RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 SETD4Q9NVD3 440 aa13.58□□□□□ -0.24
SDCBP-211ENST00000523441 CD207Q9UJ71 328 aa13.58□□□□□ -0.24
SDCBP-211ENST00000523441 USP34Q70CQ2 3546 aa13.58□□□□□ -0.24
SDCBP-211ENST00000523441 TTC41PQ6P2S7 1318 aa13.58□□□□□ -0.24
SDCBP-211ENST00000523441 KAT6AQ92794 2004 aa13.57□□□□□ -0.24
SDCBP-211ENST00000523441 GFRA3O60609 400 aa13.57□□□□□ -0.24
SDCBP-211ENST00000523441 HOXA13P31271 388 aaPredicted RBP13.57□□□□□ -0.24
SDCBP-211ENST00000523441 SMAD4Q13485 552 aaKnown RBP13.57□□□□□ -0.24
SDCBP-211ENST00000523441 CELF3Q5SZQ8 465 aaKnown RBP13.57□□□□□ -0.24
SDCBP-211ENST00000523441 MYSM1Q5VVJ2 828 aa13.57□□□□□ -0.24
SDCBP-211ENST00000523441 MFSD6Q6ZSS7 791 aa13.57□□□□□ -0.24
SDCBP-211ENST00000523441 TRIM67Q6ZTA4 783 aa13.57□□□□□ -0.24
SDCBP-211ENST00000523441 RBM23Q86U06 439 aaKnown RBP13.57□□□□□ -0.24
SDCBP-211ENST00000523441 RGS22Q8NE09 1264 aa13.57□□□□□ -0.24
SDCBP-211ENST00000523441 RNPEPQ9H4A4 650 aa13.57□□□□□ -0.24
SDCBP-211ENST00000523441 BCAS3Q9H6U6 928 aa13.57□□□□□ -0.24
SDCBP-211ENST00000523441 MRPL11Q9Y3B7 192 aaKnown RBP13.57□□□□□ -0.24
SDCBP-211ENST00000523441 A0A0D9SFI3 127 aa13.56□□□□□ -0.24
SDCBP-211ENST00000523441 H3BRB1 525 aa13.56□□□□□ -0.24
SDCBP-211ENST00000523441 ST18O60284 1047 aa13.56□□□□□ -0.24
SDCBP-211ENST00000523441 PPFIA4O75335 1185 aa13.56□□□□□ -0.24
SDCBP-211ENST00000523441 HSPD1P10809 573 aaKnown RBP13.56□□□□□ -0.24
SDCBP-211ENST00000523441 GHRP10912 638 aa13.56□□□□□ -0.24
SDCBP-211ENST00000523441 MX1P20591 662 aa13.56□□□□□ -0.24
SDCBP-211ENST00000523441 UBA1P22314 1058 aaKnown RBP13.56□□□□□ -0.24
SDCBP-211ENST00000523441 BMPR1AP36894 532 aa13.56□□□□□ -0.24
SDCBP-211ENST00000523441 SP2Q02086 613 aa13.56□□□□□ -0.24
SDCBP-211ENST00000523441 TCF15Q12870 199 aa13.56□□□□□ -0.24
SDCBP-211ENST00000523441 BTG3Q14201 252 aaPredicted RBP13.56□□□□□ -0.24
SDCBP-211ENST00000523441 GPATCH4Q5T3I0 446 aaKnown RBP13.56□□□□□ -0.24
SDCBP-211ENST00000523441 UTP14CQ5TAP6 766 aaKnown RBP13.56□□□□□ -0.24
SDCBP-211ENST00000523441 TRIM50Q86XT4 487 aa13.56□□□□□ -0.24
SDCBP-211ENST00000523441 TBC1D10CQ8IV04 446 aa13.56□□□□□ -0.24
SDCBP-211ENST00000523441 IL31RAQ8NI17 732 aa13.56□□□□□ -0.24
SDCBP-211ENST00000523441 ATOH1Q92858 354 aaPredicted RBP13.56□□□□□ -0.24
SDCBP-211ENST00000523441 EMID1Q96A84 441 aaPredicted RBP13.56□□□□□ -0.24
SDCBP-211ENST00000523441 RPGRIP1Q96KN7 1286 aa13.56□□□□□ -0.24
SDCBP-211ENST00000523441 C16orf70Q9BSU1 422 aa13.56□□□□□ -0.24
SDCBP-211ENST00000523441 C11orf84Q9BUA3 381 aaPredicted RBP13.56□□□□□ -0.24
SDCBP-211ENST00000523441 TUT1Q9H6E5 874 aaKnown RBP13.56□□□□□ -0.24
SDCBP-211ENST00000523441 KAT14Q9H8E8 782 aa13.56□□□□□ -0.24
SDCBP-211ENST00000523441 TCP11L1Q9NUJ3 509 aa13.56□□□□□ -0.24
SDCBP-211ENST00000523441 NEDD4P46934 1319 aa13.56□□□□□ -0.24
SDCBP-211ENST00000523441 CCDC171Q6TFL3 1326 aa13.56□□□□□ -0.24
SDCBP-211ENST00000523441 ZFHX2Q9C0A1 2572 aaPredicted RBP13.55□□□□□ -0.24
SDCBP-211ENST00000523441 TRIM6-TRIM34B2RNG4 842 aa13.55□□□□□ -0.24
SDCBP-211ENST00000523441 NOP56O00567 594 aaKnown RBP13.55□□□□□ -0.24
SDCBP-211ENST00000523441 PPFIA3O75145 1194 aa13.55□□□□□ -0.24
SDCBP-211ENST00000523441 LGALS2P05162 132 aa13.55□□□□□ -0.24
SDCBP-211ENST00000523441 FGRP09769 529 aa13.55□□□□□ -0.24
SDCBP-211ENST00000523441 SNHG28P0DPA3 235 aa13.55□□□□□ -0.24
SDCBP-211ENST00000523441 SP100P23497 879 aaPredicted RBP13.55□□□□□ -0.24
SDCBP-211ENST00000523441 VCPP55072 806 aaKnown RBP13.55□□□□□ -0.24
SDCBP-211ENST00000523441 ARHGAP4P98171 946 aa13.55□□□□□ -0.24
SDCBP-211ENST00000523441 CTC1Q2NKJ3 1217 aa13.55□□□□□ -0.24
SDCBP-211ENST00000523441 PAN2Q504Q3 1202 aaKnown RBP13.55□□□□□ -0.24
SDCBP-211ENST00000523441 FCHSD1Q86WN1 690 aa13.55□□□□□ -0.24
SDCBP-211ENST00000523441 PNMA1Q8ND90 353 aa13.55□□□□□ -0.24
SDCBP-211ENST00000523441 PCDHGC5Q9Y5F6 944 aa13.55□□□□□ -0.24
SDCBP-211ENST00000523441 ADGRA3Q8IWK6 1321 aa13.55□□□□□ -0.24
SDCBP-211ENST00000523441 NCK2O43639 380 aa13.54□□□□□ -0.24
SDCBP-211ENST00000523441 RGS20O76081 388 aa13.54□□□□□ -0.24
SDCBP-211ENST00000523441 ZXDAP98168 799 aa13.54□□□□□ -0.24
SDCBP-211ENST00000523441 NMIQ13287 307 aaPredicted RBP13.54□□□□□ -0.24
SDCBP-211ENST00000523441 COL19A1Q14993 1142 aa13.54□□□□□ -0.24
SDCBP-211ENST00000523441 ADGRD2Q7Z7M1 963 aa13.54□□□□□ -0.24
SDCBP-211ENST00000523441 ZNF589Q86UQ0 364 aaPredicted RBP13.54□□□□□ -0.24
SDCBP-211ENST00000523441 TTC14Q96N46 770 aa13.54□□□□□ -0.24
SDCBP-211ENST00000523441 PDCD2LQ9BRP1 358 aa13.54□□□□□ -0.24
SDCBP-211ENST00000523441 JMJD4Q9H9V9 463 aa13.54□□□□□ -0.24
SDCBP-211ENST00000523441 RCAN3Q9UKA8 241 aa13.54□□□□□ -0.24
SDCBP-211ENST00000523441 BARX2Q9UMQ3 279 aaPredicted RBP13.54□□□□□ -0.24
SDCBP-211ENST00000523441 PLXNA4Q9HCM2 1894 aa13.54□□□□□ -0.24
SDCBP-211ENST00000523441 LOXHD1Q8IVV2 1947 aa13.54□□□□□ -0.24
SDCBP-211ENST00000523441 H0Y858 1186 aa13.53□□□□□ -0.24
SDCBP-211ENST00000523441 KDM4AO75164 1064 aa13.53□□□□□ -0.24
SDCBP-211ENST00000523441 PARP1P09874 1014 aaKnown RBP13.53□□□□□ -0.24
SDCBP-211ENST00000523441 NRIP1P48552 1158 aa13.53□□□□□ -0.24
SDCBP-211ENST00000523441 RRP1P56182 461 aaKnown RBP13.53□□□□□ -0.24
SDCBP-211ENST00000523441 ADAM15Q13444 863 aa13.53□□□□□ -0.24
SDCBP-211ENST00000523441 PGM5Q15124 567 aa13.53□□□□□ -0.24
SDCBP-211ENST00000523441 ALX1Q15699 326 aa13.53□□□□□ -0.24
SDCBP-211ENST00000523441 HOMER1Q86YM7 354 aa13.53□□□□□ -0.24
SDCBP-211ENST00000523441 FBXL6Q8N531 539 aa13.53□□□□□ -0.24
SDCBP-211ENST00000523441 ESR2Q92731 530 aa13.53□□□□□ -0.24
SDCBP-211ENST00000523441 APOL5Q9BWW9 433 aa13.53□□□□□ -0.24
SDCBP-211ENST00000523441 LMAN2LQ9H0V9 348 aa13.53□□□□□ -0.24
SDCBP-211ENST00000523441 TLR9Q9NR96 1032 aa13.53□□□□□ -0.24
SDCBP-211ENST00000523441 HELLSQ9NRZ9 838 aa13.53□□□□□ -0.24
SDCBP-211ENST00000523441 RTEL1Q9NZ71 1219 aa13.53□□□□□ -0.24
SDCBP-211ENST00000523441 ZBTB47Q9UFB7 747 aaPredicted RBP13.53□□□□□ -0.24
SDCBP-211ENST00000523441 TELO2Q9Y4R8 837 aa13.53□□□□□ -0.24
SDCBP-211ENST00000523441 CFAP54Q96N23 3096 aa13.53□□□□□ -0.24
SDCBP-211ENST00000523441 RB1P06400 928 aa13.52□□□□□ -0.25
SDCBP-211ENST00000523441 DNAJB1P25685 340 aa13.52□□□□□ -0.25
SDCBP-211ENST00000523441 CCND2P30279 289 aa13.52□□□□□ -0.25
SDCBP-211ENST00000523441 RBM10P98175 930 aaKnown RBP13.52□□□□□ -0.25
SDCBP-211ENST00000523441 MCMDC2Q4G0Z9 681 aa13.52□□□□□ -0.25
SDCBP-211ENST00000523441 RUFY4Q6ZNE9 571 aa13.52□□□□□ -0.25
SDCBP-211ENST00000523441 CYFIP1Q7L576 1253 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms