RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 ICAM3P32942 547 aa20.64■□□□□ 0.89
SQSTM1-209ENST00000504627 FGD1P98174 961 aa20.64■□□□□ 0.89
SQSTM1-209ENST00000504627 PCNX4Q63HM2 1172 aa20.64■□□□□ 0.89
SQSTM1-209ENST00000504627 APOA5Q6Q788 366 aa20.64■□□□□ 0.89
SQSTM1-209ENST00000504627 CYFIP1Q7L576 1253 aa20.64■□□□□ 0.89
SQSTM1-209ENST00000504627 HEATR3Q7Z4Q2 680 aa20.64■□□□□ 0.89
SQSTM1-209ENST00000504627 NLRX1Q86UT6 975 aa20.64■□□□□ 0.89
SQSTM1-209ENST00000504627 FBXL16Q8N461 479 aa20.64■□□□□ 0.89
SQSTM1-209ENST00000504627 VWCEQ96DN2 955 aa20.64■□□□□ 0.89
SQSTM1-209ENST00000504627 GAS2L1Q99501 681 aaPredicted RBP20.64■□□□□ 0.89
SQSTM1-209ENST00000504627 NKX2-4Q9H2Z4 354 aa20.64■□□□□ 0.89
SQSTM1-209ENST00000504627 SPATA31C2B4DYI2 1134 aa20.63■□□□□ 0.89
SQSTM1-209ENST00000504627 ZBTB43O43298 467 aa20.63■□□□□ 0.89
SQSTM1-209ENST00000504627 SELPP16109 830 aa20.63■□□□□ 0.89
SQSTM1-209ENST00000504627 RABGGTBP53611 331 aa20.63■□□□□ 0.89
SQSTM1-209ENST00000504627 AK2P54819 239 aa20.63■□□□□ 0.89
SQSTM1-209ENST00000504627 EXOSC10Q01780 885 aaKnown RBP20.63■□□□□ 0.89
SQSTM1-209ENST00000504627 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.63■□□□□ 0.893e-7■■■□□ 14.7
SQSTM1-209ENST00000504627 DAXXQ9UER7 740 aaPredicted RBP20.63■□□□□ 0.89
SQSTM1-209ENST00000504627 NAP1L2Q9ULW6 460 aaPredicted RBP20.63■□□□□ 0.89
SQSTM1-209ENST00000504627 SPDYE3A6NKU9 549 aa20.62■□□□□ 0.89
SQSTM1-209ENST00000504627 PTK7Q13308 1070 aa20.62■□□□□ 0.89
SQSTM1-209ENST00000504627 RTN1Q16799 776 aa20.62■□□□□ 0.89
SQSTM1-209ENST00000504627 METTL7BQ6UX53 244 aa20.62■□□□□ 0.89
SQSTM1-209ENST00000504627 LRRC8DQ7L1W4 858 aa20.62■□□□□ 0.89
SQSTM1-209ENST00000504627 DHX38Q92620 1227 aaKnown RBP20.62■□□□□ 0.89
SQSTM1-209ENST00000504627 CTAGE1Q96RT6 745 aa20.62■□□□□ 0.89
SQSTM1-209ENST00000504627 C16orf70Q9BSU1 422 aa20.62■□□□□ 0.89
SQSTM1-209ENST00000504627 AGXT2Q9BYV1 514 aa20.62■□□□□ 0.89
SQSTM1-209ENST00000504627 PRDM12Q9H4Q4 367 aa20.62■□□□□ 0.89
SQSTM1-209ENST00000504627 BCAS3Q9H6U6 928 aa20.62■□□□□ 0.89
SQSTM1-209ENST00000504627 YBX2Q9Y2T7 364 aaKnown RBP20.62■□□□□ 0.89
SQSTM1-209ENST00000504627 H3BRB1 525 aa20.61■□□□□ 0.89
SQSTM1-209ENST00000504627 PARNO95453 639 aaKnown RBP20.61■□□□□ 0.89
SQSTM1-209ENST00000504627 LGALS2P05162 132 aa20.61■□□□□ 0.89
SQSTM1-209ENST00000504627 CKBP12277 381 aa20.61■□□□□ 0.89
SQSTM1-209ENST00000504627 ZNF200P98182 395 aaPredicted RBP20.61■□□□□ 0.89
SQSTM1-209ENST00000504627 SP4Q02446 784 aa20.61■□□□□ 0.89
SQSTM1-209ENST00000504627 SEMA3FQ13275 785 aa20.61■□□□□ 0.89
SQSTM1-209ENST00000504627 UBE2SQ16763 222 aa20.61■□□□□ 0.89
SQSTM1-209ENST00000504627 TUT1Q9H6E5 874 aaKnown RBP20.61■□□□□ 0.89
SQSTM1-209ENST00000504627 BRPF3Q9ULD4 1205 aa20.61■□□□□ 0.89
SQSTM1-209ENST00000504627 PCDHA11Q9Y5I1 949 aa20.61■□□□□ 0.89
SQSTM1-209ENST00000504627 SCN5AQ14524 2016 aa20.61■□□□□ 0.89
SQSTM1-209ENST00000504627 KLF18A0A0U1RQI7 1052 aa20.6■□□□□ 0.89
SQSTM1-209ENST00000504627 C17orf102A2RUQ5 167 aa20.6■□□□□ 0.89
SQSTM1-209ENST00000504627 GOLGA8AA7E2F4 631 aa20.6■□□□□ 0.89
SQSTM1-209ENST00000504627 GOLGA8BA8MQT2 603 aa20.6■□□□□ 0.89
SQSTM1-209ENST00000504627 NAPAP54920 295 aa20.6■□□□□ 0.89
SQSTM1-209ENST00000504627 PPP2R2DQ66LE6 453 aa20.6■□□□□ 0.89
SQSTM1-209ENST00000504627 GIMAP8Q8ND71 665 aaPredicted RBP20.6■□□□□ 0.89
SQSTM1-209ENST00000504627 CDHR1Q96JP9 859 aa20.6■□□□□ 0.89
SQSTM1-209ENST00000504627 SLC9A7Q96T83 725 aa20.6■□□□□ 0.89
SQSTM1-209ENST00000504627 SENP7Q9BQF6 1050 aa20.6■□□□□ 0.89
SQSTM1-209ENST00000504627 EHMT1Q9H9B1 1298 aa20.6■□□□□ 0.89
SQSTM1-209ENST00000504627 LIMCH1Q9UPQ0 1083 aa20.6■□□□□ 0.89
SQSTM1-209ENST00000504627 BAIAP3O94812 1187 aa20.59■□□□□ 0.89
SQSTM1-209ENST00000504627 KCNJ6P48051 423 aa20.59■□□□□ 0.89
SQSTM1-209ENST00000504627 RBL2Q08999 1139 aa20.59■□□□□ 0.89
SQSTM1-209ENST00000504627 TOB2Q14106 344 aaPredicted RBP20.59■□□□□ 0.89
SQSTM1-209ENST00000504627 UTP14CQ5TAP6 766 aaKnown RBP20.59■□□□□ 0.89
SQSTM1-209ENST00000504627 Q6ZUG5 572 aa20.59■□□□□ 0.89
SQSTM1-209ENST00000504627 PHOSPHO2Q8TCD6 241 aa20.59■□□□□ 0.89
SQSTM1-209ENST00000504627 ATP6V0A1Q93050 837 aa20.59■□□□□ 0.89
SQSTM1-209ENST00000504627 GPRASP2Q96D09 838 aa20.59■□□□□ 0.89
SQSTM1-209ENST00000504627 GPR20Q99678 358 aa20.59■□□□□ 0.89
SQSTM1-209ENST00000504627 SH2B1Q9NRF2 756 aaPredicted RBP20.59■□□□□ 0.89
SQSTM1-209ENST00000504627 ZNF215Q9UL58 517 aaPredicted RBP20.59■□□□□ 0.89
SQSTM1-209ENST00000504627 PCDHA6Q9UN73 950 aa20.59■□□□□ 0.89
SQSTM1-209ENST00000504627 PCDHA8Q9Y5H6 950 aa20.59■□□□□ 0.89
SQSTM1-209ENST00000504627 TRIP12Q14669 1992 aaPredicted RBP20.59■□□□□ 0.89
SQSTM1-209ENST00000504627 CNTNAP5Q8WYK1 1306 aa20.58■□□□□ 0.89
SQSTM1-209ENST00000504627 KIF28PB7ZC32 967 aa20.58■□□□□ 0.89
SQSTM1-209ENST00000504627 SMIM10L2AP0DMW4 78 aa20.58■□□□□ 0.89
SQSTM1-209ENST00000504627 SMIM10L2BP0DMW5 78 aa20.58■□□□□ 0.89
SQSTM1-209ENST00000504627 MYOGP15173 224 aa20.58■□□□□ 0.89
SQSTM1-209ENST00000504627 WWC2Q6AWC2 1192 aa20.58■□□□□ 0.89
SQSTM1-209ENST00000504627 ZSCAN31Q96LW9 406 aaPredicted RBP20.58■□□□□ 0.89
SQSTM1-209ENST00000504627 V9GY48 417 aaPredicted RBP20.58■□□□□ 0.89
SQSTM1-209ENST00000504627 TANC1Q9C0D5 1861 aa20.58■□□□□ 0.88
SQSTM1-209ENST00000504627 UNC80Q8N2C7 3258 aa20.57■□□□□ 0.88
SQSTM1-209ENST00000504627 IGFBP4P22692 258 aa20.57■□□□□ 0.88
SQSTM1-209ENST00000504627 THPOP40225 353 aa20.57■□□□□ 0.88
SQSTM1-209ENST00000504627 MYO9BQ13459 2157 aa20.57■□□□□ 0.88
SQSTM1-209ENST00000504627 MTMR1Q13613 665 aa20.57■□□□□ 0.88
SQSTM1-209ENST00000504627 HIC1Q14526 733 aa20.57■□□□□ 0.88
SQSTM1-209ENST00000504627 ZNF618Q5T7W0 954 aa20.57■□□□□ 0.88
SQSTM1-209ENST00000504627 CNKSR3Q6P9H4 555 aa20.57■□□□□ 0.88
SQSTM1-209ENST00000504627 PPM1EQ8WY54 764 aa20.57■□□□□ 0.88
SQSTM1-209ENST00000504627 TMX3Q96JJ7 454 aa20.57■□□□□ 0.88
SQSTM1-209ENST00000504627 EYSQ5T1H1 3165 aa20.56■□□□□ 0.88
SQSTM1-209ENST00000504627 hCG_1984214I3L0E3 225 aa20.56■□□□□ 0.88
SQSTM1-209ENST00000504627 NBNO60934 754 aa20.56■□□□□ 0.88
SQSTM1-209ENST00000504627 GNAT1P11488 350 aa20.56■□□□□ 0.88
SQSTM1-209ENST00000504627 METAP2P50579 478 aaKnown RBP eCLIP20.56■□□□□ 0.88
SQSTM1-209ENST00000504627 GPNMBQ14956 572 aa20.56■□□□□ 0.88
SQSTM1-209ENST00000504627 TRIM71Q2Q1W2 868 aaKnown RBP20.56■□□□□ 0.88
SQSTM1-209ENST00000504627 PPP1R18Q6NYC8 613 aa20.56■□□□□ 0.88
SQSTM1-209ENST00000504627 SERINC5Q86VE9 423 aa20.56■□□□□ 0.88
SQSTM1-209ENST00000504627 ZNF713Q8N859 430 aaPredicted RBP20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms