RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 STAM2O75886 525 aa13.15□□□□□ -0.3
VCAN-212ENST00000515397 LGALS2P05162 132 aa13.15□□□□□ -0.3
VCAN-212ENST00000515397 KCNA2P16389 499 aa13.15□□□□□ -0.3
VCAN-212ENST00000515397 IFNAR1P17181 557 aa13.15□□□□□ -0.3
VCAN-212ENST00000515397 XRRA1Q6P2D8 792 aa13.15□□□□□ -0.3
VCAN-212ENST00000515397 METTL7BQ6UX53 244 aa13.15□□□□□ -0.3
VCAN-212ENST00000515397 DHX38Q92620 1227 aaKnown RBP13.15□□□□□ -0.3
VCAN-212ENST00000515397 WNT8BQ93098 351 aa13.15□□□□□ -0.3
VCAN-212ENST00000515397 AIFM3Q96NN9 605 aa13.15□□□□□ -0.3
VCAN-212ENST00000515397 IL23AQ9NPF7 189 aa13.15□□□□□ -0.3
VCAN-212ENST00000515397 JADE2Q9NQC1 790 aa13.15□□□□□ -0.3
VCAN-212ENST00000515397 CXXC1Q9P0U4 656 aaPredicted RBP13.15□□□□□ -0.3
VCAN-212ENST00000515397 TPCN1Q9ULQ1 816 aa13.15□□□□□ -0.3
VCAN-212ENST00000515397 CPLX1O14810 134 aa13.14□□□□□ -0.31
VCAN-212ENST00000515397 F2P00734 622 aa13.14□□□□□ -0.31
VCAN-212ENST00000515397 FGBP02675 491 aa13.14□□□□□ -0.31
VCAN-212ENST00000515397 HOXD8P13378 290 aaPredicted RBP13.14□□□□□ -0.31
VCAN-212ENST00000515397 ZNF76P36508 570 aa13.14□□□□□ -0.31
VCAN-212ENST00000515397 CLK2P49760 499 aaKnown RBP13.14□□□□□ -0.31
VCAN-212ENST00000515397 SSRP1Q08945 709 aaKnown RBP13.14□□□□□ -0.31
VCAN-212ENST00000515397 MTMR1Q13613 665 aa13.14□□□□□ -0.31
VCAN-212ENST00000515397 PPP1R18Q6NYC8 613 aa13.14□□□□□ -0.31
VCAN-212ENST00000515397 NECAB1Q8N987 351 aa13.14□□□□□ -0.31
VCAN-212ENST00000515397 RETREG2Q8NC44 543 aa13.14□□□□□ -0.31
VCAN-212ENST00000515397 GPRASP2Q96D09 838 aa13.14□□□□□ -0.31
VCAN-212ENST00000515397 ZNF274Q96GC6 653 aaPredicted RBP13.14□□□□□ -0.31
VCAN-212ENST00000515397 MXRA8Q9BRK3 442 aa13.14□□□□□ -0.31
VCAN-212ENST00000515397 SEZ6LQ9BYH1 1024 aa13.14□□□□□ -0.31
VCAN-212ENST00000515397 SETD4Q9NVD3 440 aa13.14□□□□□ -0.31
VCAN-212ENST00000515397 GTF2IRD1Q9UHL9 959 aa13.14□□□□□ -0.31
VCAN-212ENST00000515397 NID2Q14112 1375 aa13.13□□□□□ -0.31
VCAN-212ENST00000515397 GSTTP1A0A1W2PQM5 241 aa13.13□□□□□ -0.31
VCAN-212ENST00000515397 H3BRB1 525 aa13.13□□□□□ -0.31
VCAN-212ENST00000515397 DDX39AO00148 427 aaKnown RBP13.13□□□□□ -0.31
VCAN-212ENST00000515397 IQCF3P0C7M6 154 aa13.13□□□□□ -0.31
VCAN-212ENST00000515397 MARK3P27448 753 aa13.13□□□□□ -0.31
VCAN-212ENST00000515397 PBX2P40425 430 aa13.13□□□□□ -0.31
VCAN-212ENST00000515397 AK2P54819 239 aa13.13□□□□□ -0.31
VCAN-212ENST00000515397 ARHGAP4P98171 946 aa13.13□□□□□ -0.31
VCAN-212ENST00000515397 PTPN11Q06124 597 aaPredicted RBP13.13□□□□□ -0.31
VCAN-212ENST00000515397 SCRN1Q12765 414 aa13.13□□□□□ -0.31
VCAN-212ENST00000515397 SENP7Q9BQF6 1050 aa13.13□□□□□ -0.31
VCAN-212ENST00000515397 RNF26Q9BY78 433 aaPredicted RBP13.13□□□□□ -0.31
VCAN-212ENST00000515397 ZMYND12Q9H0C1 365 aa13.13□□□□□ -0.31
VCAN-212ENST00000515397 RNPEPQ9H4A4 650 aa13.13□□□□□ -0.31
VCAN-212ENST00000515397 TUT1Q9H6E5 874 aaKnown RBP13.13□□□□□ -0.31
VCAN-212ENST00000515397 EHMT1Q9H9B1 1298 aa13.13□□□□□ -0.31
VCAN-212ENST00000515397 C6orf50Q9HD87 102 aa13.13□□□□□ -0.31
VCAN-212ENST00000515397 KCNH7Q9NS40 1196 aa13.13□□□□□ -0.31
VCAN-212ENST00000515397 GJB4Q9NTQ9 266 aa13.13□□□□□ -0.31
VCAN-212ENST00000515397 DOCK5Q9H7D0 1870 aa13.12□□□□□ -0.31
VCAN-212ENST00000515397 ZBBXA8MT70 800 aa13.12□□□□□ -0.31
VCAN-212ENST00000515397 FAM86B1E9PN63 330 aa13.12□□□□□ -0.31
VCAN-212ENST00000515397 hCG_1984214I3L0E3 225 aa13.12□□□□□ -0.31
VCAN-212ENST00000515397 TREHO43280 583 aa13.12□□□□□ -0.31
VCAN-212ENST00000515397 LARGE1O95461 756 aa13.12□□□□□ -0.31
VCAN-212ENST00000515397 FOSP01100 380 aaPredicted RBP13.12□□□□□ -0.31
VCAN-212ENST00000515397 FAM86B2P0C5J1 330 aa13.12□□□□□ -0.31
VCAN-212ENST00000515397 SMIM10L2AP0DMW4 78 aa13.12□□□□□ -0.31
VCAN-212ENST00000515397 SMIM10L2BP0DMW5 78 aa13.12□□□□□ -0.31
VCAN-212ENST00000515397 TCF7P36402 384 aaPredicted RBP13.12□□□□□ -0.31
VCAN-212ENST00000515397 NLRP5P59047 1200 aa13.12□□□□□ -0.31
VCAN-212ENST00000515397 ITGB3BPQ13352 177 aaPredicted RBP13.12□□□□□ -0.31
VCAN-212ENST00000515397 CEP55Q53EZ4 464 aa13.12□□□□□ -0.31
VCAN-212ENST00000515397 ZNF713Q8N859 430 aaPredicted RBP13.12□□□□□ -0.31
VCAN-212ENST00000515397 ZBTB10Q96DT7 871 aa13.12□□□□□ -0.31
VCAN-212ENST00000515397 KATNAL1Q9BW62 490 aa13.12□□□□□ -0.31
VCAN-212ENST00000515397 FTOQ9C0B1 505 aaKnown RBP eCLIP13.12□□□□□ -0.31
VCAN-212ENST00000515397 SLKQ9H2G2 1235 aaPredicted RBP13.12□□□□□ -0.31
VCAN-212ENST00000515397 MTMR10Q9NXD2 777 aa13.12□□□□□ -0.31
VCAN-212ENST00000515397 KCNJ14Q9UNX9 436 aa13.12□□□□□ -0.31
VCAN-212ENST00000515397 C17orf102A2RUQ5 167 aa13.11□□□□□ -0.31
VCAN-212ENST00000515397 MEIS1O00470 390 aa13.11□□□□□ -0.31
VCAN-212ENST00000515397 EDIL3O43854 480 aa13.11□□□□□ -0.31
VCAN-212ENST00000515397 SREBF1P36956 1147 aa13.11□□□□□ -0.31
VCAN-212ENST00000515397 NEK4P51957 841 aa13.11□□□□□ -0.31
VCAN-212ENST00000515397 RABGGTBP53611 331 aa13.11□□□□□ -0.31
VCAN-212ENST00000515397 GPNMBQ14956 572 aa13.11□□□□□ -0.31
VCAN-212ENST00000515397 SESTD1Q86VW0 696 aa13.11□□□□□ -0.31
VCAN-212ENST00000515397 PLA2G4DQ86XP0 818 aa13.11□□□□□ -0.31
VCAN-212ENST00000515397 TRIM22Q8IYM9 498 aa13.11□□□□□ -0.31
VCAN-212ENST00000515397 RPUSD2Q8IZ73 545 aaKnown RBP13.11□□□□□ -0.31
VCAN-212ENST00000515397 REXO1Q8N1G1 1221 aaKnown RBP13.11□□□□□ -0.31
VCAN-212ENST00000515397 SEPT1Q8WYJ6 367 aa13.11□□□□□ -0.31
VCAN-212ENST00000515397 ATP6V0A1Q93050 837 aa13.11□□□□□ -0.31
VCAN-212ENST00000515397 CDHR1Q96JP9 859 aa13.11□□□□□ -0.31
VCAN-212ENST00000515397 AGO4Q9HCK5 861 aaKnown RBP13.11□□□□□ -0.31
VCAN-212ENST00000515397 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.1□□□□□ -0.31
VCAN-212ENST00000515397 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.1□□□□□ -0.31
VCAN-212ENST00000515397 ESYT2A0FGR8 921 aa13.1□□□□□ -0.31
VCAN-212ENST00000515397 CTDNEP1O95476 244 aa13.1□□□□□ -0.31
VCAN-212ENST00000515397 CKBP12277 381 aa13.1□□□□□ -0.31
VCAN-212ENST00000515397 GNA11P29992 359 aa13.1□□□□□ -0.31
VCAN-212ENST00000515397 FOSBP53539 338 aa13.1□□□□□ -0.31
VCAN-212ENST00000515397 ANAPC15P60006 121 aa13.1□□□□□ -0.31
VCAN-212ENST00000515397 AP3B2Q13367 1082 aa13.1□□□□□ -0.31
VCAN-212ENST00000515397 BFSP2Q13515 415 aa13.1□□□□□ -0.31
VCAN-212ENST00000515397 ME3Q16798 604 aa13.1□□□□□ -0.31
VCAN-212ENST00000515397 TCTN1Q2MV58 587 aa13.1□□□□□ -0.31
VCAN-212ENST00000515397 TRIM71Q2Q1W2 868 aaKnown RBP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms