RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 TMEFF2Q9UIK5 374 aaPredicted RBP5.93□□□□□ -1.46
SMC4-220ENST00000488017 WASF3Q9UPY6 502 aa5.93□□□□□ -1.46
SMC4-220ENST00000488017 ARNTLO00327 626 aa5.92□□□□□ -1.46
SMC4-220ENST00000488017 MAFKO60675 156 aa5.92□□□□□ -1.46
SMC4-220ENST00000488017 KLHL18O94889 574 aa5.92□□□□□ -1.46
SMC4-220ENST00000488017 SCG5P05408 212 aa5.92□□□□□ -1.46
SMC4-220ENST00000488017 LSAMPQ13449 338 aa5.92□□□□□ -1.46
SMC4-220ENST00000488017 NCAPHQ15003 741 aa5.92□□□□□ -1.46
SMC4-220ENST00000488017 CYP4F22Q6NT55 531 aa5.92□□□□□ -1.46
SMC4-220ENST00000488017 TCTN3Q6NUS6 607 aa5.92□□□□□ -1.46
SMC4-220ENST00000488017 TMC5Q6UXY8 1006 aa5.92□□□□□ -1.46
SMC4-220ENST00000488017 Q6ZUG5 572 aa5.92□□□□□ -1.46
SMC4-220ENST00000488017 RCBTB1Q8NDN9 531 aa5.92□□□□□ -1.46
SMC4-220ENST00000488017 NUDT10Q8NFP7 164 aa5.92□□□□□ -1.46
SMC4-220ENST00000488017 EDAQ92838 391 aa5.92□□□□□ -1.46
SMC4-220ENST00000488017 NUDT11Q96G61 164 aa5.92□□□□□ -1.46
SMC4-220ENST00000488017 SMOC1Q9H4F8 434 aa5.92□□□□□ -1.46
SMC4-220ENST00000488017 MYOTQ9UBF9 498 aa5.92□□□□□ -1.46
SMC4-220ENST00000488017 FOXS1O43638 330 aa5.91□□□□□ -1.46
SMC4-220ENST00000488017 DGKIO75912 1065 aa5.91□□□□□ -1.46
SMC4-220ENST00000488017 CPP00450 1065 aa5.91□□□□□ -1.46
SMC4-220ENST00000488017 LTBRP36941 435 aa5.91□□□□□ -1.46
SMC4-220ENST00000488017 TTLL11Q8NHH1 800 aa5.91□□□□□ -1.46
SMC4-220ENST00000488017 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.91□□□□□ -1.46
SMC4-220ENST00000488017 GPRASP2Q96D09 838 aa5.91□□□□□ -1.46
SMC4-220ENST00000488017 NAF1Q96HR8 494 aaKnown RBP5.91□□□□□ -1.46
SMC4-220ENST00000488017 AJUBAQ96IF1 538 aa5.91□□□□□ -1.46
SMC4-220ENST00000488017 CCDC140Q96MF4 163 aa5.91□□□□□ -1.46
SMC4-220ENST00000488017 LMF1Q96S06 567 aa5.91□□□□□ -1.46
SMC4-220ENST00000488017 GZF1Q9H116 711 aaPredicted RBP5.91□□□□□ -1.46
SMC4-220ENST00000488017 EPB41L1Q9H4G0 881 aa5.91□□□□□ -1.46
SMC4-220ENST00000488017 DLL4Q9NR61 685 aa5.91□□□□□ -1.46
SMC4-220ENST00000488017 FBXL7Q9UJT9 491 aa5.91□□□□□ -1.46
SMC4-220ENST00000488017 ZNF16P17020 682 aaPredicted RBP5.9□□□□□ -1.46
SMC4-220ENST00000488017 SMAD2Q15796 467 aaKnown RBP5.9□□□□□ -1.46
SMC4-220ENST00000488017 TRIM48Q8IWZ4 208 aa5.9□□□□□ -1.46
SMC4-220ENST00000488017 IFNL2Q8IZJ0 200 aa5.9□□□□□ -1.46
SMC4-220ENST00000488017 DTX3Q8N9I9 347 aa5.9□□□□□ -1.46
SMC4-220ENST00000488017 KREMEN2Q8NCW0 462 aa5.9□□□□□ -1.46
SMC4-220ENST00000488017 BTN2A2Q8WVV5 523 aa5.9□□□□□ -1.46
SMC4-220ENST00000488017 PPP1R14AQ96A00 147 aa5.9□□□□□ -1.46
SMC4-220ENST00000488017 GNRHR2Q96P88 292 aa5.9□□□□□ -1.46
SMC4-220ENST00000488017 ADOQ96SZ5 270 aa5.9□□□□□ -1.46
SMC4-220ENST00000488017 ZFR2Q9UPR6 939 aaKnown RBP5.9□□□□□ -1.46
SMC4-220ENST00000488017 SNRPB2P08579 225 aaKnown RBP5.89□□□□□ -1.47
SMC4-220ENST00000488017 DPTQ07507 201 aa5.89□□□□□ -1.47
SMC4-220ENST00000488017 NRN1LQ496H8 165 aa5.89□□□□□ -1.47
SMC4-220ENST00000488017 VASNQ6EMK4 673 aa5.89□□□□□ -1.47
SMC4-220ENST00000488017 PROSER1Q86XN7 944 aa5.89□□□□□ -1.47
SMC4-220ENST00000488017 REXO1L1PQ8IX06 675 aa5.89□□□□□ -1.47
SMC4-220ENST00000488017 CEP89Q96ST8 783 aa5.89□□□□□ -1.47
SMC4-220ENST00000488017 CLDND1Q9NY35 253 aa5.89□□□□□ -1.47
SMC4-220ENST00000488017 ASH2LQ9UBL3 628 aa5.89□□□□□ -1.47
SMC4-220ENST00000488017 ZNF202O95125 648 aa5.88□□□□□ -1.47
SMC4-220ENST00000488017 KNG1P01042 644 aa5.88□□□□□ -1.47
SMC4-220ENST00000488017 CSF2RBP32927 897 aa5.88□□□□□ -1.47
SMC4-220ENST00000488017 MCM7P33993 719 aa5.88□□□□□ -1.47
SMC4-220ENST00000488017 ECI1P42126 302 aa5.88□□□□□ -1.47
SMC4-220ENST00000488017 NANOS3P60323 173 aaKnown RBP5.88□□□□□ -1.47
SMC4-220ENST00000488017 GIMAP8Q8ND71 665 aaPredicted RBP5.88□□□□□ -1.47
SMC4-220ENST00000488017 CPLX3Q8WVH0 158 aa5.88□□□□□ -1.47
SMC4-220ENST00000488017 CHAMP1Q96JM3 812 aa5.88□□□□□ -1.47
SMC4-220ENST00000488017 PCDHA2Q9Y5H9 948 aa5.88□□□□□ -1.47
SMC4-220ENST00000488017 KRIT1O00522 736 aa5.87□□□□□ -1.47
SMC4-220ENST00000488017 NARSO43776 548 aaKnown RBP5.87□□□□□ -1.47
SMC4-220ENST00000488017 COMTP21964 271 aa5.87□□□□□ -1.47
SMC4-220ENST00000488017 PTH1RQ03431 593 aa5.87□□□□□ -1.47
SMC4-220ENST00000488017 USP39Q53GS9 565 aaKnown RBP5.87□□□□□ -1.47
SMC4-220ENST00000488017 PPIL6Q8IXY8 311 aa5.87□□□□□ -1.47
SMC4-220ENST00000488017 LGR4Q9BXB1 951 aa5.87□□□□□ -1.47
SMC4-220ENST00000488017 KATNBL1Q9H079 304 aa5.87□□□□□ -1.47
SMC4-220ENST00000488017 CSRNP2Q9H175 543 aa5.87□□□□□ -1.47
SMC4-220ENST00000488017 PCSK5Q92824 1860 aa5.86□□□□□ -1.47
SMC4-220ENST00000488017 GJA8P48165 433 aa5.86□□□□□ -1.47
SMC4-220ENST00000488017 NASPP49321 788 aaPredicted RBP5.86□□□□□ -1.47
SMC4-220ENST00000488017 ATXN1P54253 815 aaKnown RBP5.86□□□□□ -1.47
SMC4-220ENST00000488017 AGBL4Q5VU57 503 aa5.86□□□□□ -1.47
SMC4-220ENST00000488017 TAX1BP1Q86VP1 789 aa5.86□□□□□ -1.47
SMC4-220ENST00000488017 NEIL1Q96FI4 390 aaPredicted RBP5.86□□□□□ -1.47
SMC4-220ENST00000488017 LRRC37BQ96QE4 947 aa5.86□□□□□ -1.47
SMC4-220ENST00000488017 TRIM8Q9BZR9 551 aa5.86□□□□□ -1.47
SMC4-220ENST00000488017 IKZF4Q9H2S9 585 aa5.86□□□□□ -1.47
SMC4-220ENST00000488017 SLC6A20Q9NP91 592 aa5.86□□□□□ -1.47
SMC4-220ENST00000488017 RBPJLQ9UBG7 517 aa5.86□□□□□ -1.47
SMC4-220ENST00000488017 TBX1O43435 398 aa5.85□□□□□ -1.47
SMC4-220ENST00000488017 FBXO21O94952 628 aa5.85□□□□□ -1.47
SMC4-220ENST00000488017 ITGAVP06756 1048 aa5.85□□□□□ -1.47
SMC4-220ENST00000488017 LCP1P13796 627 aa5.85□□□□□ -1.47
SMC4-220ENST00000488017 LSM12Q3MHD2 195 aaKnown RBP5.85□□□□□ -1.47
SMC4-220ENST00000488017 IGFL4Q6B9Z1 124 aa5.85□□□□□ -1.47
SMC4-220ENST00000488017 ZNF227Q86WZ6 799 aa5.85□□□□□ -1.47
SMC4-220ENST00000488017 FAM169BQ8N8A8 192 aa5.85□□□□□ -1.47
SMC4-220ENST00000488017 SEC16BQ96JE7 1060 aa5.85□□□□□ -1.47
SMC4-220ENST00000488017 PDGFDQ9GZP0 370 aaPredicted RBP5.85□□□□□ -1.47
SMC4-220ENST00000488017 KCND1Q9NSA2 647 aa5.85□□□□□ -1.47
SMC4-220ENST00000488017 STRIP2Q9ULQ0 834 aa5.85□□□□□ -1.47
SMC4-220ENST00000488017 NPFFR2Q9Y5X5 522 aa5.85□□□□□ -1.47
SMC4-220ENST00000488017 SCAMP3O14828 347 aaKnown RBP5.84□□□□□ -1.47
SMC4-220ENST00000488017 RAD17O75943 681 aa5.84□□□□□ -1.47
SMC4-220ENST00000488017 KCNJ6P48051 423 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms