RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 FICDQ9BVA6 458 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 EPN3Q9H201 632 aa6.3□□□□□ -1.4
USF3-204ENST00000496826 SPDYE3A6NKU9 549 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 ZBTB39O15060 712 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 INPP5BP32019 993 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 MCM7P33993 719 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 MAPK11Q15759 364 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 BSPRYQ5W0U4 402 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 SDE2Q6IQ49 451 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 CYFIP1Q7L576 1253 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 KBTBD3Q8NAB2 608 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 STN1Q9H668 368 aaKnown RBP6.29□□□□□ -1.4
USF3-204ENST00000496826 EPS8L2Q9H6S3 715 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 FANCFQ9NPI8 374 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 C20orf96Q9NUD7 363 aaPredicted RBP6.29□□□□□ -1.4
USF3-204ENST00000496826 DNAJC28Q9NX36 388 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 MAP3K20Q9NYL2 800 aaKnown RBP6.29□□□□□ -1.4
USF3-204ENST00000496826 ARPP21Q9UBL0 812 aaPredicted RBP6.29□□□□□ -1.4
USF3-204ENST00000496826 NUTM2BA6NNL0 878 aaPredicted RBP6.29□□□□□ -1.4
USF3-204ENST00000496826 NUTM2EB1AL46 878 aaPredicted RBP6.29□□□□□ -1.4
USF3-204ENST00000496826 CREB3O43889 395 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 NFKB1P19838 968 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 HNRNPMP52272 730 aaKnown RBP eCLIP6.29□□□□□ -1.4
USF3-204ENST00000496826 KLC1Q07866 573 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 ILF3Q12906 894 aaKnown RBP eCLIP6.29□□□□□ -1.4
USF3-204ENST00000496826 CCDC157Q569K6 752 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 IZUMO3Q5VZ72 239 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 FAM13CQ8NE31 585 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 MTA3Q9BTC8 594 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 TRIM54Q9BYV2 358 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 GINM1Q9NU53 330 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 KCNH3Q9ULD8 1083 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 ZBBXA8MT70 800 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 CAPN2P17655 700 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 MARCKSP29966 332 aaPredicted RBP6.29□□□□□ -1.4
USF3-204ENST00000496826 ARL4DP49703 201 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 FOXD4L6Q3SYB3 417 aaPredicted RBP6.29□□□□□ -1.4
USF3-204ENST00000496826 KRT79Q5XKE5 535 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 CCDC137Q6PK04 289 aaKnown RBP6.29□□□□□ -1.4
USF3-204ENST00000496826 FOXD4L3Q6VB84 417 aaPredicted RBP6.29□□□□□ -1.4
USF3-204ENST00000496826 ZBTB33Q86T24 672 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 TERB1Q8NA31 727 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 DENND6BQ8NEG7 585 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 NUDCD1Q96RS6 583 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 GID8Q9NWU2 228 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 CTNNAL1Q9UBT7 734 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 EPB41P11171 864 aaKnown RBP6.29□□□□□ -1.4
USF3-204ENST00000496826 MAP2K2P36507 400 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 CAMK1Q14012 370 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 RTN1Q16799 776 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 CASC4Q6P4E1 433 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 HMG20AQ9NP66 347 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 HERC5Q9UII4 1024 aaKnown RBP6.29□□□□□ -1.4
USF3-204ENST00000496826 TDP2O95551 362 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 RPN1P04843 607 aaKnown RBP6.29□□□□□ -1.4
USF3-204ENST00000496826 STX5Q13190 355 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 C10orf76Q5T2E6 689 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 ANKRD44Q8N8A2 993 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.29□□□□□ -1.4
USF3-204ENST00000496826 SCFD1Q8WVM8 642 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 OLFM3Q96PB7 478 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 ING2Q9H160 280 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 RNF123Q5XPI4 1314 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 BCRP11274 1271 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 NNMTP40261 264 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 ECE1P42892 770 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 HSPA2P54652 639 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 TRAF3Q13114 568 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 EAPPQ56P03 285 aaPredicted RBP6.29□□□□□ -1.4
USF3-204ENST00000496826 TMC5Q6UXY8 1006 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 TRIM36Q9NQ86 728 aa6.29□□□□□ -1.4
USF3-204ENST00000496826 CENPXA8MT69 81 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 TIPRLO75663 272 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 BMP10O95393 424 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 ZKSCAN8Q15776 578 aaPredicted RBP6.28□□□□□ -1.4
USF3-204ENST00000496826 HADHQ16836 314 aaKnown RBP6.28□□□□□ -1.4
USF3-204ENST00000496826 CCDC54Q8NEL0 328 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 MAGEB5Q9BZ81 275 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 C6orf203Q9P0P8 240 aaPredicted RBP6.28□□□□□ -1.4
USF3-204ENST00000496826 RSPH14Q9UHP6 348 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 SH3GLB1Q9Y371 365 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 ZNF711Q9Y462 761 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 GSAPA4D1B5 854 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 F13A1P00488 732 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 TAC1P20366 129 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 TRAPPC10P48553 1259 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 LLGL1Q15334 1064 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 ANKS6Q68DC2 871 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 GRHL2Q6ISB3 625 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 PMF1Q6P1K2 205 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 TBC1D9Q6ZT07 1266 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 TMTC3Q6ZXV5 915 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 LLPHQ9BRT6 129 aaKnown RBP6.28□□□□□ -1.4
USF3-204ENST00000496826 OSBPL8Q9BZF1 889 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 EURLQ9NYK6 297 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 ARMCX3Q9UH62 379 aaPredicted RBP6.28□□□□□ -1.4
USF3-204ENST00000496826 PCDHGB4Q9UN71 923 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 STK38LQ9Y2H1 464 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 PRR29P0C7W0 189 aa6.28□□□□□ -1.4
USF3-204ENST00000496826 ATP8B4Q8TF62 1192 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms