RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 CCDC12Q8WUD4 166 aaPredicted RBP23.91■■□□□ 1.42
VPS28-203ENST00000524521 GPR20Q99678 358 aa23.91■■□□□ 1.42
VPS28-203ENST00000524521 C6orf50Q9HD87 102 aa23.91■■□□□ 1.42
VPS28-203ENST00000524521 JADE2Q9NQC1 790 aa23.91■■□□□ 1.42
VPS28-203ENST00000524521 PKD2L1Q9P0L9 805 aa23.91■■□□□ 1.42
VPS28-203ENST00000524521 GTF2IRD1Q9UHL9 959 aa23.91■■□□□ 1.42
VPS28-203ENST00000524521 H3BRB1 525 aa23.9■■□□□ 1.42
VPS28-203ENST00000524521 CPLX1O14810 134 aa23.9■■□□□ 1.42
VPS28-203ENST00000524521 EIF5BO60841 1220 aaKnown RBP23.9■■□□□ 1.42
VPS28-203ENST00000524521 FGBP02675 491 aa23.9■■□□□ 1.42
VPS28-203ENST00000524521 LGALS2P05162 132 aa23.9■■□□□ 1.42
VPS28-203ENST00000524521 CLK2P49760 499 aaKnown RBP23.9■■□□□ 1.42
VPS28-203ENST00000524521 ANAPC15P60006 121 aa23.9■■□□□ 1.42
VPS28-203ENST00000524521 AP3B2Q13367 1082 aa23.9■■□□□ 1.42
VPS28-203ENST00000524521 PSRC1Q6PGN9 363 aaPredicted RBP23.9■■□□□ 1.42
VPS28-203ENST00000524521 Q7L0L9 218 aa23.9■■□□□ 1.42
VPS28-203ENST00000524521 RPUSD2Q8IZ73 545 aaKnown RBP23.9■■□□□ 1.42
VPS28-203ENST00000524521 DEFB123Q8N688 67 aa23.9■■□□□ 1.42
VPS28-203ENST00000524521 MXRA8Q9BRK3 442 aa23.9■■□□□ 1.42
VPS28-203ENST00000524521 ZMYND12Q9H0C1 365 aa23.9■■□□□ 1.42
VPS28-203ENST00000524521 TUT1Q9H6E5 874 aaKnown RBP23.9■■□□□ 1.42
VPS28-203ENST00000524521 TELO2Q9Y4R8 837 aa23.9■■□□□ 1.42
VPS28-203ENST00000524521 DOCK5Q9H7D0 1870 aa23.9■■□□□ 1.42
VPS28-203ENST00000524521 ESYT2A0FGR8 921 aa23.89■■□□□ 1.41
VPS28-203ENST00000524521 MAFGO15525 162 aa23.89■■□□□ 1.41
VPS28-203ENST00000524521 KCNA2P16389 499 aa23.89■■□□□ 1.41
VPS28-203ENST00000524521 SSRP1Q08945 709 aaKnown RBP23.89■■□□□ 1.41
VPS28-203ENST00000524521 BFSP2Q13515 415 aa23.89■■□□□ 1.41
VPS28-203ENST00000524521 UTP14CQ5TAP6 766 aaKnown RBP23.89■■□□□ 1.41
VPS28-203ENST00000524521 ZNF76P36508 570 aa23.88■■□□□ 1.41
VPS28-203ENST00000524521 TRIM22Q8IYM9 498 aa23.88■■□□□ 1.41
VPS28-203ENST00000524521 CCDC155Q8N6L0 562 aa23.88■■□□□ 1.41
VPS28-203ENST00000524521 CYP2W1Q8TAV3 490 aa23.88■■□□□ 1.41
VPS28-203ENST00000524521 CTAGE1Q96RT6 745 aa23.88■■□□□ 1.41
VPS28-203ENST00000524521 HSFX4A0A1B0GTS1 333 aaPredicted RBP23.87■■□□□ 1.41
VPS28-203ENST00000524521 HSFX3A0A1B0GWH4 333 aaPredicted RBP23.87■■□□□ 1.41
VPS28-203ENST00000524521 PITPNM1O00562 1244 aa23.87■■□□□ 1.41
VPS28-203ENST00000524521 ADAMTS3O15072 1205 aa23.87■■□□□ 1.41
VPS28-203ENST00000524521 SEC24BO95487 1268 aa23.87■■□□□ 1.41
VPS28-203ENST00000524521 GNA11P29992 359 aa23.87■■□□□ 1.41
VPS28-203ENST00000524521 SREBF1P36956 1147 aa23.87■■□□□ 1.41
VPS28-203ENST00000524521 SMAD3P84022 425 aaKnown RBP23.87■■□□□ 1.41
VPS28-203ENST00000524521 ZNF200P98182 395 aaPredicted RBP23.87■■□□□ 1.41
VPS28-203ENST00000524521 CPLX2Q6PUV4 134 aaKnown RBP23.87■■□□□ 1.41
VPS28-203ENST00000524521 DEFB128Q7Z7B8 93 aa23.87■■□□□ 1.41
VPS28-203ENST00000524521 KCNH7Q9NS40 1196 aa23.87■■□□□ 1.41
VPS28-203ENST00000524521 VPS54Q9P1Q0 977 aa23.87■■□□□ 1.41
VPS28-203ENST00000524521 IQCF3P0C7M6 154 aa23.86■■□□□ 1.41
VPS28-203ENST00000524521 ARHGAP4P98171 946 aa23.86■■□□□ 1.41
VPS28-203ENST00000524521 CEP55Q53EZ4 464 aa23.86■■□□□ 1.41
VPS28-203ENST00000524521 MCTP2Q6DN12 878 aa23.86■■□□□ 1.41
VPS28-203ENST00000524521 OTOP2Q7RTS6 562 aa23.86■■□□□ 1.41
VPS28-203ENST00000524521 REXO1Q8N1G1 1221 aaKnown RBP23.86■■□□□ 1.41
VPS28-203ENST00000524521 CCDC148Q8NFR7 591 aa23.86■■□□□ 1.41
VPS28-203ENST00000524521 LAMA3Q16787 3333 aa23.85■■□□□ 1.41
VPS28-203ENST00000524521 ARP10275 920 aa23.85■■□□□ 1.41
VPS28-203ENST00000524521 TCF7P36402 384 aaPredicted RBP23.85■■□□□ 1.41
VPS28-203ENST00000524521 TRIM50Q86XT4 487 aa23.85■■□□□ 1.41
VPS28-203ENST00000524521 CAGE1Q8TC20 777 aa23.85■■□□□ 1.41
VPS28-203ENST00000524521 BICD2Q8TD16 824 aa23.85■■□□□ 1.41
VPS28-203ENST00000524521 SEPT1Q8WYJ6 367 aa23.85■■□□□ 1.41
VPS28-203ENST00000524521 HERVK_113Q902F9 699 aa23.85■■□□□ 1.41
VPS28-203ENST00000524521 DHX38Q92620 1227 aaKnown RBP23.85■■□□□ 1.41
VPS28-203ENST00000524521 MTIF3Q9H2K0 278 aaKnown RBP23.85■■□□□ 1.41
VPS28-203ENST00000524521 ZNF215Q9UL58 517 aaPredicted RBP23.85■■□□□ 1.41
VPS28-203ENST00000524521 C17orf102A2RUQ5 167 aa23.84■■□□□ 1.41
VPS28-203ENST00000524521 SMIM10L2AP0DMW4 78 aa23.84■■□□□ 1.41
VPS28-203ENST00000524521 SMIM10L2BP0DMW5 78 aa23.84■■□□□ 1.41
VPS28-203ENST00000524521 NLRP5P59047 1200 aa23.84■■□□□ 1.41
VPS28-203ENST00000524521 PTK7Q13308 1070 aa23.84■■□□□ 1.41
VPS28-203ENST00000524521 HIC1Q14526 733 aa23.84■■□□□ 1.41
VPS28-203ENST00000524521 RASIP1Q5U651 963 aa23.84■■□□□ 1.41
VPS28-203ENST00000524521 FAM109BQ6ICB4 259 aaPredicted RBP23.84■■□□□ 1.41
VPS28-203ENST00000524521 VWCEQ96DN2 955 aa23.84■■□□□ 1.41
VPS28-203ENST00000524521 SLKQ9H2G2 1235 aaPredicted RBP23.84■■□□□ 1.41
VPS28-203ENST00000524521 SH3GLB2Q9NR46 395 aa23.84■■□□□ 1.41
VPS28-203ENST00000524521 TPCN1Q9ULQ1 816 aa23.84■■□□□ 1.41
VPS28-203ENST00000524521 SZT2Q5T011 3432 aa23.84■■□□□ 1.41
VPS28-203ENST00000524521 TRIP12Q14669 1992 aaPredicted RBP23.83■■□□□ 1.41
VPS28-203ENST00000524521 GSTTP1A0A1W2PQM5 241 aa23.83■■□□□ 1.41
VPS28-203ENST00000524521 MEIS1O00470 390 aa23.83■■□□□ 1.41
VPS28-203ENST00000524521 DEXIO95424 95 aa23.83■■□□□ 1.41
VPS28-203ENST00000524521 RFC2P35250 354 aa23.83■■□□□ 1.41
VPS28-203ENST00000524521 ANKRD1Q15327 319 aa23.83■■□□□ 1.41
VPS28-203ENST00000524521 ZNF697Q5TEC3 545 aa23.83■■□□□ 1.41
VPS28-203ENST00000524521 RASGRP4Q8TDF6 673 aa23.83■■□□□ 1.41
VPS28-203ENST00000524521 AFAP1L1Q8TED9 768 aa23.83■■□□□ 1.41
VPS28-203ENST00000524521 FAM161BQ96MY7 647 aa23.83■■□□□ 1.41
VPS28-203ENST00000524521 FTOQ9C0B1 505 aaKnown RBP eCLIP23.83■■□□□ 1.41
VPS28-203ENST00000524521 RNPEPQ9H4A4 650 aa23.83■■□□□ 1.41
VPS28-203ENST00000524521 MTMR10Q9NXD2 777 aa23.83■■□□□ 1.41
VPS28-203ENST00000524521 CXXC1Q9P0U4 656 aaPredicted RBP23.83■■□□□ 1.41
VPS28-203ENST00000524521 PFKMP08237 780 aa23.82■■□□□ 1.4
VPS28-203ENST00000524521 SELPP16109 830 aa23.82■■□□□ 1.4
VPS28-203ENST00000524521 AK2P54819 239 aa23.82■■□□□ 1.4
VPS28-203ENST00000524521 SCRN1Q12765 414 aa23.82■■□□□ 1.4
VPS28-203ENST00000524521 PLA2G4DQ86XP0 818 aa23.82■■□□□ 1.4
VPS28-203ENST00000524521 ATP6V0A1Q93050 837 aa23.82■■□□□ 1.4
VPS28-203ENST00000524521 SDF4Q9BRK5 362 aa23.82■■□□□ 1.4
VPS28-203ENST00000524521 AGO4Q9HCK5 861 aaKnown RBP23.82■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms