RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 AP5M1Q9H0R1 490 aa33.52■■■□□ 2.96
LIMCH1-211ENST00000509638 UPF3AQ9H1J1 476 aaKnown RBP33.52■■■□□ 2.96
LIMCH1-211ENST00000509638 Q9Y3F1 56 aa33.52■■■□□ 2.96
LIMCH1-211ENST00000509638 METTL7BQ6UX53 244 aa33.51■■■□□ 2.96
LIMCH1-211ENST00000509638 SLC5A5Q92911 643 aa33.51■■■□□ 2.96
LIMCH1-211ENST00000509638 EMID1Q96A84 441 aaPredicted RBP33.51■■■□□ 2.96
LIMCH1-211ENST00000509638 ABHD8Q96I13 439 aa33.51■■■□□ 2.96
LIMCH1-211ENST00000509638 TMEM106CQ9BVX2 250 aa33.51■■■□□ 2.96
LIMCH1-211ENST00000509638 MLXIPQ9HAP2 919 aa33.51■■■□□ 2.96
LIMCH1-211ENST00000509638 JPH1Q9HDC5 661 aaPredicted RBP33.51■■■□□ 2.96
LIMCH1-211ENST00000509638 NFASCO94856 1347 aa33.51■■■□□ 2.96
LIMCH1-211ENST00000509638 POTEFA5A3E0 1075 aa33.51■■■□□ 2.95
LIMCH1-211ENST00000509638 ADAMTS4O75173 837 aa33.51■■■□□ 2.95
LIMCH1-211ENST00000509638 C6orf222P0C671 652 aaPredicted RBP33.51■■■□□ 2.95
LIMCH1-211ENST00000509638 TMEM60Q9H2L4 133 aa33.51■■■□□ 2.95
LIMCH1-211ENST00000509638 SPC25Q9HBM1 224 aa33.51■■■□□ 2.95
LIMCH1-211ENST00000509638 EIF4ENIF1Q9NRA8 985 aaKnown RBP33.51■■■□□ 2.95
LIMCH1-211ENST00000509638 DNAH12Q6ZR08 3092 aa33.5■■■□□ 2.95
LIMCH1-211ENST00000509638 MYADML2A6NDP7 307 aa33.5■■■□□ 2.95
LIMCH1-211ENST00000509638 DDX39AO00148 427 aaKnown RBP33.5■■■□□ 2.95
LIMCH1-211ENST00000509638 GJA9P57773 515 aa33.5■■■□□ 2.95
LIMCH1-211ENST00000509638 IRX5P78411 483 aaPredicted RBP33.5■■■□□ 2.95
LIMCH1-211ENST00000509638 NUCB2P80303 420 aa33.5■■■□□ 2.95
LIMCH1-211ENST00000509638 SP4Q02446 784 aa33.5■■■□□ 2.95
LIMCH1-211ENST00000509638 LAMC2Q13753 1193 aa33.5■■■□□ 2.95
LIMCH1-211ENST00000509638 LRCH2Q5VUJ6 765 aa33.5■■■□□ 2.95
LIMCH1-211ENST00000509638 HAS1Q92839 578 aa33.5■■■□□ 2.95
LIMCH1-211ENST00000509638 SPATA33Q96N06 139 aa33.5■■■□□ 2.95
LIMCH1-211ENST00000509638 FTOQ9C0B1 505 aaKnown RBP eCLIP33.5■■■□□ 2.95
LIMCH1-211ENST00000509638 TBX3O15119 743 aa33.49■■■□□ 2.95
LIMCH1-211ENST00000509638 GAS7O60861 476 aa33.49■■■□□ 2.95
LIMCH1-211ENST00000509638 MYCNP04198 464 aaPredicted RBP33.49■■■□□ 2.95
LIMCH1-211ENST00000509638 FOXD4L6Q3SYB3 417 aaPredicted RBP33.49■■■□□ 2.95
LIMCH1-211ENST00000509638 FOXD4L3Q6VB84 417 aaPredicted RBP33.49■■■□□ 2.95
LIMCH1-211ENST00000509638 DHX15O43143 795 aaKnown RBP33.48■■■□□ 2.95
LIMCH1-211ENST00000509638 FSCN1Q16658 493 aaKnown RBP33.48■■■□□ 2.95
LIMCH1-211ENST00000509638 AFG1LQ8WV93 481 aa33.48■■■□□ 2.95
LIMCH1-211ENST00000509638 FAM20AQ96MK3 541 aa33.48■■■□□ 2.95
LIMCH1-211ENST00000509638 RIT2Q99578 217 aa33.48■■■□□ 2.95
LIMCH1-211ENST00000509638 TBC1D22BQ9NU19 505 aa33.48■■■□□ 2.95
LIMCH1-211ENST00000509638 CIZ1Q9ULV3 898 aaPredicted RBP33.48■■■□□ 2.95
LIMCH1-211ENST00000509638 CTAGE5O15320 804 aa33.47■■■□□ 2.95
LIMCH1-211ENST00000509638 MARCH6O60337 910 aa33.47■■■□□ 2.95
LIMCH1-211ENST00000509638 SGPL1O95470 568 aa33.47■■■□□ 2.95
LIMCH1-211ENST00000509638 GJA8P48165 433 aa33.47■■■□□ 2.95
LIMCH1-211ENST00000509638 HSDL1Q3SXM5 330 aa33.47■■■□□ 2.95
LIMCH1-211ENST00000509638 PPTC7Q8NI37 304 aa33.47■■■□□ 2.95
LIMCH1-211ENST00000509638 CRISPLD2Q9H0B8 497 aa33.47■■■□□ 2.95
LIMCH1-211ENST00000509638 SLC9A2Q9UBY0 812 aa33.47■■■□□ 2.95
LIMCH1-211ENST00000509638 OGDHLQ9ULD0 1010 aa33.47■■■□□ 2.95
LIMCH1-211ENST00000509638 NOP56O00567 594 aaKnown RBP33.47■■■□□ 2.95
LIMCH1-211ENST00000509638 OR52Z1P0C646 297 aa33.47■■■□□ 2.95
LIMCH1-211ENST00000509638 CPT1AP50416 773 aa33.47■■■□□ 2.95
LIMCH1-211ENST00000509638 BEX3Q00994 111 aa33.47■■■□□ 2.95
LIMCH1-211ENST00000509638 PTGDRQ13258 359 aa33.47■■■□□ 2.95
LIMCH1-211ENST00000509638 MTMR9Q96QG7 549 aa33.47■■■□□ 2.95
LIMCH1-211ENST00000509638 TEKT3Q9BXF9 490 aa33.47■■■□□ 2.95
LIMCH1-211ENST00000509638 TCEAL9Q9UHQ7 104 aa33.47■■■□□ 2.95
LIMCH1-211ENST00000509638 TELO2Q9Y4R8 837 aa33.47■■■□□ 2.95
LIMCH1-211ENST00000509638 PSMD10O75832 226 aa33.46■■■□□ 2.95
LIMCH1-211ENST00000509638 LRRC41Q15345 812 aa33.46■■■□□ 2.95
LIMCH1-211ENST00000509638 RNF180Q86T96 592 aa33.46■■■□□ 2.95
LIMCH1-211ENST00000509638 SLFN12Q8IYM2 578 aa33.46■■■□□ 2.95
LIMCH1-211ENST00000509638 BAG4O95429 457 aaKnown RBP33.45■■■□□ 2.95
LIMCH1-211ENST00000509638 MMP3P08254 477 aa33.45■■■□□ 2.95
LIMCH1-211ENST00000509638 NKX3-2P78367 333 aa33.45■■■□□ 2.95
LIMCH1-211ENST00000509638 USP28Q96RU2 1077 aa33.45■■■□□ 2.95
LIMCH1-211ENST00000509638 CLIC4Q9Y696 253 aa33.45■■■□□ 2.95
LIMCH1-211ENST00000509638 MKI67P46013 3256 aaKnown RBP33.45■■■□□ 2.94
LIMCH1-211ENST00000509638 WDR81Q562E7 1941 aa33.45■■■□□ 2.94
LIMCH1-211ENST00000509638 TFRCP02786 760 aaKnown RBP33.44■■■□□ 2.94
LIMCH1-211ENST00000509638 CST5P28325 142 aaPredicted RBP33.44■■■□□ 2.94
LIMCH1-211ENST00000509638 SF3A1Q15459 793 aaKnown RBP33.44■■■□□ 2.94
LIMCH1-211ENST00000509638 GNASQ5JWF2 1037 aa33.44■■■□□ 2.94
LIMCH1-211ENST00000509638 C4orf32Q8N8J7 132 aa33.44■■■□□ 2.94
LIMCH1-211ENST00000509638 VAV3Q9UKW4 847 aa33.44■■■□□ 2.94
LIMCH1-211ENST00000509638 A6NJR5 290 aa33.43■■■□□ 2.94
LIMCH1-211ENST00000509638 CCNE2O96020 404 aa33.43■■■□□ 2.94
LIMCH1-211ENST00000509638 KRT76Q01546 638 aa33.43■■■□□ 2.94
LIMCH1-211ENST00000509638 CEBPZQ03701 1054 aaKnown RBP33.43■■■□□ 2.94
LIMCH1-211ENST00000509638 BRDTQ58F21 947 aaPredicted RBP33.43■■■□□ 2.94
LIMCH1-211ENST00000509638 ARRDC4Q8NCT1 418 aa33.43■■■□□ 2.94
LIMCH1-211ENST00000509638 KLHDC9Q8NEP7 349 aa33.43■■■□□ 2.94
LIMCH1-211ENST00000509638 ZNF396Q96N95 335 aaPredicted RBP33.43■■■□□ 2.94
LIMCH1-211ENST00000509638 GPR20Q99678 358 aa33.43■■■□□ 2.94
LIMCH1-211ENST00000509638 ELP1O95163 1332 aa33.43■■■□□ 2.94
LIMCH1-211ENST00000509638 CHMP2AO43633 222 aa33.43■■■□□ 2.94
LIMCH1-211ENST00000509638 TXKP42681 527 aa33.43■■■□□ 2.94
LIMCH1-211ENST00000509638 ATP2C1P98194 919 aaPredicted RBP33.43■■■□□ 2.94
LIMCH1-211ENST00000509638 UNC45AQ9H3U1 944 aa33.43■■■□□ 2.94
LIMCH1-211ENST00000509638 CEP131Q9UPN4 1083 aa33.43■■■□□ 2.94
LIMCH1-211ENST00000509638 TCHHQ07283 1943 aa33.42■■■□□ 2.94
LIMCH1-211ENST00000509638 LAD1O00515 517 aa33.42■■■□□ 2.94
LIMCH1-211ENST00000509638 BMP15O95972 392 aa33.42■■■□□ 2.94
LIMCH1-211ENST00000509638 ACTR2P61160 394 aa33.42■■■□□ 2.94
LIMCH1-211ENST00000509638 ZNF746Q6NUN9 644 aaPredicted RBP33.42■■■□□ 2.94
LIMCH1-211ENST00000509638 TTC12Q9H892 705 aaPredicted RBP33.42■■■□□ 2.94
LIMCH1-211ENST00000509638 ATP6V1DQ9Y5K8 247 aa33.41■■■□□ 2.94
LIMCH1-211ENST00000509638 KBTBD13C9JR72 458 aa33.4■■■□□ 2.94
LIMCH1-211ENST00000509638 DNM1LO00429 736 aa33.4■■■□□ 2.94
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms