RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 EMC4Q5J8M3 183 aa5.62□□□□□ -1.51
HMGB1P28-201ENST00000507778 RNF219Q5W0B1 726 aaPredicted RBP5.62□□□□□ -1.51
HMGB1P28-201ENST00000507778 PAQR3Q6TCH7 311 aa5.62□□□□□ -1.51
HMGB1P28-201ENST00000507778 HHIPL2Q6UWX4 724 aa5.62□□□□□ -1.51
HMGB1P28-201ENST00000507778 OTOP1Q7RTM1 612 aa5.62□□□□□ -1.51
HMGB1P28-201ENST00000507778 ATG4DQ86TL0 474 aaPredicted RBP5.62□□□□□ -1.51
HMGB1P28-201ENST00000507778 SMC1BQ8NDV3 1235 aa5.62□□□□□ -1.51
HMGB1P28-201ENST00000507778 UHMK1Q8TAS1 419 aaKnown RBP5.62□□□□□ -1.51
HMGB1P28-201ENST00000507778 PEX11GQ96HA9 241 aa5.62□□□□□ -1.51
HMGB1P28-201ENST00000507778 GPR101Q96P66 508 aaPredicted RBP5.62□□□□□ -1.51
HMGB1P28-201ENST00000507778 BOCQ9BWV1 1114 aa5.62□□□□□ -1.51
HMGB1P28-201ENST00000507778 TNFRSF12AQ9NP84 129 aa5.62□□□□□ -1.51
HMGB1P28-201ENST00000507778 THG1LQ9NWX6 298 aaKnown RBP5.62□□□□□ -1.51
HMGB1P28-201ENST00000507778 DDX56Q9NY93 547 aaKnown RBP5.62□□□□□ -1.51
HMGB1P28-201ENST00000507778 ZC3H12DA2A288 527 aaKnown RBP5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 F8W031 263 aaPredicted RBP5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 NEMP1O14524 444 aa5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 SLC27A2O14975 620 aa5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 TADA3O75528 432 aa5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 FKBP9O95302 570 aa5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 MPOP05164 745 aa5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 DBHP09172 617 aa5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 ATP2A2P16615 1042 aaKnown RBP5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 PMLP29590 882 aa5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 KPNA1P52294 538 aaPredicted RBP5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 ERVFRD-1P60508 538 aa5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 NR1I3Q14994 352 aa5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 FYB2Q5VWT5 728 aa5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 FKBP9P1Q75LS8 142 aa5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 FERMT3Q86UX7 667 aa5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 C11orf74Q86VG3 221 aa5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 PHOSPHO1Q8TCT1 267 aa5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 SH3RF2Q8TEC5 729 aa5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 CHTF18Q8WVB6 975 aa5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 RXFP1Q9HBX9 757 aa5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 TYW1Q9NV66 732 aaKnown RBP5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 DBR1Q9UK59 544 aaKnown RBP5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 SRPK3Q9UPE1 567 aa5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 ATP23Q9Y6H3 246 aa5.61□□□□□ -1.51
HMGB1P28-201ENST00000507778 PHLDB1Q86UU1 1377 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 H7C1D1 291 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 MAN2B1O00754 1011 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 KCNK3O14649 394 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 SGSM2O43147 1006 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 GPR39O43194 453 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 RAB11FIP3O75154 756 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 KRT37O76014 449 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 ZBTB48P10074 688 aaPredicted RBP5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 ADCYAP1R1P41586 468 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 ID4P47928 161 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 LSSP48449 732 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 IRF9Q00978 393 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 FIGNQ5HY92 759 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 ADGRF1Q5T601 910 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 MILR1Q7Z6M3 343 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 TRIM48Q8IWZ4 208 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 INTS4Q96HW7 963 aaKnown RBP5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 SCYL1Q96KG9 808 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 CD244Q9BZW8 370 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 SLC6A17Q9H1V8 727 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 OXSMQ9NWU1 459 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 MYOTQ9UBF9 498 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 PALD1Q9ULE6 856 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 APOBEC2Q9Y235 224 aaKnown RBP5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 ZNF652Q9Y2D9 606 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 SIT1Q9Y3P8 196 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 PCDHB4Q9Y5E5 795 aa5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 OAS3Q9Y6K5 1087 aaKnown RBP5.6□□□□□ -1.51
HMGB1P28-201ENST00000507778 NUDT19A8MXV4 375 aa5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 BIN1O00499 593 aa5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 SCDO00767 359 aa5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 CLASP2O75122 1294 aaKnown RBP5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 HIP1RO75146 1068 aa5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 ZBTB7AO95365 584 aa5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 PDGFRBP09619 1106 aa5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 SDHBP21912 280 aa5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 GUCY2FP51841 1108 aa5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 TMPRSS15P98073 1019 aa5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 FAM50AQ14320 339 aaKnown RBP5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 SLC9A5Q14940 896 aa5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 RAB3GAP1Q15042 981 aa5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 ZNF174Q15697 407 aa5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 ATP13A4Q4VNC1 1196 aa5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 LHFPL2Q6ZUX7 228 aa5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 KCTD1Q719H9 257 aa5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 CBLL1Q75N03 491 aa5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 NECAB2Q7Z6G3 386 aa5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 SPATS2Q86XZ4 545 aaKnown RBP5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 PASD1Q8IV76 773 aa5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 RBM12BQ8IXT5 1001 aaKnown RBP5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 STAG1Q8WVM7 1258 aa5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 SPTLC3Q9NUV7 552 aa5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 SLC5A4Q9NY91 659 aa5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 ASH2LQ9UBL3 628 aa5.59□□□□□ -1.51
HMGB1P28-201ENST00000507778 WASHC2CQ9Y4E1 1318 aa5.58□□□□□ -1.52
HMGB1P28-201ENST00000507778 OR14I1A6ND48 311 aa5.58□□□□□ -1.52
HMGB1P28-201ENST00000507778 GLI1P08151 1106 aa5.58□□□□□ -1.52
HMGB1P28-201ENST00000507778 YBX3P16989 372 aaKnown RBP eCLIP5.58□□□□□ -1.52
HMGB1P28-201ENST00000507778 GJA4P35212 333 aa5.58□□□□□ -1.52
HMGB1P28-201ENST00000507778 PDE6BP35913 854 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms