RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 IKZF1Q13422 519 aa9.74□□□□□ -0.85
LSM1-202ENST00000520286 TERF2Q15554 542 aa9.74□□□□□ -0.85
LSM1-202ENST00000520286 NXNQ6DKJ4 435 aa9.74□□□□□ -0.85
LSM1-202ENST00000520286 TCEAL8Q8IYN2 117 aa9.74□□□□□ -0.85
LSM1-202ENST00000520286 NLGN2Q8NFZ4 835 aa9.74□□□□□ -0.85
LSM1-202ENST00000520286 TTC8Q8TAM2 541 aa9.74□□□□□ -0.85
LSM1-202ENST00000520286 PIP4K2CQ8TBX8 421 aa9.74□□□□□ -0.85
LSM1-202ENST00000520286 USP33Q8TEY7 942 aa9.74□□□□□ -0.85
LSM1-202ENST00000520286 LINC01599Q8WXQ3 324 aa9.74□□□□□ -0.85
LSM1-202ENST00000520286 ELF4Q99607 663 aaPredicted RBP9.74□□□□□ -0.85
LSM1-202ENST00000520286 SLC13A1Q9BZW2 595 aa9.74□□□□□ -0.85
LSM1-202ENST00000520286 PCIF1Q9H4Z3 704 aa9.74□□□□□ -0.85
LSM1-202ENST00000520286 FZD9O00144 591 aa9.73□□□□□ -0.85
LSM1-202ENST00000520286 MAN2B1O00754 1011 aa9.73□□□□□ -0.85
LSM1-202ENST00000520286 DVL2O14641 736 aa9.73□□□□□ -0.85
LSM1-202ENST00000520286 HIP1RO75146 1068 aa9.73□□□□□ -0.85
LSM1-202ENST00000520286 PEX14O75381 377 aa9.73□□□□□ -0.85
LSM1-202ENST00000520286 LSP1P33241 339 aa9.73□□□□□ -0.85
LSM1-202ENST00000520286 KIR2DL1P43626 348 aaPredicted RBP9.73□□□□□ -0.85
LSM1-202ENST00000520286 KIR2DL2P43627 348 aaPredicted RBP9.73□□□□□ -0.85
LSM1-202ENST00000520286 PHC1P78364 1004 aa9.73□□□□□ -0.85
LSM1-202ENST00000520286 DOC2BQ14184 412 aa9.73□□□□□ -0.85
LSM1-202ENST00000520286 MLC1Q15049 377 aa9.73□□□□□ -0.85
LSM1-202ENST00000520286 MROH9Q5TGP6 573 aa9.73□□□□□ -0.85
LSM1-202ENST00000520286 ANGEL2Q5VTE6 544 aaKnown RBP9.73□□□□□ -0.85
LSM1-202ENST00000520286 CCSAPQ6IQ19 270 aaPredicted RBP9.73□□□□□ -0.85
LSM1-202ENST00000520286 FSTL4Q6MZW2 842 aa9.73□□□□□ -0.85
LSM1-202ENST00000520286 SLC51AQ86UW1 340 aa9.73□□□□□ -0.85
LSM1-202ENST00000520286 NOSTRINQ8IVI9 506 aa9.73□□□□□ -0.85
LSM1-202ENST00000520286 LZTR1Q8N653 840 aa9.73□□□□□ -0.85
LSM1-202ENST00000520286 C1orf162Q8NEQ5 155 aaPredicted RBP9.73□□□□□ -0.85
LSM1-202ENST00000520286 SH3RF2Q8TEC5 729 aa9.73□□□□□ -0.85
LSM1-202ENST00000520286 MTA3Q9BTC8 594 aa9.73□□□□□ -0.85
LSM1-202ENST00000520286 CARS2Q9HA77 564 aaKnown RBP9.73□□□□□ -0.85
LSM1-202ENST00000520286 TOMM22Q9NS69 142 aa9.73□□□□□ -0.85
LSM1-202ENST00000520286 EBF1Q9UH73 591 aa9.73□□□□□ -0.85
LSM1-202ENST00000520286 SCDO00767 359 aa9.72□□□□□ -0.85
LSM1-202ENST00000520286 USP2O75604 605 aaPredicted RBP9.72□□□□□ -0.85
LSM1-202ENST00000520286 CT47B1P0C2W7 299 aaPredicted RBP9.72□□□□□ -0.85
LSM1-202ENST00000520286 HOXA10P31260 410 aaPredicted RBP9.72□□□□□ -0.85
LSM1-202ENST00000520286 KIF11P52732 1056 aa9.72□□□□□ -0.85
LSM1-202ENST00000520286 CORO7P57737 925 aa9.72□□□□□ -0.85
LSM1-202ENST00000520286 RTP1P59025 263 aa9.72□□□□□ -0.85
LSM1-202ENST00000520286 SMAD3P84022 425 aaKnown RBP9.72□□□□□ -0.85
LSM1-202ENST00000520286 PCBP2Q15366 365 aaKnown RBP eCLIP9.72□□□□□ -0.85
LSM1-202ENST00000520286 SMAD2Q15796 467 aaKnown RBP9.72□□□□□ -0.85
LSM1-202ENST00000520286 PGM2L1Q6PCE3 622 aa9.72□□□□□ -0.85
LSM1-202ENST00000520286 RASSF3Q86WH2 238 aa9.72□□□□□ -0.85
LSM1-202ENST00000520286 RIOX2Q8IUF8 465 aa9.72□□□□□ -0.85
LSM1-202ENST00000520286 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.72□□□□□ -0.85
LSM1-202ENST00000520286 MISP3Q96FF7 219 aa9.72□□□□□ -0.85
LSM1-202ENST00000520286 FAXDC2Q96IV6 333 aa9.72□□□□□ -0.85
LSM1-202ENST00000520286 SLC6A20Q9NP91 592 aa9.72□□□□□ -0.85
LSM1-202ENST00000520286 DSEQ9UL01 958 aa9.72□□□□□ -0.85
LSM1-202ENST00000520286 SRPK3Q9UPE1 567 aa9.72□□□□□ -0.85
LSM1-202ENST00000520286 ZNF652Q9Y2D9 606 aa9.72□□□□□ -0.85
LSM1-202ENST00000520286 NOC2LQ9Y3T9 749 aaKnown RBP9.72□□□□□ -0.85
LSM1-202ENST00000520286 A0A1W2PQ27 194 aa9.71□□□□□ -0.86
LSM1-202ENST00000520286 A0A1W2PQ64 194 aa9.71□□□□□ -0.86
LSM1-202ENST00000520286 A0A1W2PQC6 194 aa9.71□□□□□ -0.86
LSM1-202ENST00000520286 A0A1W2PQD8 194 aa9.71□□□□□ -0.86
LSM1-202ENST00000520286 GOLGA6CA6NDK9 693 aa9.71□□□□□ -0.86
LSM1-202ENST00000520286 GOLGA6BA6NDN3 693 aa9.71□□□□□ -0.86
LSM1-202ENST00000520286 CAND2O75155 1236 aa9.71□□□□□ -0.86
LSM1-202ENST00000520286 CFBP00751 764 aa9.71□□□□□ -0.86
LSM1-202ENST00000520286 GOLGA6DP0CG33 693 aa9.71□□□□□ -0.86
LSM1-202ENST00000520286 PLA2G4EQ3MJ16 856 aa9.71□□□□□ -0.86
LSM1-202ENST00000520286 FIGNQ5HY92 759 aa9.71□□□□□ -0.86
LSM1-202ENST00000520286 CEP128Q6ZU80 1094 aa9.71□□□□□ -0.86
LSM1-202ENST00000520286 PNMA8AQ86V59 439 aaPredicted RBP9.71□□□□□ -0.86
LSM1-202ENST00000520286 MAGEB6Q8N7X4 407 aa9.71□□□□□ -0.86
LSM1-202ENST00000520286 GOLGA6AQ9NYA3 693 aa9.71□□□□□ -0.86
LSM1-202ENST00000520286 LMCD1Q9NZU5 365 aa9.71□□□□□ -0.86
LSM1-202ENST00000520286 KRIT1O00522 736 aa9.7□□□□□ -0.86
LSM1-202ENST00000520286 PRPF3O43395 683 aaKnown RBP9.7□□□□□ -0.86
LSM1-202ENST00000520286 ITGB2P05107 769 aa9.7□□□□□ -0.86
LSM1-202ENST00000520286 SCAND1P57086 179 aa9.7□□□□□ -0.86
LSM1-202ENST00000520286 RASSF7Q02833 373 aa9.7□□□□□ -0.86
LSM1-202ENST00000520286 HSF5Q4G112 596 aaPredicted RBP9.7□□□□□ -0.86
LSM1-202ENST00000520286 GPR158Q5T848 1215 aa9.7□□□□□ -0.86
LSM1-202ENST00000520286 CPZQ66K79 652 aa9.7□□□□□ -0.86
LSM1-202ENST00000520286 NLGN4XQ8N0W4 816 aa9.7□□□□□ -0.86
LSM1-202ENST00000520286 ZNF610Q8N9Z0 462 aa9.7□□□□□ -0.86
LSM1-202ENST00000520286 UHMK1Q8TAS1 419 aaKnown RBP9.7□□□□□ -0.86
LSM1-202ENST00000520286 ADAMTS10Q9H324 1103 aa9.7□□□□□ -0.86
LSM1-202ENST00000520286 TOPORSQ9NS56 1045 aaPredicted RBP9.7□□□□□ -0.86
LSM1-202ENST00000520286 MKS1Q9NXB0 559 aa9.7□□□□□ -0.86
LSM1-202ENST00000520286 SLAMF8Q9P0V8 285 aa9.7□□□□□ -0.86
LSM1-202ENST00000520286 CLASP2O75122 1294 aaKnown RBP9.69□□□□□ -0.86
LSM1-202ENST00000520286 ZGLP1P0C6A0 271 aa9.69□□□□□ -0.86
LSM1-202ENST00000520286 RBP3P10745 1247 aa9.69□□□□□ -0.86
LSM1-202ENST00000520286 CD96P40200 585 aa9.69□□□□□ -0.86
LSM1-202ENST00000520286 RECQLP46063 649 aaPredicted RBP9.69□□□□□ -0.86
LSM1-202ENST00000520286 BNIP3Q12983 259 aa9.69□□□□□ -0.86
LSM1-202ENST00000520286 MAP9Q49MG5 647 aa9.69□□□□□ -0.86
LSM1-202ENST00000520286 CMIPQ8IY22 773 aa9.69□□□□□ -0.86
LSM1-202ENST00000520286 ASIC4Q96FT7 647 aa9.69□□□□□ -0.86
LSM1-202ENST00000520286 PSMD1Q99460 953 aa9.69□□□□□ -0.86
LSM1-202ENST00000520286 CECR2Q9BXF3 1484 aa9.69□□□□□ -0.86
LSM1-202ENST00000520286 CD244Q9BZW8 370 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms