RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 SH3RF1Q7Z6J0 888 aa16.82■□□□□ 0.28
USP4-212ENST00000486549 SH2B1Q9NRF2 756 aaPredicted RBP16.82■□□□□ 0.28
USP4-212ENST00000486549 KCNH7Q9NS40 1196 aa16.82■□□□□ 0.28
USP4-212ENST00000486549 LTBP2Q14767 1821 aa16.82■□□□□ 0.28
USP4-212ENST00000486549 ARP10275 920 aa16.81■□□□□ 0.28
USP4-212ENST00000486549 KCNA2P16389 499 aa16.81■□□□□ 0.28
USP4-212ENST00000486549 CDK7P50613 346 aa16.81■□□□□ 0.28
USP4-212ENST00000486549 NPY5RQ15761 445 aa16.81■□□□□ 0.28
USP4-212ENST00000486549 NBPF20Q3BBV1 942 aa16.81■□□□□ 0.28
USP4-212ENST00000486549 GALNT17Q6IS24 598 aa16.81■□□□□ 0.28
USP4-212ENST00000486549 METTL7BQ6UX53 244 aa16.81■□□□□ 0.28
USP4-212ENST00000486549 ANKRD33Q7Z3H0 272 aa16.81■□□□□ 0.28
USP4-212ENST00000486549 DAGLBQ8NCG7 672 aa16.81■□□□□ 0.28
USP4-212ENST00000486549 TOX2Q96NM4 488 aa16.81■□□□□ 0.28
USP4-212ENST00000486549 UIMC1Q96RL1 719 aa16.81■□□□□ 0.28
USP4-212ENST00000486549 SENP7Q9BQF6 1050 aa16.81■□□□□ 0.28
USP4-212ENST00000486549 PHF20Q9BVI0 1012 aa16.81■□□□□ 0.28
USP4-212ENST00000486549 SEZ6LQ9BYH1 1024 aa16.81■□□□□ 0.28
USP4-212ENST00000486549 TMEM39AQ9NV64 488 aa16.81■□□□□ 0.28
USP4-212ENST00000486549 TELO2Q9Y4R8 837 aa16.81■□□□□ 0.28
USP4-212ENST00000486549 FAM86B1E9PN63 330 aa16.8■□□□□ 0.28
USP4-212ENST00000486549 TLR3O15455 904 aaKnown RBP16.8■□□□□ 0.28
USP4-212ENST00000486549 CD2BP2O95400 341 aaKnown RBP16.8■□□□□ 0.28
USP4-212ENST00000486549 CYP3A4P08684 503 aa16.8■□□□□ 0.28
USP4-212ENST00000486549 FAM86B2P0C5J1 330 aa16.8■□□□□ 0.28
USP4-212ENST00000486549 MDM2Q00987 491 aaPredicted RBP16.8■□□□□ 0.28
USP4-212ENST00000486549 FAAP100Q0VG06 881 aa16.8■□□□□ 0.28
USP4-212ENST00000486549 PLA2G4DQ86XP0 818 aa16.8■□□□□ 0.28
USP4-212ENST00000486549 FAM126BQ8IXS8 530 aa16.8■□□□□ 0.28
USP4-212ENST00000486549 FAM177A1Q8N128 213 aaPredicted RBP16.8■□□□□ 0.28
USP4-212ENST00000486549 SLC43A3Q8NBI5 491 aa16.8■□□□□ 0.28
USP4-212ENST00000486549 GIMAP8Q8ND71 665 aaPredicted RBP16.8■□□□□ 0.28
USP4-212ENST00000486549 CRYGNQ8WXF5 182 aa16.8■□□□□ 0.28
USP4-212ENST00000486549 RANBP2P49792 3224 aaKnown RBP16.79■□□□□ 0.28
USP4-212ENST00000486549 TRIM43BA6NCK2 446 aa16.79■□□□□ 0.28
USP4-212ENST00000486549 M0R2N6 131 aa16.79■□□□□ 0.28
USP4-212ENST00000486549 MEIS1O00470 390 aa16.79■□□□□ 0.28
USP4-212ENST00000486549 MAFGO15525 162 aa16.79■□□□□ 0.28
USP4-212ENST00000486549 PSEN2P49810 448 aa16.79■□□□□ 0.28
USP4-212ENST00000486549 TRIM29Q14134 588 aa16.79■□□□□ 0.28
USP4-212ENST00000486549 UTP14CQ5TAP6 766 aaKnown RBP16.79■□□□□ 0.28
USP4-212ENST00000486549 KRT25Q7Z3Z0 450 aa16.79■□□□□ 0.28
USP4-212ENST00000486549 OXER1Q8TDS5 423 aa16.79■□□□□ 0.28
USP4-212ENST00000486549 TBCKQ8TEA7 893 aa16.79■□□□□ 0.28
USP4-212ENST00000486549 KAT2BQ92831 832 aa16.79■□□□□ 0.28
USP4-212ENST00000486549 TRIM43Q96BQ3 446 aaPredicted RBP16.79■□□□□ 0.28
USP4-212ENST00000486549 GPR20Q99678 358 aa16.79■□□□□ 0.28
USP4-212ENST00000486549 SDF4Q9BRK5 362 aa16.79■□□□□ 0.28
USP4-212ENST00000486549 LLPHQ9BRT6 129 aaKnown RBP16.79■□□□□ 0.28
USP4-212ENST00000486549 TRPV6Q9H1D0 765 aa16.79■□□□□ 0.28
USP4-212ENST00000486549 AGO4Q9HCK5 861 aaKnown RBP16.79■□□□□ 0.28
USP4-212ENST00000486549 IGLV3-22A0A075B6J6 115 aa16.78■□□□□ 0.28
USP4-212ENST00000486549 CCDC194A0A1B0GVG4 234 aa16.78■□□□□ 0.28
USP4-212ENST00000486549 DDX39AO00148 427 aaKnown RBP16.78■□□□□ 0.28
USP4-212ENST00000486549 B4GALT4O60513 344 aa16.78■□□□□ 0.28
USP4-212ENST00000486549 PPFIA4O75335 1185 aa16.78■□□□□ 0.28
USP4-212ENST00000486549 F2P00734 622 aa16.78■□□□□ 0.28
USP4-212ENST00000486549 LGALS2P05162 132 aa16.78■□□□□ 0.28
USP4-212ENST00000486549 HOXD8P13378 290 aaPredicted RBP16.78■□□□□ 0.28
USP4-212ENST00000486549 MFSD10Q14728 455 aa16.78■□□□□ 0.28
USP4-212ENST00000486549 NONOQ15233 471 aaKnown RBP eCLIP16.78■□□□□ 0.28
USP4-212ENST00000486549 PRR16Q569H4 304 aa16.78■□□□□ 0.28
USP4-212ENST00000486549 NIPA1Q7RTP0 329 aa16.78■□□□□ 0.28
USP4-212ENST00000486549 KATNAL1Q9BW62 490 aa16.78■□□□□ 0.28
USP4-212ENST00000486549 BRMS1Q9HCU9 246 aa16.78■□□□□ 0.28
USP4-212ENST00000486549 JPH1Q9HDC5 661 aaPredicted RBP16.78■□□□□ 0.28
USP4-212ENST00000486549 TRMT13Q9NUP7 481 aaKnown RBP16.78■□□□□ 0.28
USP4-212ENST00000486549 RAG1P15918 1043 aa16.77■□□□□ 0.28
USP4-212ENST00000486549 KRT2P35908 639 aa16.77■□□□□ 0.28
USP4-212ENST00000486549 SETQ01105 290 aaPredicted RBP16.77■□□□□ 0.28
USP4-212ENST00000486549 GUCY1B3Q02153 619 aa16.77■□□□□ 0.28
USP4-212ENST00000486549 ITGB3BPQ13352 177 aaPredicted RBP16.77■□□□□ 0.28
USP4-212ENST00000486549 INF2Q27J81 1249 aa16.77■□□□□ 0.28
USP4-212ENST00000486549 KIAA0753Q2KHM9 967 aa16.77■□□□□ 0.28
USP4-212ENST00000486549 KRT40Q6A162 431 aa16.77■□□□□ 0.28
USP4-212ENST00000486549 NFRKBQ6P4R8 1299 aa16.77■□□□□ 0.28
USP4-212ENST00000486549 TRIM50Q86XT4 487 aa16.77■□□□□ 0.28
USP4-212ENST00000486549 FAM184AQ8NB25 1140 aa16.77■□□□□ 0.28
USP4-212ENST00000486549 TMX3Q96JJ7 454 aa16.77■□□□□ 0.28
USP4-212ENST00000486549 ZNF577Q9BSK1 485 aa16.77■□□□□ 0.28
USP4-212ENST00000486549 PPP1R12CQ9BZL4 782 aa16.77■□□□□ 0.28
USP4-212ENST00000486549 SLC9A2Q9UBY0 812 aa16.77■□□□□ 0.28
USP4-212ENST00000486549 KIAA0355O15063 1070 aa16.76■□□□□ 0.27
USP4-212ENST00000486549 CD4P01730 458 aa16.76■□□□□ 0.27
USP4-212ENST00000486549 ITGB8P26012 769 aa16.76■□□□□ 0.27
USP4-212ENST00000486549 CIITAP33076 1130 aa16.76■□□□□ 0.27
USP4-212ENST00000486549 TCF7P36402 384 aaPredicted RBP16.76■□□□□ 0.27
USP4-212ENST00000486549 HMGN5P82970 282 aaKnown RBP16.76■□□□□ 0.27
USP4-212ENST00000486549 NR5A1Q13285 461 aa16.76■□□□□ 0.27
USP4-212ENST00000486549 PIK3AP1Q6ZUJ8 805 aa16.76■□□□□ 0.27
USP4-212ENST00000486549 C7orf31Q8N865 590 aa16.76■□□□□ 0.27
USP4-212ENST00000486549 IL27Q8NEV9 243 aa16.76■□□□□ 0.27
USP4-212ENST00000486549 BADQ92934 168 aa16.76■□□□□ 0.27
USP4-212ENST00000486549 C16orf70Q9BSU1 422 aa16.76■□□□□ 0.27
USP4-212ENST00000486549 TBX21Q9UL17 535 aa16.76■□□□□ 0.27
USP4-212ENST00000486549 NOD1Q9Y239 953 aa16.76■□□□□ 0.27
USP4-212ENST00000486549 NFASCO94856 1347 aa16.75■□□□□ 0.27
USP4-212ENST00000486549 GSTTP1A0A1W2PQM5 241 aa16.75■□□□□ 0.27
USP4-212ENST00000486549 H3BRB1 525 aa16.75■□□□□ 0.27
USP4-212ENST00000486549 HAS3O00219 553 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms