RNA–Protein interactions for RNA: ENST00000506924.1

CLCN3-205, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 4

Gene CLCN3, Length 567 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-205ENST00000506924 ATG4CQ96DT6 458 aa11.13□□□□□ -0.63
CLCN3-205ENST00000506924 TMEM47Q9BQJ4 181 aa11.13□□□□□ -0.63
CLCN3-205ENST00000506924 BTBD7Q9P203 1132 aa11.13□□□□□ -0.63
CLCN3-205ENST00000506924 ZSWIM5Q9P217 1185 aa11.13□□□□□ -0.63
CLCN3-205ENST00000506924 BIN2Q9UBW5 565 aaPredicted RBP11.13□□□□□ -0.63
CLCN3-205ENST00000506924 KCNMB2Q9Y691 235 aa11.13□□□□□ -0.63
CLCN3-205ENST00000506924 E7EWF7 191 aa11.12□□□□□ -0.63
CLCN3-205ENST00000506924 SLC27A2O14975 620 aa11.12□□□□□ -0.63
CLCN3-205ENST00000506924 PDGFAP04085 211 aa11.12□□□□□ -0.63
CLCN3-205ENST00000506924 PCP11498 1178 aaKnown RBP11.12□□□□□ -0.63
CLCN3-205ENST00000506924 BMP4P12644 408 aa11.12□□□□□ -0.63
CLCN3-205ENST00000506924 FCGRTP55899 365 aa11.12□□□□□ -0.63
CLCN3-205ENST00000506924 ERVK-24P63145 666 aa11.12□□□□□ -0.63
CLCN3-205ENST00000506924 SPEM2Q0P670 501 aa11.12□□□□□ -0.63
CLCN3-205ENST00000506924 CCINQ13939 588 aa11.12□□□□□ -0.63
CLCN3-205ENST00000506924 PLS1Q14651 629 aa11.12□□□□□ -0.63
CLCN3-205ENST00000506924 FAM110CQ1W6H9 321 aa11.12□□□□□ -0.63
CLCN3-205ENST00000506924 WDR78Q5VTH9 848 aa11.12□□□□□ -0.63
CLCN3-205ENST00000506924 CREB3L3Q68CJ9 461 aa11.12□□□□□ -0.63
CLCN3-205ENST00000506924 KCTD1Q719H9 257 aa11.12□□□□□ -0.63
CLCN3-205ENST00000506924 RGL4Q8IZJ4 473 aa11.12□□□□□ -0.63
CLCN3-205ENST00000506924 GPR152Q8TDT2 470 aa11.12□□□□□ -0.63
CLCN3-205ENST00000506924 GSX2Q9BZM3 304 aa11.12□□□□□ -0.63
CLCN3-205ENST00000506924 KRT23Q9C075 422 aa11.12□□□□□ -0.63
CLCN3-205ENST00000506924 BRPF3Q9ULD4 1205 aa11.12□□□□□ -0.63
CLCN3-205ENST00000506924 GABRQQ9UN88 632 aa11.12□□□□□ -0.63
CLCN3-205ENST00000506924 MGAMO43451 1857 aa11.12□□□□□ -0.63
CLCN3-205ENST00000506924 FRMPD2Q68DX3 1309 aaPredicted RBP11.11□□□□□ -0.63
CLCN3-205ENST00000506924 RLFQ13129 1914 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 TNPO2O14787 897 aaKnown RBP11.11□□□□□ -0.63
CLCN3-205ENST00000506924 ARAFP10398 606 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 BMP3P12645 472 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 SLC1A4P43007 532 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 SNAP25P60880 206 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 CTBSQ01459 385 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 PRKCZQ05513 592 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 TRDNQ13061 729 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 IKQ13123 557 aaPredicted RBP11.11□□□□□ -0.63
CLCN3-205ENST00000506924 COL9A3Q14050 684 aaPredicted RBP11.11□□□□□ -0.63
CLCN3-205ENST00000506924 CCDC96Q2M329 555 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 RCSD1Q6JBY9 416 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 PDE12Q6L8Q7 609 aaKnown RBP11.11□□□□□ -0.63
CLCN3-205ENST00000506924 XKR5Q6UX68 686 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 ATCAYQ86WG3 371 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 GMCL1P1Q8NEA9 526 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 EDEM1Q92611 657 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 ABHD8Q96I13 439 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 RBCK1Q9BYM8 510 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 PORCNQ9H237 461 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 CNNM2Q9H8M5 875 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 TCP11L1Q9NUJ3 509 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 HOXC10Q9NYD6 342 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 MORF4L1Q9UBU8 362 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 DCTN4Q9UJW0 460 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 PTPN22Q9Y2R2 807 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 PTCH2Q9Y6C5 1203 aa11.11□□□□□ -0.63
CLCN3-205ENST00000506924 TNKSO95271 1327 aa11.1□□□□□ -0.63
CLCN3-205ENST00000506924 PARP14Q460N5 1801 aa11.1□□□□□ -0.63
CLCN3-205ENST00000506924 TMEM232C9JQI7 657 aa11.1□□□□□ -0.63
CLCN3-205ENST00000506924 TOP1P11387 765 aaKnown RBP11.1□□□□□ -0.63
CLCN3-205ENST00000506924 NOVP48745 357 aa11.1□□□□□ -0.63
CLCN3-205ENST00000506924 ARHGEF6Q15052 776 aa11.1□□□□□ -0.63
CLCN3-205ENST00000506924 NECTIN1Q15223 517 aa11.1□□□□□ -0.63
CLCN3-205ENST00000506924 RNFT1Q5M7Z0 435 aa11.1□□□□□ -0.63
CLCN3-205ENST00000506924 LCE2CQ5TA81 110 aa11.1□□□□□ -0.63
CLCN3-205ENST00000506924 ZNF468Q5VIY5 522 aaPredicted RBP11.1□□□□□ -0.63
CLCN3-205ENST00000506924 TTBK2Q6IQ55 1244 aa11.1□□□□□ -0.63
CLCN3-205ENST00000506924 FBXO46Q6PJ61 603 aaPredicted RBP11.1□□□□□ -0.63
CLCN3-205ENST00000506924 LBX2Q6XYB7 198 aa11.1□□□□□ -0.63
CLCN3-205ENST00000506924 RALYLQ86SE5 291 aaKnown RBP11.1□□□□□ -0.63
CLCN3-205ENST00000506924 IQCA1Q86XH1 822 aa11.1□□□□□ -0.63
CLCN3-205ENST00000506924 CCAR1Q8IX12 1150 aaKnown RBP11.1□□□□□ -0.63
CLCN3-205ENST00000506924 GJD3Q8N144 294 aa11.1□□□□□ -0.63
CLCN3-205ENST00000506924 CMTR1Q8N1G2 835 aaKnown RBP11.1□□□□□ -0.63
CLCN3-205ENST00000506924 ENAHQ8N8S7 591 aaPredicted RBP11.1□□□□□ -0.63
CLCN3-205ENST00000506924 SLF1Q9BQI6 1058 aa11.1□□□□□ -0.63
CLCN3-205ENST00000506924 UBAC1Q9BSL1 405 aa11.1□□□□□ -0.63
CLCN3-205ENST00000506924 GZF1Q9H116 711 aaPredicted RBP11.1□□□□□ -0.63
CLCN3-205ENST00000506924 CWC22Q9HCG8 908 aaKnown RBP11.1□□□□□ -0.63
CLCN3-205ENST00000506924 PPP1R9AQ9ULJ8 1098 aa11.1□□□□□ -0.63
CLCN3-205ENST00000506924 RABGAP1Q9Y3P9 1069 aa11.1□□□□□ -0.63
CLCN3-205ENST00000506924 MYPNQ86TC9 1320 aa11.09□□□□□ -0.63
CLCN3-205ENST00000506924 COL11A1P12107 1806 aaPredicted RBP11.09□□□□□ -0.63
CLCN3-205ENST00000506924 CCDC85CA6NKD9 419 aa11.09□□□□□ -0.63
CLCN3-205ENST00000506924 VWA5AO00534 786 aa11.09□□□□□ -0.63
CLCN3-205ENST00000506924 XYLBO75191 536 aa11.09□□□□□ -0.63
CLCN3-205ENST00000506924 GOLGA8HP0CJ92 632 aa11.09□□□□□ -0.63
CLCN3-205ENST00000506924 SLC16A2P36021 539 aa11.09□□□□□ -0.63
CLCN3-205ENST00000506924 GMPRP36959 345 aa11.09□□□□□ -0.63
CLCN3-205ENST00000506924 KRT76Q01546 638 aa11.09□□□□□ -0.63
CLCN3-205ENST00000506924 DNM1Q05193 864 aaKnown RBP11.09□□□□□ -0.63
CLCN3-205ENST00000506924 TMEM132BQ14DG7 1078 aa11.09□□□□□ -0.63
CLCN3-205ENST00000506924 PKN2Q16513 984 aaKnown RBP11.09□□□□□ -0.63
CLCN3-205ENST00000506924 CPXCR1Q8N123 301 aa11.09□□□□□ -0.63
CLCN3-205ENST00000506924 TTC16Q8NEE8 873 aa11.09□□□□□ -0.63
CLCN3-205ENST00000506924 NCOA7Q8NI08 942 aa11.09□□□□□ -0.63
CLCN3-205ENST00000506924 RAET1EQ8TD07 263 aa11.09□□□□□ -0.63
CLCN3-205ENST00000506924 SH3TC2Q8TF17 1288 aa11.09□□□□□ -0.63
CLCN3-205ENST00000506924 COA7Q96BR5 231 aa11.09□□□□□ -0.63
CLCN3-205ENST00000506924 MOV10L1Q9BXT6 1211 aaKnown RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms