RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 UBA1P22314 1058 aaKnown RBP13.82□□□□□ -0.2
SDC1-206ENST00000482879 PRPHP41219 470 aa13.82□□□□□ -0.2
SDC1-206ENST00000482879 ITGB3BPQ13352 177 aaPredicted RBP13.82□□□□□ -0.2
SDC1-206ENST00000482879 SLC9C1Q4G0N8 1177 aa13.82□□□□□ -0.2
SDC1-206ENST00000482879 DUSP28Q4G0W2 176 aa13.82□□□□□ -0.2
SDC1-206ENST00000482879 TMEM63BQ5T3F8 832 aa13.82□□□□□ -0.2
SDC1-206ENST00000482879 MAP3K21Q5TCX8 1036 aa13.82□□□□□ -0.2
SDC1-206ENST00000482879 ARL6IP4Q66PJ3 421 aaKnown RBP13.82□□□□□ -0.2
SDC1-206ENST00000482879 DTHD1Q6ZMT9 781 aa13.82□□□□□ -0.2
SDC1-206ENST00000482879 GIMAP8Q8ND71 665 aaPredicted RBP13.82□□□□□ -0.2
SDC1-206ENST00000482879 KCNG4Q8TDN1 519 aa13.82□□□□□ -0.2
SDC1-206ENST00000482879 COPS5Q92905 334 aa13.82□□□□□ -0.2
SDC1-206ENST00000482879 RIT2Q99578 217 aa13.82□□□□□ -0.2
SDC1-206ENST00000482879 TEKT3Q9BXF9 490 aa13.82□□□□□ -0.2
SDC1-206ENST00000482879 BCAS3Q9H6U6 928 aa13.82□□□□□ -0.2
SDC1-206ENST00000482879 TTC12Q9H892 705 aaPredicted RBP13.82□□□□□ -0.2
SDC1-206ENST00000482879 GDPD2Q9HCC8 539 aa13.82□□□□□ -0.2
SDC1-206ENST00000482879 PCDHA12Q9UN75 941 aa13.82□□□□□ -0.2
SDC1-206ENST00000482879 NFASCO94856 1347 aa13.82□□□□□ -0.2
SDC1-206ENST00000482879 MYH9P35579 1960 aaKnown RBP13.82□□□□□ -0.2
SDC1-206ENST00000482879 NKRFO15226 690 aaKnown RBP eCLIP13.81□□□□□ -0.21e-5■■■■□ 19.4
SDC1-206ENST00000482879 DHX15O43143 795 aaKnown RBP13.81□□□□□ -0.2
SDC1-206ENST00000482879 PPP6R2O75170 966 aa13.81□□□□□ -0.2
SDC1-206ENST00000482879 PSMD10O75832 226 aa13.81□□□□□ -0.2
SDC1-206ENST00000482879 GGPS1O95749 300 aa13.81□□□□□ -0.2
SDC1-206ENST00000482879 AKR1A1P14550 325 aa13.81□□□□□ -0.2
SDC1-206ENST00000482879 CCND3P30281 292 aaPredicted RBP13.81□□□□□ -0.2
SDC1-206ENST00000482879 TECP42680 631 aa13.81□□□□□ -0.2
SDC1-206ENST00000482879 IL17AQ16552 155 aa13.81□□□□□ -0.2
SDC1-206ENST00000482879 TMEM266Q2M3C6 531 aa13.81□□□□□ -0.2
SDC1-206ENST00000482879 CELF3Q5SZQ8 465 aaKnown RBP13.81□□□□□ -0.2
SDC1-206ENST00000482879 GJC2Q5T442 439 aaPredicted RBP13.81□□□□□ -0.2
SDC1-206ENST00000482879 CYFIP1Q7L576 1253 aa13.81□□□□□ -0.2
SDC1-206ENST00000482879 DHX37Q8IY37 1157 aaKnown RBP13.81□□□□□ -0.2
SDC1-206ENST00000482879 MLXIPQ9HAP2 919 aa13.81□□□□□ -0.2
SDC1-206ENST00000482879 HMX1Q9NP08 348 aaPredicted RBP13.81□□□□□ -0.2
SDC1-206ENST00000482879 TCEAL9Q9UHQ7 104 aa13.81□□□□□ -0.2
SDC1-206ENST00000482879 SRPRBQ9Y5M8 271 aaKnown RBP13.81□□□□□ -0.2
SDC1-206ENST00000482879 MORC2Q9Y6X9 1032 aaPredicted RBP13.81□□□□□ -0.2
SDC1-206ENST00000482879 VWA3AA6NCI4 1184 aa13.8□□□□□ -0.2
SDC1-206ENST00000482879 SEPT4O43236 478 aa13.8□□□□□ -0.2
SDC1-206ENST00000482879 GH1P01241 217 aa13.8□□□□□ -0.2
SDC1-206ENST00000482879 PTGS1P23219 599 aa13.8□□□□□ -0.2
SDC1-206ENST00000482879 ME1P48163 572 aa13.8□□□□□ -0.2
SDC1-206ENST00000482879 SP4Q02446 784 aa13.8□□□□□ -0.2
SDC1-206ENST00000482879 CLEC17AQ6ZS10 378 aa13.8□□□□□ -0.2
SDC1-206ENST00000482879 KRI1Q8N9T8 703 aaKnown RBP13.8□□□□□ -0.2
SDC1-206ENST00000482879 FERMT2Q96AC1 680 aa13.8□□□□□ -0.2
SDC1-206ENST00000482879 GBP4Q96PP9 640 aa13.8□□□□□ -0.2
SDC1-206ENST00000482879 JPH1Q9HDC5 661 aaPredicted RBP13.8□□□□□ -0.2
SDC1-206ENST00000482879 SLC9A2Q9UBY0 812 aa13.8□□□□□ -0.2
SDC1-206ENST00000482879 FBXO2Q9UK22 296 aaPredicted RBP13.8□□□□□ -0.2
SDC1-206ENST00000482879 DYNC1LI2O43237 492 aaPredicted RBP13.79□□□□□ -0.2
SDC1-206ENST00000482879 ADCY6O43306 1168 aa13.79□□□□□ -0.2
SDC1-206ENST00000482879 CHMP2AO43633 222 aa13.79□□□□□ -0.2
SDC1-206ENST00000482879 DUSP11O75319 330 aaKnown RBP13.79□□□□□ -0.2
SDC1-206ENST00000482879 FARP2O94887 1054 aaPredicted RBP13.79□□□□□ -0.2
SDC1-206ENST00000482879 FXR2P51116 673 aaKnown RBP eCLIP13.79□□□□□ -0.2
SDC1-206ENST00000482879 KRT76Q01546 638 aa13.79□□□□□ -0.2
SDC1-206ENST00000482879 GRIN1Q05586 938 aa13.79□□□□□ -0.2
SDC1-206ENST00000482879 PPP2R5CQ13362 524 aa13.79□□□□□ -0.2
SDC1-206ENST00000482879 LAMC2Q13753 1193 aa13.79□□□□□ -0.2
SDC1-206ENST00000482879 CSPP1Q1MSJ5 1256 aa13.79□□□□□ -0.2
SDC1-206ENST00000482879 NCAPH2Q6IBW4 605 aa13.79□□□□□ -0.2
SDC1-206ENST00000482879 METTL7BQ6UX53 244 aa13.79□□□□□ -0.2
SDC1-206ENST00000482879 OR6J1Q8NGC5 347 aa13.79□□□□□ -0.2
SDC1-206ENST00000482879 LENG1Q96BZ8 264 aaPredicted RBP13.79□□□□□ -0.2
SDC1-206ENST00000482879 SPATA33Q96N06 139 aa13.79□□□□□ -0.2
SDC1-206ENST00000482879 CLIC6Q96NY7 704 aa13.79□□□□□ -0.2
SDC1-206ENST00000482879 RAB34Q9BZG1 259 aa13.79□□□□□ -0.2
SDC1-206ENST00000482879 AP5M1Q9H0R1 490 aa13.79□□□□□ -0.2
SDC1-206ENST00000482879 UNC45AQ9H3U1 944 aa13.79□□□□□ -0.2
SDC1-206ENST00000482879 VAV3Q9UKW4 847 aa13.79□□□□□ -0.2
SDC1-206ENST00000482879 PCDHA7Q9UN72 937 aa13.79□□□□□ -0.2
SDC1-206ENST00000482879 GNEQ9Y223 722 aaKnown RBP13.79□□□□□ -0.2
SDC1-206ENST00000482879 CUTAO60888 179 aa13.78□□□□□ -0.2
SDC1-206ENST00000482879 CCNE2O96020 404 aa13.78□□□□□ -0.2
SDC1-206ENST00000482879 MYCP01106 439 aaPredicted RBP13.78□□□□□ -0.2
SDC1-206ENST00000482879 RARBP10826 455 aa13.78□□□□□ -0.2
SDC1-206ENST00000482879 LONP1P36776 959 aaKnown RBP13.78□□□□□ -0.2
SDC1-206ENST00000482879 ARHGAP1Q07960 439 aa13.78□□□□□ -0.2
SDC1-206ENST00000482879 SPIRE1Q08AE8 756 aa13.78□□□□□ -0.2
SDC1-206ENST00000482879 PDIA5Q14554 519 aa13.78□□□□□ -0.2
SDC1-206ENST00000482879 ZNF746Q6NUN9 644 aaPredicted RBP13.78□□□□□ -0.2
SDC1-206ENST00000482879 MIER3Q7Z3K6 550 aa13.78□□□□□ -0.2
SDC1-206ENST00000482879 TLK2Q86UE8 772 aa13.78□□□□□ -0.2
SDC1-206ENST00000482879 CSRNP2Q9H175 543 aa13.78□□□□□ -0.2
SDC1-206ENST00000482879 UNC93B1Q9H1C4 597 aa13.78□□□□□ -0.2
SDC1-206ENST00000482879 LRWD1Q9UFC0 647 aa13.78□□□□□ -0.2
SDC1-206ENST00000482879 DDX20Q9UHI6 824 aaKnown RBP13.78□□□□□ -0.2
SDC1-206ENST00000482879 Q9Y3F1 56 aa13.78□□□□□ -0.2
SDC1-206ENST00000482879 SAMM50Q9Y512 469 aa13.78□□□□□ -0.2
SDC1-206ENST00000482879 POTEMA6NI47 508 aa13.77□□□□□ -0.21
SDC1-206ENST00000482879 WDR64B1ANS9 1081 aa13.77□□□□□ -0.21
SDC1-206ENST00000482879 EML1O00423 815 aa13.77□□□□□ -0.21
SDC1-206ENST00000482879 NOP56O00567 594 aaKnown RBP13.77□□□□□ -0.21
SDC1-206ENST00000482879 ELP1O95163 1332 aa13.77□□□□□ -0.21
SDC1-206ENST00000482879 CCL5P13501 91 aa13.77□□□□□ -0.21
SDC1-206ENST00000482879 SFNP31947 248 aa13.77□□□□□ -0.21
SDC1-206ENST00000482879 JAK3P52333 1124 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms