RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 TTC38Q5R3I4 469 aa9.34□□□□□ -0.91
USP54-212ENST00000480210 MYSM1Q5VVJ2 828 aa9.34□□□□□ -0.91
USP54-212ENST00000480210 ZNF746Q6NUN9 644 aaPredicted RBP9.34□□□□□ -0.91
USP54-212ENST00000480210 SMAP1Q8IYB5 467 aaPredicted RBP9.34□□□□□ -0.91
USP54-212ENST00000480210 KLHDC9Q8NEP7 349 aa9.34□□□□□ -0.91
USP54-212ENST00000480210 PPTC7Q8NI37 304 aa9.34□□□□□ -0.91
USP54-212ENST00000480210 SEPT1Q8WYJ6 367 aa9.34□□□□□ -0.91
USP54-212ENST00000480210 ZNF577Q9BSK1 485 aa9.34□□□□□ -0.91
USP54-212ENST00000480210 AGO4Q9HCK5 861 aaKnown RBP9.34□□□□□ -0.91
USP54-212ENST00000480210 FOXD4L1Q9NU39 408 aa9.34□□□□□ -0.91
USP54-212ENST00000480210 SLC9A2Q9UBY0 812 aa9.34□□□□□ -0.91
USP54-212ENST00000480210 CIZ1Q9ULV3 898 aaPredicted RBP9.34□□□□□ -0.91
USP54-212ENST00000480210 MTMR6Q9Y217 621 aa9.34□□□□□ -0.91
USP54-212ENST00000480210 MORC2Q9Y6X9 1032 aaPredicted RBP9.34□□□□□ -0.91
USP54-212ENST00000480210 LOXHD1Q8IVV2 1947 aa9.33□□□□□ -0.92
USP54-212ENST00000480210 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.33□□□□□ -0.92
USP54-212ENST00000480210 NOP56O00567 594 aaKnown RBP9.33□□□□□ -0.92
USP54-212ENST00000480210 ADAMTS3O15072 1205 aa9.33□□□□□ -0.92
USP54-212ENST00000480210 EDIL3O43854 480 aa9.33□□□□□ -0.92
USP54-212ENST00000480210 NEMFO60524 1076 aa9.33□□□□□ -0.92
USP54-212ENST00000480210 DKC1O60832 514 aaKnown RBP eCLIP9.33□□□□□ -0.92
USP54-212ENST00000480210 DTNBO60941 627 aa9.33□□□□□ -0.92
USP54-212ENST00000480210 ADAMTS4O75173 837 aa9.33□□□□□ -0.92
USP54-212ENST00000480210 FARP2O94887 1054 aaPredicted RBP9.33□□□□□ -0.92
USP54-212ENST00000480210 ARIH2O95376 493 aa9.33□□□□□ -0.92
USP54-212ENST00000480210 GGPS1O95749 300 aa9.33□□□□□ -0.92
USP54-212ENST00000480210 C6orf222P0C671 652 aaPredicted RBP9.33□□□□□ -0.92
USP54-212ENST00000480210 ZSCAN22P10073 491 aaPredicted RBP9.33□□□□□ -0.92
USP54-212ENST00000480210 ARP10275 920 aa9.33□□□□□ -0.92
USP54-212ENST00000480210 UBA1P22314 1058 aaKnown RBP9.33□□□□□ -0.92
USP54-212ENST00000480210 PRPHP41219 470 aa9.33□□□□□ -0.92
USP54-212ENST00000480210 SEMA3FQ13275 785 aa9.33□□□□□ -0.92
USP54-212ENST00000480210 LRRC41Q15345 812 aa9.33□□□□□ -0.92
USP54-212ENST00000480210 FSCN1Q16658 493 aaKnown RBP9.33□□□□□ -0.92
USP54-212ENST00000480210 EARS2Q5JPH6 523 aaKnown RBP9.33□□□□□ -0.92
USP54-212ENST00000480210 GNASQ5JWF2 1037 aa9.33□□□□□ -0.92
USP54-212ENST00000480210 ARL6IP4Q66PJ3 421 aaKnown RBP9.33□□□□□ -0.92
USP54-212ENST00000480210 PPP4R3CPQ6ZMV5 832 aa9.33□□□□□ -0.92
USP54-212ENST00000480210 CYP2W1Q8TAV3 490 aa9.33□□□□□ -0.92
USP54-212ENST00000480210 SLC5A5Q92911 643 aa9.33□□□□□ -0.92
USP54-212ENST00000480210 ZNF396Q96N95 335 aaPredicted RBP9.33□□□□□ -0.92
USP54-212ENST00000480210 KATNAL1Q9BW62 490 aa9.33□□□□□ -0.92
USP54-212ENST00000480210 TEKT3Q9BXF9 490 aa9.33□□□□□ -0.92
USP54-212ENST00000480210 RAB34Q9BZG1 259 aa9.33□□□□□ -0.92
USP54-212ENST00000480210 JPH1Q9HDC5 661 aaPredicted RBP9.33□□□□□ -0.92
USP54-212ENST00000480210 KCNMB3Q9NPA1 279 aa9.33□□□□□ -0.92
USP54-212ENST00000480210 ELP1O95163 1332 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 SYNRGQ9UMZ2 1314 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 SCN10AQ9Y5Y9 1956 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 KIF28PB7ZC32 967 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 MSH4O15457 936 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 GAS7O60861 476 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 ATP9AO75110 1047 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 ATG7O95352 703 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 TDP2O95551 362 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 BRD1O95696 1058 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 F13A1P00488 732 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 HOXD8P13378 290 aaPredicted RBP9.32□□□□□ -0.92
USP54-212ENST00000480210 SLC26A2P50443 739 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 JAK3P52333 1124 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 SP2Q02086 613 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 ARHGAP1Q07960 439 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 RESTQ13127 1097 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 PDIA5Q14554 519 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 HSP90AA2PQ14568 343 aaPredicted RBP9.32□□□□□ -0.92
USP54-212ENST00000480210 CALCRLQ16602 461 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 TMEM266Q2M3C6 531 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 LRCH2Q5VUJ6 765 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 MIS18BP1Q6P0N0 1132 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 CYFIP1Q7L576 1253 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 KCTD17Q8N5Z5 321 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 ETNPPLQ8TBG4 499 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 LENG9Q96B70 501 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 GLT1D1Q96MS3 346 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 SPATA33Q96N06 139 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 MTMR9Q96QG7 549 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.32□□□□□ -0.92
USP54-212ENST00000480210 CFAP45Q9UL16 551 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 PCDHA12Q9UN75 941 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 PHF24Q9UPV7 400 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 PCDHA10Q9Y5I2 948 aa9.32□□□□□ -0.92
USP54-212ENST00000480210 CCDC85CA6NKD9 419 aa9.31□□□□□ -0.92
USP54-212ENST00000480210 WDR64B1ANS9 1081 aa9.31□□□□□ -0.92
USP54-212ENST00000480210 DHX15O43143 795 aaKnown RBP9.31□□□□□ -0.92
USP54-212ENST00000480210 SLC26A4O43511 780 aa9.31□□□□□ -0.92
USP54-212ENST00000480210 PSMD10O75832 226 aa9.31□□□□□ -0.92
USP54-212ENST00000480210 PGK1P00558 417 aa9.31□□□□□ -0.92
USP54-212ENST00000480210 PSAPP07602 524 aa9.31□□□□□ -0.92
USP54-212ENST00000480210 MMP3P08254 477 aa9.31□□□□□ -0.92
USP54-212ENST00000480210 OR52Z1P0C646 297 aa9.31□□□□□ -0.92
USP54-212ENST00000480210 ATP2B1P20020 1258 aa9.31□□□□□ -0.92
USP54-212ENST00000480210 MUTP22033 750 aa9.31□□□□□ -0.92
USP54-212ENST00000480210 MCM7P33993 719 aa9.31□□□□□ -0.92
USP54-212ENST00000480210 TOB1P50616 345 aaPredicted RBP9.31□□□□□ -0.92
USP54-212ENST00000480210 PTPN11Q06124 597 aaPredicted RBP9.31□□□□□ -0.92
USP54-212ENST00000480210 PPP2R5CQ13362 524 aa9.31□□□□□ -0.92
USP54-212ENST00000480210 ZNF174Q15697 407 aa9.31□□□□□ -0.92
USP54-212ENST00000480210 KCNA10Q16322 511 aa9.31□□□□□ -0.92
USP54-212ENST00000480210 C1orf53Q5VUE5 145 aa9.31□□□□□ -0.92
USP54-212ENST00000480210 FAM160B1Q5W0V3 765 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms