RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 LRG1P02750 347 aa4.92□□□□□ -1.62
NUP54-208ENST00000508604 SCG5P05408 212 aa4.92□□□□□ -1.62
NUP54-208ENST00000508604 ZNF568Q3ZCX4 644 aa4.92□□□□□ -1.62
NUP54-208ENST00000508604 CRB2Q5IJ48 1285 aa4.92□□□□□ -1.62
NUP54-208ENST00000508604 SEC61A2Q9H9S3 476 aa4.92□□□□□ -1.62
NUP54-208ENST00000508604 ADAM29Q9UKF5 820 aa4.92□□□□□ -1.62
NUP54-208ENST00000508604 TGFB2P61812 414 aa4.91□□□□□ -1.62
NUP54-208ENST00000508604 PRKD1Q15139 912 aaPredicted RBP4.91□□□□□ -1.62
NUP54-208ENST00000508604 TMCO4Q5TGY1 634 aa4.91□□□□□ -1.62
NUP54-208ENST00000508604 CYP4F22Q6NT55 531 aa4.91□□□□□ -1.62
NUP54-208ENST00000508604 GIMAP8Q8ND71 665 aaPredicted RBP4.91□□□□□ -1.62
NUP54-208ENST00000508604 Q8TCH9 128 aa4.91□□□□□ -1.62
NUP54-208ENST00000508604 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.91□□□□□ -1.62
NUP54-208ENST00000508604 PTPN18Q99952 460 aa4.91□□□□□ -1.62
NUP54-208ENST00000508604 LGR4Q9BXB1 951 aa4.91□□□□□ -1.62
NUP54-208ENST00000508604 DLL4Q9NR61 685 aa4.91□□□□□ -1.62
NUP54-208ENST00000508604 NUB1Q9Y5A7 615 aa4.91□□□□□ -1.62
NUP54-208ENST00000508604 CHGBP05060 677 aa4.9□□□□□ -1.62
NUP54-208ENST00000508604 ITGAVP06756 1048 aa4.9□□□□□ -1.62
NUP54-208ENST00000508604 VAMP1P23763 118 aa4.9□□□□□ -1.62
NUP54-208ENST00000508604 CYP4F3Q08477 520 aa4.9□□□□□ -1.62
NUP54-208ENST00000508604 TESK1Q15569 626 aa4.9□□□□□ -1.62
NUP54-208ENST00000508604 SMAD2Q15796 467 aaKnown RBP4.9□□□□□ -1.62
NUP54-208ENST00000508604 ZNF227Q86WZ6 799 aa4.9□□□□□ -1.62
NUP54-208ENST00000508604 FAM169BQ8N8A8 192 aa4.9□□□□□ -1.62
NUP54-208ENST00000508604 HSPBP1Q9NZL4 362 aa4.9□□□□□ -1.62
NUP54-208ENST00000508604 RECKO95980 971 aa4.89□□□□□ -1.63
NUP54-208ENST00000508604 R3HDM1Q15032 1099 aaKnown RBP4.89□□□□□ -1.63
NUP54-208ENST00000508604 Q6ZUG5 572 aa4.89□□□□□ -1.63
NUP54-208ENST00000508604 METTL16Q86W50 562 aaKnown RBP4.89□□□□□ -1.63
NUP54-208ENST00000508604 NT5DC4Q86YG4 428 aa4.89□□□□□ -1.63
NUP54-208ENST00000508604 KREMEN2Q8NCW0 462 aa4.89□□□□□ -1.63
NUP54-208ENST00000508604 LMF1Q96S06 567 aa4.89□□□□□ -1.63
NUP54-208ENST00000508604 MEGF9Q9H1U4 602 aa4.89□□□□□ -1.63
NUP54-208ENST00000508604 FBXL7Q9UJT9 491 aa4.89□□□□□ -1.63
NUP54-208ENST00000508604 AGRPO00253 132 aa4.89□□□□□ -1.63
NUP54-208ENST00000508604 KLF10Q13118 480 aa4.89□□□□□ -1.63
NUP54-208ENST00000508604 PRSS53Q2L4Q9 553 aa4.89□□□□□ -1.63
NUP54-208ENST00000508604 LARP1BQ659C4 914 aaKnown RBP4.89□□□□□ -1.63
NUP54-208ENST00000508604 C6orf15Q6UXA7 325 aaPredicted RBP4.89□□□□□ -1.63
NUP54-208ENST00000508604 NUDT10Q8NFP7 164 aa4.89□□□□□ -1.63
NUP54-208ENST00000508604 TTLL11Q8NHH1 800 aa4.89□□□□□ -1.63
NUP54-208ENST00000508604 NUDT11Q96G61 164 aa4.89□□□□□ -1.63
NUP54-208ENST00000508604 WWC2-AS2Q96NR7 200 aa4.89□□□□□ -1.63
NUP54-208ENST00000508604 ACTR10Q9NZ32 417 aa4.89□□□□□ -1.63
NUP54-208ENST00000508604 ASH2LQ9UBL3 628 aa4.89□□□□□ -1.63
NUP54-208ENST00000508604 INPP5FQ9Y2H2 1132 aa4.89□□□□□ -1.63
NUP54-208ENST00000508604 TBX1O43435 398 aa4.88□□□□□ -1.63
NUP54-208ENST00000508604 LCP1P13796 627 aa4.88□□□□□ -1.63
NUP54-208ENST00000508604 GFRA1P56159 465 aa4.88□□□□□ -1.63
NUP54-208ENST00000508604 FHL2Q14192 279 aa4.88□□□□□ -1.63
NUP54-208ENST00000508604 TNNI3KQ59H18 835 aa4.88□□□□□ -1.63
NUP54-208ENST00000508604 FAM178BQ8IXR5 827 aa4.88□□□□□ -1.63
NUP54-208ENST00000508604 LRRC37BQ96QE4 947 aa4.88□□□□□ -1.63
NUP54-208ENST00000508604 ADOQ96SZ5 270 aa4.88□□□□□ -1.63
NUP54-208ENST00000508604 SLC6A20Q9NP91 592 aa4.88□□□□□ -1.63
NUP54-208ENST00000508604 SLC4A7Q9Y6M7 1214 aa4.88□□□□□ -1.63
NUP54-208ENST00000508604 ARNTLO00327 626 aa4.87□□□□□ -1.63
NUP54-208ENST00000508604 SUSD5O60279 629 aa4.87□□□□□ -1.63
NUP54-208ENST00000508604 DDAH1O94760 285 aa4.87□□□□□ -1.63
NUP54-208ENST00000508604 CNOT4O95628 575 aaKnown RBP4.87□□□□□ -1.63
NUP54-208ENST00000508604 FOXE3Q13461 319 aa4.87□□□□□ -1.63
NUP54-208ENST00000508604 NRN1LQ496H8 165 aa4.87□□□□□ -1.63
NUP54-208ENST00000508604 REXO1L1PQ8IX06 675 aa4.87□□□□□ -1.63
NUP54-208ENST00000508604 DTX3Q8N9I9 347 aa4.87□□□□□ -1.63
NUP54-208ENST00000508604 TMEM145Q8NBT3 493 aa4.87□□□□□ -1.63
NUP54-208ENST00000508604 GNRHR2Q96P88 292 aa4.87□□□□□ -1.63
NUP54-208ENST00000508604 CSRNP2Q9H175 543 aa4.87□□□□□ -1.63
NUP54-208ENST00000508604 ZFR2Q9UPR6 939 aaKnown RBP4.87□□□□□ -1.63
NUP54-208ENST00000508604 NPIPB8E9PQR5 432 aa4.86□□□□□ -1.63
NUP54-208ENST00000508604 SLC27A2O14975 620 aa4.86□□□□□ -1.63
NUP54-208ENST00000508604 KLHL18O94889 574 aa4.86□□□□□ -1.63
NUP54-208ENST00000508604 ENO2P09104 434 aaPredicted RBP4.86□□□□□ -1.63
NUP54-208ENST00000508604 GRIN1Q05586 938 aa4.86□□□□□ -1.63
NUP54-208ENST00000508604 ABHD18Q0P651 414 aa4.86□□□□□ -1.63
NUP54-208ENST00000508604 SF1Q15637 639 aaKnown RBP4.86□□□□□ -1.63
NUP54-208ENST00000508604 TCTN3Q6NUS6 607 aa4.86□□□□□ -1.63
NUP54-208ENST00000508604 KCTD13Q8WZ19 329 aa4.86□□□□□ -1.63
NUP54-208ENST00000508604 AJUBAQ96IF1 538 aa4.86□□□□□ -1.63
NUP54-208ENST00000508604 ARHGAP20Q9P2F6 1191 aa4.86□□□□□ -1.63
NUP54-208ENST00000508604 SSBP05455 408 aaKnown RBP eCLIP4.86□□□□□ -1.63
NUP54-208ENST00000508604 COL6A1P12109 1028 aa4.86□□□□□ -1.63
NUP54-208ENST00000508604 GLRBP48167 497 aa4.86□□□□□ -1.63
NUP54-208ENST00000508604 FXNQ16595 210 aa4.86□□□□□ -1.63
NUP54-208ENST00000508604 TAX1BP1Q86VP1 789 aa4.86□□□□□ -1.63
NUP54-208ENST00000508604 VPS37DQ86XT2 251 aa4.86□□□□□ -1.63
NUP54-208ENST00000508604 PIP4K2CQ8TBX8 421 aa4.86□□□□□ -1.63
NUP54-208ENST00000508604 CCSER2Q9H7U1 834 aa4.86□□□□□ -1.63
NUP54-208ENST00000508604 RBPJLQ9UBG7 517 aa4.86□□□□□ -1.63
NUP54-208ENST00000508604 ZFP69BQ9UJL9 534 aa4.86□□□□□ -1.63
NUP54-208ENST00000508604 ING1Q9UK53 422 aaPredicted RBP4.86□□□□□ -1.63
NUP54-208ENST00000508604 WASF3Q9UPY6 502 aa4.86□□□□□ -1.63
NUP54-208ENST00000508604 WDR33Q9C0J8 1336 aaKnown RBP4.86□□□□□ -1.63
NUP54-208ENST00000508604 H0Y858 1186 aa4.85□□□□□ -1.63
NUP54-208ENST00000508604 SMAD7O15105 426 aaKnown RBP4.85□□□□□ -1.63
NUP54-208ENST00000508604 CKMP06732 381 aa4.85□□□□□ -1.63
NUP54-208ENST00000508604 COMTP21964 271 aa4.85□□□□□ -1.63
NUP54-208ENST00000508604 HDLBPQ00341 1268 aaKnown RBP4.85□□□□□ -1.63
NUP54-208ENST00000508604 PURAQ00577 322 aaKnown RBP4.85□□□□□ -1.63
NUP54-208ENST00000508604 SPIRE1Q08AE8 756 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms