RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 CALM1P0DP23 149 aa13.35□□□□□ -0.27
COL6A3-213ENST00000493475 CALM2P0DP24 149 aa13.35□□□□□ -0.27
COL6A3-213ENST00000493475 CALM3P0DP25 149 aa13.35□□□□□ -0.27
COL6A3-213ENST00000493475 PTPROQ16827 1216 aa13.35□□□□□ -0.27
COL6A3-213ENST00000493475 HSDL1Q3SXM5 330 aa13.35□□□□□ -0.27
COL6A3-213ENST00000493475 METTL7BQ6UX53 244 aa13.35□□□□□ -0.27
COL6A3-213ENST00000493475 NFXL1Q6ZNB6 911 aa13.35□□□□□ -0.27
COL6A3-213ENST00000493475 SEPT8Q92599 483 aa13.35□□□□□ -0.27
COL6A3-213ENST00000493475 SAMD11Q96NU1 681 aa13.35□□□□□ -0.27
COL6A3-213ENST00000493475 MTA3Q9BTC8 594 aa13.35□□□□□ -0.27
COL6A3-213ENST00000493475 EHMT1Q9H9B1 1298 aa13.35□□□□□ -0.27
COL6A3-213ENST00000493475 CCDC69A6NI79 296 aa13.34□□□□□ -0.27
COL6A3-213ENST00000493475 E7EWF7 191 aa13.34□□□□□ -0.27
COL6A3-213ENST00000493475 RPLP2P05387 115 aaKnown RBP13.34□□□□□ -0.27
COL6A3-213ENST00000493475 CHMLP26374 656 aa13.34□□□□□ -0.27
COL6A3-213ENST00000493475 SMARCA1P28370 1054 aa13.34□□□□□ -0.27
COL6A3-213ENST00000493475 ZNF618Q5T7W0 954 aa13.34□□□□□ -0.27
COL6A3-213ENST00000493475 RSPH3Q86UC2 560 aa13.34□□□□□ -0.27
COL6A3-213ENST00000493475 SERINC5Q86VE9 423 aa13.34□□□□□ -0.27
COL6A3-213ENST00000493475 APBB2Q92870 758 aa13.34□□□□□ -0.27
COL6A3-213ENST00000493475 VWCEQ96DN2 955 aa13.34□□□□□ -0.27
COL6A3-213ENST00000493475 BDP1A6H8Y1 2624 aa13.34□□□□□ -0.27
COL6A3-213ENST00000493475 OPLAHO14841 1288 aa13.33□□□□□ -0.28
COL6A3-213ENST00000493475 PPP1R11O60927 126 aaPredicted RBP13.33□□□□□ -0.28
COL6A3-213ENST00000493475 NBNO60934 754 aa13.33□□□□□ -0.28
COL6A3-213ENST00000493475 LGALS2P05162 132 aa13.33□□□□□ -0.28
COL6A3-213ENST00000493475 ICAM3P32942 547 aa13.33□□□□□ -0.28
COL6A3-213ENST00000493475 MCM5P33992 734 aa13.33□□□□□ -0.28
COL6A3-213ENST00000493475 TIE1P35590 1138 aa13.33□□□□□ -0.28
COL6A3-213ENST00000493475 TROAPQ12815 778 aa13.33□□□□□ -0.28
COL6A3-213ENST00000493475 GRB10Q13322 594 aa13.33□□□□□ -0.28
COL6A3-213ENST00000493475 SYNE3Q6ZMZ3 975 aa13.33□□□□□ -0.28
COL6A3-213ENST00000493475 RASEFQ8IZ41 740 aa13.33□□□□□ -0.28
COL6A3-213ENST00000493475 MYOCDQ8IZQ8 938 aa13.33□□□□□ -0.28
COL6A3-213ENST00000493475 DHX38Q92620 1227 aaKnown RBP13.33□□□□□ -0.28
COL6A3-213ENST00000493475 INPP4AQ96PE3 977 aaPredicted RBP13.33□□□□□ -0.28
COL6A3-213ENST00000493475 YME1L1Q96TA2 773 aa13.33□□□□□ -0.28
COL6A3-213ENST00000493475 SENP7Q9BQF6 1050 aa13.33□□□□□ -0.28
COL6A3-213ENST00000493475 SPZ1Q9BXG8 430 aa13.33□□□□□ -0.28
COL6A3-213ENST00000493475 MYH6P13533 1939 aa13.33□□□□□ -0.28
COL6A3-213ENST00000493475 NCOR1O75376 2440 aa13.32□□□□□ -0.28
COL6A3-213ENST00000493475 GBF1Q92538 1859 aa13.32□□□□□ -0.28
COL6A3-213ENST00000493475 SPDYE3A6NKU9 549 aa13.32□□□□□ -0.28
COL6A3-213ENST00000493475 RFXAPO00287 272 aa13.32□□□□□ -0.28
COL6A3-213ENST00000493475 SGSM2O43147 1006 aa13.32□□□□□ -0.28
COL6A3-213ENST00000493475 SORBS3O60504 671 aa13.32□□□□□ -0.28
COL6A3-213ENST00000493475 SMIM10L2AP0DMW4 78 aa13.32□□□□□ -0.28
COL6A3-213ENST00000493475 SMIM10L2BP0DMW5 78 aa13.32□□□□□ -0.28
COL6A3-213ENST00000493475 GSPT1P15170 499 aaKnown RBP13.32□□□□□ -0.28
COL6A3-213ENST00000493475 ERVK-21P61565 698 aa13.32□□□□□ -0.28
COL6A3-213ENST00000493475 DEFB103AP81534 67 aa13.32□□□□□ -0.28
COL6A3-213ENST00000493475 PCNX4Q63HM2 1172 aa13.32□□□□□ -0.28
COL6A3-213ENST00000493475 ZNF654Q8IZM8 581 aa13.32□□□□□ -0.28
COL6A3-213ENST00000493475 FBXO22Q8NEZ5 403 aa13.32□□□□□ -0.28
COL6A3-213ENST00000493475 TMEM87BQ96K49 555 aa13.32□□□□□ -0.28
COL6A3-213ENST00000493475 C16orf70Q9BSU1 422 aa13.32□□□□□ -0.28
COL6A3-213ENST00000493475 MTUS1Q9ULD2 1270 aa13.32□□□□□ -0.28
COL6A3-213ENST00000493475 FAM50BQ9Y247 325 aa13.32□□□□□ -0.28
COL6A3-213ENST00000493475 KIAA1217Q5T5P2 1943 aa13.32□□□□□ -0.28
COL6A3-213ENST00000493475 NRCAMQ92823 1304 aa13.32□□□□□ -0.28
COL6A3-213ENST00000493475 SPATA31C2B4DYI2 1134 aa13.31□□□□□ -0.28
COL6A3-213ENST00000493475 PIK3CDO00329 1044 aa13.31□□□□□ -0.28
COL6A3-213ENST00000493475 RGS20O76081 388 aa13.31□□□□□ -0.28
COL6A3-213ENST00000493475 BMP1P13497 986 aa13.31□□□□□ -0.28
COL6A3-213ENST00000493475 COL9A1P20849 921 aa13.31□□□□□ -0.28
COL6A3-213ENST00000493475 TFF2Q03403 129 aa13.31□□□□□ -0.28
COL6A3-213ENST00000493475 TIGD5Q53EQ6 642 aa13.31□□□□□ -0.28
COL6A3-213ENST00000493475 RNF20Q5VTR2 975 aa13.31□□□□□ -0.28
COL6A3-213ENST00000493475 FAM117BQ6P1L5 589 aa13.31□□□□□ -0.28
COL6A3-213ENST00000493475 TAF2Q6P1X5 1199 aa13.31□□□□□ -0.28
COL6A3-213ENST00000493475 CYFIP1Q7L576 1253 aa13.31□□□□□ -0.28
COL6A3-213ENST00000493475 TEX2Q8IWB9 1127 aa13.31□□□□□ -0.28
COL6A3-213ENST00000493475 DBF4BQ8NFT6 615 aa13.31□□□□□ -0.28
COL6A3-213ENST00000493475 PIBF1Q8WXW3 757 aa13.31□□□□□ -0.28
COL6A3-213ENST00000493475 CTAGE1Q96RT6 745 aa13.31□□□□□ -0.28
COL6A3-213ENST00000493475 PSTPIP2Q9H939 334 aa13.31□□□□□ -0.28
COL6A3-213ENST00000493475 RWDD3Q9Y3V2 267 aa13.31□□□□□ -0.28
COL6A3-213ENST00000493475 SLC12A7Q9Y666 1083 aa13.31□□□□□ -0.28
COL6A3-213ENST00000493475 FRMPD4Q14CM0 1322 aa13.31□□□□□ -0.28
COL6A3-213ENST00000493475 CHD7Q9P2D1 2997 aa13.31□□□□□ -0.28
COL6A3-213ENST00000493475 TRANK1O15050 2925 aa13.3□□□□□ -0.28
COL6A3-213ENST00000493475 LINC01553A4QN01 128 aa13.3□□□□□ -0.28
COL6A3-213ENST00000493475 MAFGO15525 162 aa13.3□□□□□ -0.28
COL6A3-213ENST00000493475 PRC1O43663 620 aa13.3□□□□□ -0.28
COL6A3-213ENST00000493475 ARHGAP4P98171 946 aa13.3□□□□□ -0.28
COL6A3-213ENST00000493475 SP2Q02086 613 aa13.3□□□□□ -0.28
COL6A3-213ENST00000493475 PTH1RQ03431 593 aa13.3□□□□□ -0.28
COL6A3-213ENST00000493475 TRIM71Q2Q1W2 868 aaKnown RBP13.3□□□□□ -0.28
COL6A3-213ENST00000493475 PUS10Q3MIT2 529 aaKnown RBP13.3□□□□□ -0.28
COL6A3-213ENST00000493475 PLEKHG4Q58EX7 1191 aa13.3□□□□□ -0.28
COL6A3-213ENST00000493475 UTP14CQ5TAP6 766 aaKnown RBP13.3□□□□□ -0.28
COL6A3-213ENST00000493475 IL31RAQ8NI17 732 aa13.3□□□□□ -0.28
COL6A3-213ENST00000493475 GDPD5Q8WTR4 605 aa13.3□□□□□ -0.28
COL6A3-213ENST00000493475 MAP4K1Q92918 833 aa13.3□□□□□ -0.28
COL6A3-213ENST00000493475 GPRASP2Q96D09 838 aa13.3□□□□□ -0.28
COL6A3-213ENST00000493475 GPR20Q99678 358 aa13.3□□□□□ -0.28
COL6A3-213ENST00000493475 RTEL1Q9NZ71 1219 aa13.3□□□□□ -0.28
COL6A3-213ENST00000493475 SUPT16HQ9Y5B9 1047 aaKnown RBP13.3□□□□□ -0.28
COL6A3-213ENST00000493475 RBM8AQ9Y5S9 174 aaKnown RBP13.3□□□□□ -0.28
COL6A3-213ENST00000493475 MUC3AQ02505 3323 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms