RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 RNPC3Q96LT9 517 aaKnown RBP5.59□□□□□ -1.51
CD44-219ENST00000525685 FANCLQ9NW38 375 aa5.59□□□□□ -1.51
CD44-219ENST00000525685 NTMQ9P121 344 aa5.59□□□□□ -1.51
CD44-219ENST00000525685 ZNF652Q9Y2D9 606 aa5.59□□□□□ -1.51
CD44-219ENST00000525685 COA3Q9Y2R0 106 aaPredicted RBP5.59□□□□□ -1.51
CD44-219ENST00000525685 RSF1Q96T23 1441 aaPredicted RBP5.58□□□□□ -1.52
CD44-219ENST00000525685 CCDC163A0A0D9SF12 145 aa5.58□□□□□ -1.52
CD44-219ENST00000525685 BLACEA4D250 179 aa5.58□□□□□ -1.52
CD44-219ENST00000525685 PRICKLE3O43900 615 aaPredicted RBP5.58□□□□□ -1.52
CD44-219ENST00000525685 NOBOXO60393 691 aa5.58□□□□□ -1.52
CD44-219ENST00000525685 DLX3O60479 287 aa5.58□□□□□ -1.52
CD44-219ENST00000525685 CDC45O75419 566 aa5.58□□□□□ -1.52
CD44-219ENST00000525685 SARSP49591 514 aaKnown RBP5.58□□□□□ -1.52
CD44-219ENST00000525685 SKOR2Q2VWA4 1001 aaPredicted RBP5.58□□□□□ -1.52
CD44-219ENST00000525685 TAF7LQ5H9L4 462 aa5.58□□□□□ -1.52
CD44-219ENST00000525685 EMC4Q5J8M3 183 aa5.58□□□□□ -1.52
CD44-219ENST00000525685 ZFYVE27Q5T4F4 411 aa5.58□□□□□ -1.52
CD44-219ENST00000525685 ZC3H18Q86VM9 953 aaKnown RBP5.58□□□□□ -1.52
CD44-219ENST00000525685 JAZF1Q86VZ6 243 aa5.58□□□□□ -1.52
CD44-219ENST00000525685 KYQ8NBH2 561 aa5.58□□□□□ -1.52
CD44-219ENST00000525685 OSBP2Q969R2 916 aa5.58□□□□□ -1.52
CD44-219ENST00000525685 SLKQ9H2G2 1235 aaPredicted RBP5.58□□□□□ -1.52
CD44-219ENST00000525685 CDIP1Q9H305 208 aa5.58□□□□□ -1.52
CD44-219ENST00000525685 CLDND1Q9NY35 253 aa5.58□□□□□ -1.52
CD44-219ENST00000525685 MRPS23Q9Y3D9 190 aaKnown RBP5.58□□□□□ -1.52
CD44-219ENST00000525685 HGSO14964 777 aaPredicted RBP5.57□□□□□ -1.52
CD44-219ENST00000525685 TADA3O75528 432 aa5.57□□□□□ -1.52
CD44-219ENST00000525685 ASMTLO95671 621 aa5.57□□□□□ -1.52
CD44-219ENST00000525685 THBS2P35442 1172 aa5.57□□□□□ -1.52
CD44-219ENST00000525685 STAT5AP42229 794 aa5.57□□□□□ -1.52
CD44-219ENST00000525685 ITGA1P56199 1179 aa5.57□□□□□ -1.52
CD44-219ENST00000525685 CHRNA2Q15822 529 aa5.57□□□□□ -1.52
CD44-219ENST00000525685 CR1LQ2VPA4 569 aa5.57□□□□□ -1.52
CD44-219ENST00000525685 FOXB2Q5VYV0 432 aa5.57□□□□□ -1.52
CD44-219ENST00000525685 STEAP3Q658P3 488 aa5.57□□□□□ -1.52
CD44-219ENST00000525685 SDE2Q6IQ49 451 aa5.57□□□□□ -1.52
CD44-219ENST00000525685 TTLL7Q6ZT98 887 aa5.57□□□□□ -1.52
CD44-219ENST00000525685 ZNF761Q86XN6 746 aaPredicted RBP5.57□□□□□ -1.52
CD44-219ENST00000525685 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.57□□□□□ -1.52
CD44-219ENST00000525685 DCAF4Q8WV16 495 aa5.57□□□□□ -1.52
CD44-219ENST00000525685 KRTAP9-3Q9BYQ3 159 aa5.57□□□□□ -1.52
CD44-219ENST00000525685 KANSL2Q9H9L4 492 aa5.57□□□□□ -1.52
CD44-219ENST00000525685 GPR27Q9NS67 375 aa5.57□□□□□ -1.52
CD44-219ENST00000525685 NDOR1Q9UHB4 597 aa5.57□□□□□ -1.52
CD44-219ENST00000525685 TCRBV5S2A0A599 114 aa5.56□□□□□ -1.52
CD44-219ENST00000525685 MSCO60682 206 aa5.56□□□□□ -1.52
CD44-219ENST00000525685 CELA3BP08861 270 aa5.56□□□□□ -1.52
CD44-219ENST00000525685 RPL13P26373 211 aaKnown RBP5.56□□□□□ -1.52
CD44-219ENST00000525685 RTP5Q14D33 572 aa5.56□□□□□ -1.52
CD44-219ENST00000525685 TCEA2Q15560 299 aa5.56□□□□□ -1.52
CD44-219ENST00000525685 STK32CQ86UX6 486 aa5.56□□□□□ -1.52
CD44-219ENST00000525685 ARRDC4Q8NCT1 418 aa5.56□□□□□ -1.52
CD44-219ENST00000525685 EXOC2Q96KP1 924 aa5.56□□□□□ -1.52
CD44-219ENST00000525685 PHF20Q9BVI0 1012 aa5.56□□□□□ -1.52
CD44-219ENST00000525685 EPB41L1Q9H4G0 881 aa5.56□□□□□ -1.52
CD44-219ENST00000525685 NGRNQ9NPE2 291 aaKnown RBP5.56□□□□□ -1.52
CD44-219ENST00000525685 USP40Q9NVE5 1235 aa5.56□□□□□ -1.52
CD44-219ENST00000525685 PCDHB4Q9Y5E5 795 aa5.56□□□□□ -1.52
CD44-219ENST00000525685 TOP2AP11388 1531 aaKnown RBP5.55□□□□□ -1.52
CD44-219ENST00000525685 DGKIO75912 1065 aa5.55□□□□□ -1.52
CD44-219ENST00000525685 GJA9P57773 515 aa5.55□□□□□ -1.52
CD44-219ENST00000525685 GABREP78334 506 aa5.55□□□□□ -1.52
CD44-219ENST00000525685 NKX3-2P78367 333 aa5.55□□□□□ -1.52
CD44-219ENST00000525685 SQSTM1Q13501 440 aa5.55□□□□□ -1.52
CD44-219ENST00000525685 PRR31Q5SQ13 230 aa5.55□□□□□ -1.52
CD44-219ENST00000525685 LCE5AQ5TCM9 118 aa5.55□□□□□ -1.52
CD44-219ENST00000525685 ERICH6BQ5W0A0 696 aa5.55□□□□□ -1.52
CD44-219ENST00000525685 RSPO2Q6UXX9 243 aaPredicted RBP5.55□□□□□ -1.52
CD44-219ENST00000525685 C16orf86Q6ZW13 317 aa5.55□□□□□ -1.52
CD44-219ENST00000525685 MTDHQ86UE4 582 aaKnown RBP5.55□□□□□ -1.52
CD44-219ENST00000525685 TTLL6Q8N841 843 aa5.55□□□□□ -1.52
CD44-219ENST00000525685 ADAMTS17Q8TE56 1095 aa5.55□□□□□ -1.52
CD44-219ENST00000525685 PTPRN2Q92932 1015 aa5.55□□□□□ -1.52
CD44-219ENST00000525685 YIPF4Q9BSR8 244 aa5.55□□□□□ -1.52
CD44-219ENST00000525685 ALG1Q9BT22 464 aa5.55□□□□□ -1.52
CD44-219ENST00000525685 DTLQ9NZJ0 730 aa5.55□□□□□ -1.52
CD44-219ENST00000525685 SFMBT1Q9UHJ3 866 aa5.55□□□□□ -1.52
CD44-219ENST00000525685 TBX22Q9Y458 520 aa5.55□□□□□ -1.52
CD44-219ENST00000525685 DUSP10Q9Y6W6 482 aa5.55□□□□□ -1.52
CD44-219ENST00000525685 AQP7O14520 342 aa5.54□□□□□ -1.52
CD44-219ENST00000525685 PPP1R12AO14974 1030 aaPredicted RBP5.54□□□□□ -1.52
CD44-219ENST00000525685 ADAM9Q13443 819 aa5.54□□□□□ -1.52
CD44-219ENST00000525685 NTRK3Q16288 839 aa5.54□□□□□ -1.52
CD44-219ENST00000525685 C21orf62-AS1Q17RA5 79 aa5.54□□□□□ -1.52
CD44-219ENST00000525685 UBXN11Q5T124 520 aa5.54□□□□□ -1.52
CD44-219ENST00000525685 KCNT2Q6UVM3 1135 aa5.54□□□□□ -1.52
CD44-219ENST00000525685 FERMT3Q86UX7 667 aa5.54□□□□□ -1.52
CD44-219ENST00000525685 IFNL3Q8IZI9 196 aa5.54□□□□□ -1.52
CD44-219ENST00000525685 SYNPOQ8N3V7 929 aa5.54□□□□□ -1.52
CD44-219ENST00000525685 JMYQ8N9B5 988 aa5.54□□□□□ -1.52
CD44-219ENST00000525685 TOE1Q96GM8 510 aaKnown RBP5.54□□□□□ -1.52
CD44-219ENST00000525685 MAGEB10Q96LZ2 347 aaPredicted RBP5.54□□□□□ -1.52
CD44-219ENST00000525685 BDH2Q9BUT1 245 aa5.54□□□□□ -1.52
CD44-219ENST00000525685 KRTAP4-2Q9BYR5 136 aa5.54□□□□□ -1.52
CD44-219ENST00000525685 TMEM260Q9NX78 707 aa5.54□□□□□ -1.52
CD44-219ENST00000525685 MYOTQ9UBF9 498 aa5.54□□□□□ -1.52
CD44-219ENST00000525685 PPARGC1AQ9UBK2 798 aaKnown RBP5.54□□□□□ -1.52
CD44-219ENST00000525685 EFCAB14O75071 495 aa5.53□□□□□ -1.52
CD44-219ENST00000525685 RAPGEF3O95398 923 aa5.53□□□□□ -1.52
CD44-219ENST00000525685 LRG1P02750 347 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms