RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 USP6NLQ92738 828 aa11.44□□□□□ -0.58
USP39-215ENST00000481409 SDF4Q9BRK5 362 aa11.44□□□□□ -0.58
USP39-215ENST00000481409 LRRC27Q9C0I9 530 aa11.44□□□□□ -0.58
USP39-215ENST00000481409 DACT1Q9NYF0 836 aa11.44□□□□□ -0.58
USP39-215ENST00000481409 STK17AQ9UEE5 414 aa11.44□□□□□ -0.58
USP39-215ENST00000481409 NRBP1Q9UHY1 535 aa11.44□□□□□ -0.58
USP39-215ENST00000481409 KIAA1217Q5T5P2 1943 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 MGAMO43451 1857 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 A0A1B0GVL5 298 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 TNPO2O14787 897 aaKnown RBP11.43□□□□□ -0.58
USP39-215ENST00000481409 PEX10O60683 326 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 DKC1O60832 514 aaKnown RBP eCLIP11.43□□□□□ -0.58
USP39-215ENST00000481409 HSPA6P17066 643 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 RPA1P27694 616 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 JAK3P52333 1124 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 PRMT2P55345 433 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 UBXN2AP68543 259 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 LACTBP83111 547 aaPredicted RBP11.43□□□□□ -0.58
USP39-215ENST00000481409 SP3Q02447 781 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 SPIRE1Q08AE8 756 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 ZNF746Q6NUN9 644 aaPredicted RBP11.43□□□□□ -0.58
USP39-215ENST00000481409 B3GNT9Q6UX72 402 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 CABP7Q86V35 215 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 SMAP1Q8IYB5 467 aaPredicted RBP11.43□□□□□ -0.58
USP39-215ENST00000481409 CEP57L1Q8IYX8 460 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 CYP2W1Q8TAV3 490 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 MAML3Q96JK9 1138 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 FGD4Q96M96 766 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 ZIC5Q96T25 663 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 APBA2Q99767 749 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 POLR3CQ9BUI4 534 aaPredicted RBP11.43□□□□□ -0.58
USP39-215ENST00000481409 NUP62CLQ9H1M0 184 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 ABHD16BQ9H3Z7 469 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 TUFT1Q9NNX1 390 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 DISC1Q9NRI5 854 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 RNF186Q9NXI6 227 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 VAV3Q9UKW4 847 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 LRRC37A2A6NM11 1700 aa11.43□□□□□ -0.58
USP39-215ENST00000481409 ASTN1O14525 1302 aa11.42□□□□□ -0.58
USP39-215ENST00000481409 RBM47A0AV96 593 aaKnown RBP11.42□□□□□ -0.58
USP39-215ENST00000481409 NKRFO15226 690 aaKnown RBP eCLIP11.42□□□□□ -0.58
USP39-215ENST00000481409 COBLO75128 1261 aa11.42□□□□□ -0.58
USP39-215ENST00000481409 NR1I2O75469 434 aa11.42□□□□□ -0.58
USP39-215ENST00000481409 PGK2P07205 417 aa11.42□□□□□ -0.58
USP39-215ENST00000481409 SLFN14P0C7P3 912 aa11.42□□□□□ -0.58
USP39-215ENST00000481409 ARP10275 920 aa11.42□□□□□ -0.58
USP39-215ENST00000481409 LIG1P18858 919 aa11.42□□□□□ -0.58
USP39-215ENST00000481409 AMPD3Q01432 767 aa11.42□□□□□ -0.58
USP39-215ENST00000481409 GRIN1Q05586 938 aa11.42□□□□□ -0.58
USP39-215ENST00000481409 EPHA7Q15375 998 aa11.42□□□□□ -0.58
USP39-215ENST00000481409 ARMCX2Q7L311 632 aa11.42□□□□□ -0.58
USP39-215ENST00000481409 SCFD2Q8WU76 684 aa11.42□□□□□ -0.58
USP39-215ENST00000481409 EPSTI1Q96J88 318 aa11.42□□□□□ -0.58
USP39-215ENST00000481409 CDK5RAP3Q96JB5 506 aa11.42□□□□□ -0.58
USP39-215ENST00000481409 GTPBP4Q9BZE4 634 aaKnown RBP11.42□□□□□ -0.58
USP39-215ENST00000481409 GOLPH3LQ9H4A5 285 aa11.42□□□□□ -0.58
USP39-215ENST00000481409 CLSTN2Q9H4D0 955 aa11.42□□□□□ -0.58
USP39-215ENST00000481409 MRVI1Q9Y6F6 885 aa11.42□□□□□ -0.58
USP39-215ENST00000481409 CASP8AP2Q9UKL3 1982 aa11.41□□□□□ -0.58
USP39-215ENST00000481409 LOXHD1Q8IVV2 1947 aa11.41□□□□□ -0.58
USP39-215ENST00000481409 WDR64B1ANS9 1081 aa11.41□□□□□ -0.58
USP39-215ENST00000481409 POLR2DO15514 142 aaKnown RBP11.41□□□□□ -0.58
USP39-215ENST00000481409 DHX15O43143 795 aaKnown RBP11.41□□□□□ -0.58
USP39-215ENST00000481409 RGS20O76081 388 aa11.41□□□□□ -0.58
USP39-215ENST00000481409 XRCC6P12956 609 aaKnown RBP eCLIP11.41□□□□□ -0.58
USP39-215ENST00000481409 KCNA2P16389 499 aa11.41□□□□□ -0.58
USP39-215ENST00000481409 C1QTNF8P60827 252 aa11.41□□□□□ -0.58
USP39-215ENST00000481409 TTLL4Q14679 1199 aa11.41□□□□□ -0.58
USP39-215ENST00000481409 RRAGBQ5VZM2 374 aa11.41□□□□□ -0.58
USP39-215ENST00000481409 CAVIN1Q6NZI2 390 aaKnown RBP11.41□□□□□ -0.58
USP39-215ENST00000481409 KRBA2Q6ZNG9 492 aa11.41□□□□□ -0.58
USP39-215ENST00000481409 RBM43Q6ZSC3 357 aaKnown RBP11.41□□□□□ -0.58
USP39-215ENST00000481409 CNNM3Q8NE01 707 aa11.41□□□□□ -0.58
USP39-215ENST00000481409 RASSF8Q8NHQ8 419 aa11.41□□□□□ -0.58
USP39-215ENST00000481409 SNX29Q8TEQ0 813 aa11.41□□□□□ -0.58
USP39-215ENST00000481409 ERO1AQ96HE7 468 aa11.41□□□□□ -0.58
USP39-215ENST00000481409 PURBQ96QR8 312 aaKnown RBP11.41□□□□□ -0.58
USP39-215ENST00000481409 TINF2Q9BSI4 451 aa11.41□□□□□ -0.58
USP39-215ENST00000481409 BEGAINQ9BUH8 593 aa11.41□□□□□ -0.58
USP39-215ENST00000481409 TNMDQ9H2S6 317 aa11.41□□□□□ -0.58
USP39-215ENST00000481409 GJD2Q9UKL4 321 aa11.41□□□□□ -0.58
USP39-215ENST00000481409 POTEMA6NI47 508 aa11.4□□□□□ -0.58
USP39-215ENST00000481409 LYPLA2O95372 231 aa11.4□□□□□ -0.58
USP39-215ENST00000481409 P4HBP07237 508 aaKnown RBP11.4□□□□□ -0.58
USP39-215ENST00000481409 STAT6P42226 847 aa11.4□□□□□ -0.58
USP39-215ENST00000481409 PSMC4P43686 418 aa11.4□□□□□ -0.58
USP39-215ENST00000481409 E2F4Q16254 413 aa11.4□□□□□ -0.58
USP39-215ENST00000481409 TMEM119Q4V9L6 283 aa11.4□□□□□ -0.58
USP39-215ENST00000481409 IQSEC1Q6DN90 963 aa11.4□□□□□ -0.58
USP39-215ENST00000481409 NCAPH2Q6IBW4 605 aa11.4□□□□□ -0.58
USP39-215ENST00000481409 METTL7BQ6UX53 244 aa11.4□□□□□ -0.58
USP39-215ENST00000481409 MIER3Q7Z3K6 550 aa11.4□□□□□ -0.58
USP39-215ENST00000481409 HSD17B14Q9BPX1 270 aa11.4□□□□□ -0.58
USP39-215ENST00000481409 MMTAG2Q9BU76 263 aaKnown RBP11.4□□□□□ -0.58
USP39-215ENST00000481409 JPH1Q9HDC5 661 aaPredicted RBP11.4□□□□□ -0.58
USP39-215ENST00000481409 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.4□□□□□ -0.58
USP39-215ENST00000481409 TMEM63CQ9P1W3 806 aa11.4□□□□□ -0.58
USP39-215ENST00000481409 SLC9A2Q9UBY0 812 aa11.4□□□□□ -0.58
USP39-215ENST00000481409 PCDHA10Q9Y5I2 948 aa11.4□□□□□ -0.58
USP39-215ENST00000481409 GPR25O00155 361 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 102.2 ms