RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 ASTE1Q2TB18 679 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-204ENST00000501271 CCDC40Q4G0X9 1142 aa10.91□□□□□ -0.66
CLIP1-204ENST00000501271 SH3BP5LQ7L8J4 393 aa10.91□□□□□ -0.66
CLIP1-204ENST00000501271 GPBP1Q86WP2 473 aa10.91□□□□□ -0.66
CLIP1-204ENST00000501271 SIAH1Q8IUQ4 282 aa10.91□□□□□ -0.66
CLIP1-204ENST00000501271 TRIM58Q8NG06 486 aa10.91□□□□□ -0.66
CLIP1-204ENST00000501271 CAGE1Q8TC20 777 aa10.91□□□□□ -0.66
CLIP1-204ENST00000501271 DCAF4Q8WV16 495 aa10.91□□□□□ -0.66
CLIP1-204ENST00000501271 MKL1Q969V6 931 aa10.91□□□□□ -0.66
CLIP1-204ENST00000501271 RPGRIP1Q96KN7 1286 aa10.91□□□□□ -0.66
CLIP1-204ENST00000501271 DRC1Q96MC2 740 aa10.91□□□□□ -0.66
CLIP1-204ENST00000501271 SNX12Q9UMY4 172 aa10.91□□□□□ -0.66
CLIP1-204ENST00000501271 POTEFA5A3E0 1075 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 EIF3JO75822 258 aaKnown RBP10.9□□□□□ -0.66
CLIP1-204ENST00000501271 NOL4O94818 638 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 POTEIP0CG38 1075 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 TAL1P17542 331 aaPredicted RBP10.9□□□□□ -0.66
CLIP1-204ENST00000501271 USP11P51784 963 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 APBA1Q02410 837 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 GFPT1Q06210 699 aaPredicted RBP10.9□□□□□ -0.66
CLIP1-204ENST00000501271 CERKLQ49MI3 558 aaPredicted RBP10.9□□□□□ -0.66
CLIP1-204ENST00000501271 HGSNATQ68CP4 663 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 POTEGQ6S5H5 508 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 POTEEQ6S8J3 1075 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 CACNA2D4Q7Z3S7 1137 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 SCFD1Q8WVM8 642 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 CRYGNQ8WXF5 182 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 MBOAT7Q96N66 472 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 NAP1L4Q99733 375 aaKnown RBP10.9□□□□□ -0.66
CLIP1-204ENST00000501271 KCTD10Q9H3F6 313 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 KANSL2Q9H9L4 492 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 NLRC4Q9NPP4 1024 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 NYAP2Q9P242 653 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 SALL4Q9UJQ4 1053 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 ADAM21Q9UKJ8 722 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 JRKLQ9Y4A0 524 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 SLX4Q8IY92 1834 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 CYP3A7-CYP3A51PA0A087WV96 503 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 CCDC66A2RUB6 948 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 TACC1O75410 805 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 ZMYND10O75800 440 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 CYP3A7P24462 503 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 ALDH1B1P30837 517 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 SPIRE1Q08AE8 756 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 GPS2Q13227 327 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 ARSHQ5FYA8 562 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 HERC4Q5GLZ8 1057 aaPredicted RBP10.9□□□□□ -0.66
CLIP1-204ENST00000501271 COL23A1Q86Y22 540 aaPredicted RBP10.9□□□□□ -0.66
CLIP1-204ENST00000501271 CREG2Q8IUH2 290 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 CCDC65Q8IXS2 484 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 ETNPPLQ8TBG4 499 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 COG1Q8WTW3 980 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 GLT8D2Q9H1C3 349 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 BMP2KQ9NSY1 1161 aaPredicted RBP10.9□□□□□ -0.66
CLIP1-204ENST00000501271 VPS18Q9P253 973 aa10.9□□□□□ -0.66
CLIP1-204ENST00000501271 KIF13BQ9NQT8 1826 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 FRMD3A2A2Y4 597 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 TARSL2A2RTX5 802 aaKnown RBP10.89□□□□□ -0.67
CLIP1-204ENST00000501271 TLR2O60603 784 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 GDF11O95390 407 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 HOXD11P31277 338 aaPredicted RBP10.89□□□□□ -0.67
CLIP1-204ENST00000501271 SLC12A3P55017 1021 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 ARHGAP4P98171 946 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 ICA1Q05084 483 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 TRIM59Q8IWR1 403 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 GSPT2Q8IYD1 628 aaKnown RBP10.89□□□□□ -0.67
CLIP1-204ENST00000501271 ANKRD13CQ8N6S4 541 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 CEP63Q96MT8 703 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 LSM14BQ9BX40 385 aaKnown RBP10.89□□□□□ -0.67
CLIP1-204ENST00000501271 DHX36Q9H2U1 1008 aaKnown RBP10.89□□□□□ -0.67
CLIP1-204ENST00000501271 CEP72Q9P209 647 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 PI4KBQ9UBF8 816 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 PJA2O43164 708 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 MYBL2P10244 700 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 MAGEA1P43355 309 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 CASP5P51878 434 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 RBM5P52756 815 aaKnown RBP eCLIP10.89□□□□□ -0.67
CLIP1-204ENST00000501271 AP3B2Q13367 1082 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 USH1GQ495M9 461 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 PRR16Q569H4 304 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 TATDN1Q6P1N9 297 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 NFRKBQ6P4R8 1299 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 KRT27Q7Z3Y8 459 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 PODNQ7Z5L7 613 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 NLGN1Q8N2Q7 840 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 LENG9Q96B70 501 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 MASTLQ96GX5 879 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 CRACR2AQ9BSW2 395 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 IDI2Q9BXS1 227 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 EDEM3Q9BZQ6 932 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 EMILIN3Q9NT22 766 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 FAN1Q9Y2M0 1017 aa10.89□□□□□ -0.67
CLIP1-204ENST00000501271 SSU72P8A0A1W2PR75 194 aa10.88□□□□□ -0.67
CLIP1-204ENST00000501271 MEIS1O00470 390 aa10.88□□□□□ -0.67
CLIP1-204ENST00000501271 MMP10P09238 476 aa10.88□□□□□ -0.67
CLIP1-204ENST00000501271 PDE6BP35913 854 aa10.88□□□□□ -0.67
CLIP1-204ENST00000501271 MARSP56192 900 aaKnown RBP10.88□□□□□ -0.67
CLIP1-204ENST00000501271 PSMC6P62333 389 aa10.88□□□□□ -0.67
CLIP1-204ENST00000501271 RASSF7Q02833 373 aa10.88□□□□□ -0.67
CLIP1-204ENST00000501271 TDRD12Q587J7 1177 aaKnown RBP10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms