RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 DYMQ7RTS9 669 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 MYCT1Q8N699 235 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 GPRC5AQ8NFJ5 357 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 GLIS2Q9BZE0 524 aaPredicted RBP9.29□□□□□ -0.92
USP54-215ENST00000497106 AFG3L2Q9Y4W6 797 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 MANSC4A6NHS7 340 aaPredicted RBP9.29□□□□□ -0.92
USP54-215ENST00000497106 POTEMA6NI47 508 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 TUBB4AP04350 444 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 NR3C2P08235 984 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 RPA1P27694 616 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 DPYDQ12882 1025 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 DPP9Q86TI2 863 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 RIOX2Q8IUF8 465 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 IGSF22Q8N9C0 903 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 THAP9Q9H5L6 903 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 JADE2Q9NQC1 790 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 IFNKQ9P0W0 207 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 MYO5AQ9Y4I1 1855 aaKnown RBP9.29□□□□□ -0.92
USP54-215ENST00000497106 OFD1O75665 1012 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 CCDC172P0C7W6 258 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 CCNE1P24864 410 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 PSMC5P62195 406 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 RPS6P62753 249 aaKnown RBP9.29□□□□□ -0.92
USP54-215ENST00000497106 UBXN2AP68543 259 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 MCM6Q14566 821 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 DPCR1Q3MIW9 517 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 SHCBP1Q8NEM2 672 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 SYTL5Q8TDW5 730 aaPredicted RBP9.29□□□□□ -0.92
USP54-215ENST00000497106 DNAI2Q9GZS0 605 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 MRPL44Q9H9J2 332 aaKnown RBP9.29□□□□□ -0.92
USP54-215ENST00000497106 FRMD4BQ9Y2L6 1034 aa9.29□□□□□ -0.92
USP54-215ENST00000497106 ESPNB1AK53 854 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 ATP2A1O14983 1001 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 CLK2P49760 499 aaKnown RBP9.28□□□□□ -0.92
USP54-215ENST00000497106 DNM2P50570 870 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 HSD17B4P51659 736 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 KMT5BQ4FZB7 885 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 P2RX5Q93086 422 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 MTMR9Q96QG7 549 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 EIF2AK1Q9BQI3 630 aaKnown RBP9.28□□□□□ -0.92
USP54-215ENST00000497106 METTL14Q9HCE5 456 aaKnown RBP9.28□□□□□ -0.92
USP54-215ENST00000497106 SLC45A1Q9Y2W3 748 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 STX10O60499 249 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 YBX3P16989 372 aaKnown RBP eCLIP9.28□□□□□ -0.92
USP54-215ENST00000497106 QARSP47897 775 aaKnown RBP9.28□□□□□ -0.92
USP54-215ENST00000497106 XKR9Q5GH70 373 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 CHADLQ6NUI6 762 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 ZNF746Q6NUN9 644 aaPredicted RBP9.28□□□□□ -0.92
USP54-215ENST00000497106 C11orf57Q6ZUT1 292 aaPredicted RBP9.28□□□□□ -0.92
USP54-215ENST00000497106 RASGRP2Q7LDG7 609 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 CNGA4Q8IV77 575 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 RRAGCQ9HB90 399 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 MEIS2O14770 477 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 STX17P56962 302 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 INHBEP58166 350 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 BICD1Q96G01 975 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 TMEM206Q9H813 350 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 ODF2LQ9ULJ1 636 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 PPME1Q9Y570 386 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 TRAF5O00463 557 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 MATR3P43243 847 aaKnown RBP eCLIP9.28□□□□□ -0.92
USP54-215ENST00000497106 HERVK_113P62684 666 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 TTLL4Q14679 1199 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 EARS2Q5JPH6 523 aaKnown RBP9.28□□□□□ -0.92
USP54-215ENST00000497106 CACNA2D4Q7Z3S7 1137 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 MCPH1Q8NEM0 835 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 SPATC1LQ9H0A9 340 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 PXMP2Q9NR77 195 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 SCAF8Q9UPN6 1271 aaKnown RBP9.28□□□□□ -0.92
USP54-215ENST00000497106 UBE4BO95155 1302 aa9.28□□□□□ -0.92
USP54-215ENST00000497106 MSH4O15457 936 aa9.27□□□□□ -0.92
USP54-215ENST00000497106 SLC37A4O43826 429 aa9.27□□□□□ -0.92
USP54-215ENST00000497106 EIF3JO75822 258 aaKnown RBP9.27□□□□□ -0.92
USP54-215ENST00000497106 RHOBTB3O94955 611 aa9.27□□□□□ -0.92
USP54-215ENST00000497106 HUNKP57058 714 aa9.27□□□□□ -0.92
USP54-215ENST00000497106 NPY5RQ15761 445 aa9.27□□□□□ -0.92
USP54-215ENST00000497106 FAM178BQ8IXR5 827 aa9.27□□□□□ -0.92
USP54-215ENST00000497106 STAMQ92783 540 aa9.27□□□□□ -0.92
USP54-215ENST00000497106 CCDC51Q96ER9 411 aa9.27□□□□□ -0.92
USP54-215ENST00000497106 PARVGQ9HBI0 331 aa9.27□□□□□ -0.92
USP54-215ENST00000497106 KCNMB3Q9NPA1 279 aa9.27□□□□□ -0.92
USP54-215ENST00000497106 CGNQ9P2M7 1197 aaKnown RBP9.27□□□□□ -0.92
USP54-215ENST00000497106 PCDHA10Q9Y5I2 948 aa9.27□□□□□ -0.92
USP54-215ENST00000497106 SNCAIPQ9Y6H5 919 aa9.27□□□□□ -0.92
USP54-215ENST00000497106 M0R2N6 131 aa9.27□□□□□ -0.93
USP54-215ENST00000497106 GCNT3O95395 438 aa9.27□□□□□ -0.93
USP54-215ENST00000497106 ZBTB48P10074 688 aaPredicted RBP9.27□□□□□ -0.93
USP54-215ENST00000497106 STRN3Q13033 797 aa9.27□□□□□ -0.93
USP54-215ENST00000497106 VPS36Q86VN1 386 aa9.27□□□□□ -0.93
USP54-215ENST00000497106 SLC5A5Q92911 643 aa9.27□□□□□ -0.93
USP54-215ENST00000497106 CCDC102AQ96A19 550 aa9.27□□□□□ -0.93
USP54-215ENST00000497106 SCLT1Q96NL6 688 aa9.27□□□□□ -0.93
USP54-215ENST00000497106 ZFYVE28Q9HCC9 887 aa9.27□□□□□ -0.93
USP54-215ENST00000497106 ABT1Q9ULW3 272 aaKnown RBP9.27□□□□□ -0.93
USP54-215ENST00000497106 A0A0G2JLL6 359 aaPredicted RBP9.27□□□□□ -0.93
USP54-215ENST00000497106 MAPK4P31152 587 aa9.27□□□□□ -0.93
USP54-215ENST00000497106 CYP4A11Q02928 519 aa9.27□□□□□ -0.93
USP54-215ENST00000497106 DMP1Q13316 513 aaPredicted RBP9.27□□□□□ -0.93
USP54-215ENST00000497106 CUL4BQ13620 913 aa9.27□□□□□ -0.93
USP54-215ENST00000497106 NT5DC1Q5TFE4 455 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms