2□□□□□ -0.46
NEDD8-205ENST00000527046 ABHD15Q6UXT9 468 aa12.2□□□□□ -0.46
NEDD8-205ENST00000527046 OR6J1Q8NGC5 347 aa12.2□□□□□ -0.46
NEDD8-205ENST00000527046 PPTC7Q8NI37 304 aa12.2□□□□□ -0.46
NEDD8-205ENST00000527046 USP28Q96RU2 1077 aa12.2□□□□□ -0.46
NEDD8-205ENST00000527046 TMEM106CQ9BVX2 250 aa12.2□□□□□ -0.46
NEDD8-205ENST00000527046 UNC45AQ9H3U1 944 aa12.2□□□□□ -0.46
NEDD8-205ENST00000527046 ZSCAN16Q9H4T2 348 aaPredicted RBP12.2□□□□□ -0.46
NEDD8-205ENST00000527046 PHF24Q9UPV7 400 aa12.2□□□□□ -0.46
NEDD8-205ENST00000527046 BRCA2P51587 3418 aa12.2□□□□□ -0.46
NEDD8-205ENST00000527046 DDX39AO00148 427 aaKnown RBP12.19□□□□□ -0.46
NEDD8-205ENST00000527046 HAS3O00219 553 aa12.19□□□□□ -0.46
NEDD8-205ENST00000527046 PPFIA4O75335 1185 aa12.19□□□□□ -0.46
NEDD8-205ENST00000527046 LGR5O75473 907 aa12.19□□□□□ -0.46
NEDD8-205ENST00000527046 STBD1O95210 358 aa12.19□□□□□ -0.46
NEDD8-205ENST00000527046 ASGR1P07306 291 aa12.19□□□□□ -0.46
NEDD8-205ENST00000527046 ANP32AP39687 249 aaKnown RBP12.19□□□□□ -0.46
NEDD8-205ENST00000527046 ACLYP53396 1101 aa12.19□□□□□ -0.46
NEDD8-205ENST00000527046 ACTR2P61160 394 aa12.19□□□□□ -0.46
NEDD8-205ENST00000527046 PURAQ00577 322 aaKnown RBP12.19□□□□□ -0.46
NEDD8-205ENST00000527046 GRIN1Q05586 938 aa12.19□□□□□ -0.46
NEDD8-205ENST00000527046 ORC2Q13416 577 aaPredicted RBP12.19□□□□□ -0.46
NEDD8-205ENST00000527046 HIC1Q14526 733 aa12.19□□□□□ -0.46
NEDD8-205ENST00000527046 GNASQ5JWF2 1037 aa12.19□□□□□ -0.46
NEDD8-205ENST00000527046 FAM20AQ96MK3 541 aa12.19□□□□□ -0.46
NEDD8-205ENST00000527046 SPATA33Q96N06 139 aa12.19□□□□□ -0.46
NEDD8-205ENST00000527046 IPO9Q96P70 1041 aaKnown RBP12.19□□□□□ -0.46
NEDD8-205ENST00000527046 NAP1L4Q99733 375 aaKnown RBP12.19□□□□□ -0.46
NEDD8-205ENST00000527046 TSEN34Q9BSV6 310 aaKnown RBP12.19□□□□□ -0.46
NEDD8-205ENST00000527046 MLXIPQ9HAP2 919 aa12.19□□□□□ -0.46
NEDD8-205ENST00000527046 TBC1D22BQ9NU19 505 aa12.19□□□□□ -0.46
NEDD8-205ENST00000527046 TFIP11Q9UBB9 837 aaKnown RBP12.19□□□□□ -0.46
NEDD8-205ENST00000527046 SLC9A2Q9UBY0 812 aa12.19□□□□□ -0.46
NEDD8-205ENST00000527046 SCN10AQ9Y5Y9 1956 aa12.18□□□□□ -0.46
NEDD8-205ENST00000527046 TCHHQ07283 1943 aa12.18□□□□□ -0.46
NEDD8-205ENST00000527046 CCDC85CA6NKD9 419 aa12.18□□□□□ -0.46
NEDD8-205ENST00000527046 DNM1LO00429 736 aa12.18□□□□□ -0.46
NEDD8-205ENST00000527046 NEMFO60524 1076 aa12.18□□□□□ -0.46
NEDD8-205ENST00000527046 NASPP49321 788 aaPredicted RBP12.18□□□□□ -0.46
NEDD8-205ENST00000527046 SOX10P56693 466 aa12.18□□□□□ -0.46
NEDD8-205ENST00000527046 ATP2C1P98194 919 aaPredicted RBP12.18□□□□□ -0.46
NEDD8-205ENST00000527046 PPP2R5CQ13362 524 aa12.18□□□□□ -0.46
NEDD8-205ENST00000527046 MAPK8IP2Q13387 824 aaPredicted RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms