RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 ZNF335Q9H4Z2 1342 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-224ENST00000478916 SPAG7O75391 227 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 ESRRAP11474 423 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-224ENST00000478916 LRMPQ12912 555 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 AOC3Q16853 763 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 GRAMD1BQ3KR37 738 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 SH3GL3Q99963 347 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 METTL14Q9HCE5 456 aaKnown RBP9.54□□□□□ -0.88
SYNE1-224ENST00000478916 SEPT9Q9UHD8 586 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-224ENST00000478916 ZNF148Q9UQR1 794 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 ABL1P00519 1130 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 ADALQ6DHV7 355 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 PDXDC1Q6P996 788 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 TRMT10CQ7L0Y3 403 aaKnown RBP9.54□□□□□ -0.88
SYNE1-224ENST00000478916 SESTD1Q86VW0 696 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 TRAIPQ9BWF2 469 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 SERTAD1Q9UHV2 236 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 ATF5Q9Y2D1 282 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-224ENST00000478916 EPN1Q9Y6I3 576 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-224ENST00000478916 SOS2Q07890 1332 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-224ENST00000478916 STAT2P52630 851 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 YWHAGP61981 247 aaKnown RBP eCLIP9.54□□□□□ -0.88
SYNE1-224ENST00000478916 ARMCX5Q6P1M9 558 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 NBPF10Q6P3W6 841 aaKnown RBP9.54□□□□□ -0.88
SYNE1-224ENST00000478916 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.54□□□□□ -0.88
SYNE1-224ENST00000478916 FGD4Q96M96 766 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 PIM2Q9P1W9 311 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 AKT3Q9Y243 479 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 HNRNPCP07910 306 aaKnown RBP eCLIP9.54□□□□□ -0.88
SYNE1-224ENST00000478916 RBM6P78332 1123 aaKnown RBP9.54□□□□□ -0.88
SYNE1-224ENST00000478916 PDE1BQ01064 536 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 FLOT2Q14254 428 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 NBPF9Q3BBW0 867 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 TMCO5AQ8N6Q1 288 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 ARMC2Q8NEN0 867 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 SERPINB13Q9UIV8 391 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 INTUQ9ULD6 942 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 PREX2Q70Z35 1606 aa9.54□□□□□ -0.88
SYNE1-224ENST00000478916 SPDYE16A6NNV3 312 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-224ENST00000478916 SPDYE2Q495Y8 402 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 SLC7A3Q8WY07 619 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 YIPF3Q9GZM5 350 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 ARMCX3Q9UH62 379 aaPredicted RBP9.53□□□□□ -0.88
SYNE1-224ENST00000478916 RAD17O75943 681 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 PYGBP11216 843 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 ARHGDIAP52565 204 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 SPICE1Q8N0Z3 855 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 CMTR1Q8N1G2 835 aaKnown RBP9.53□□□□□ -0.88
SYNE1-224ENST00000478916 ARHGAP18Q8N392 663 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 TRIML1Q8N9V2 468 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 ZNF577Q9BSK1 485 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 PI4KBQ9UBF8 816 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 TYW5A2RUC4 315 aaKnown RBP9.53□□□□□ -0.88
SYNE1-224ENST00000478916 ME3Q16798 604 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 SCYL2Q6P3W7 929 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 FAM173BQ6P4H8 233 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 KIAA2013Q8IYS2 634 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 COA1Q9GZY4 146 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 PTPN22Q9Y2R2 807 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 ARHGEF37A1IGU5 675 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 NLRP10Q86W26 655 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 FBXL13Q8NEE6 735 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 MAP3K4Q9Y6R4 1608 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 KDM1AO60341 852 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 PTPREP23469 700 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 ADORA1P30542 326 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 POLR2BP30876 1174 aaKnown RBP9.53□□□□□ -0.88
SYNE1-224ENST00000478916 CLEC4GQ6UXB4 293 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 TADA2BQ86TJ2 420 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 EPB41L5Q9HCM4 733 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 SMYD2Q9NRG4 433 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 GIMAP4Q9NUV9 329 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 MYO3BQ8WXR4 1341 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 GTPBP10A4D1E9 387 aaKnown RBP9.53□□□□□ -0.88
SYNE1-224ENST00000478916 SYCE1LA8MT33 242 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 DCTN3O75935 186 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 BMP3P12645 472 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 PIK3CAP42336 1068 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 MSH2P43246 934 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 KAZNQ674X7 775 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 DCLK2Q8N568 766 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 MAGOHBQ96A72 148 aaKnown RBP9.53□□□□□ -0.88
SYNE1-224ENST00000478916 ANAPC5Q9UJX4 755 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 SLC4A7Q9Y6M7 1214 aa9.53□□□□□ -0.88
SYNE1-224ENST00000478916 CHD1O14646 1710 aa9.52□□□□□ -0.88
SYNE1-224ENST00000478916 NVLO15381 856 aaKnown RBP9.52□□□□□ -0.88
SYNE1-224ENST00000478916 ATP5HO75947 161 aa9.52□□□□□ -0.88
SYNE1-224ENST00000478916 RWDD2BP57060 319 aa9.52□□□□□ -0.88
SYNE1-224ENST00000478916 ELMSAN1Q6PJG2 1045 aa9.52□□□□□ -0.88
SYNE1-224ENST00000478916 METTL23Q86XA0 190 aa9.52□□□□□ -0.88
SYNE1-224ENST00000478916 GFM2Q969S9 779 aaKnown RBP9.52□□□□□ -0.88
SYNE1-224ENST00000478916 WDR11Q9BZH6 1224 aa9.52□□□□□ -0.88
SYNE1-224ENST00000478916 CHGBP05060 677 aa9.52□□□□□ -0.89
SYNE1-224ENST00000478916 GCFC2P16383 781 aaKnown RBP9.52□□□□□ -0.89
SYNE1-224ENST00000478916 ZSCAN20P17040 1043 aaPredicted RBP9.52□□□□□ -0.89
SYNE1-224ENST00000478916 NNTQ13423 1086 aa9.52□□□□□ -0.89
SYNE1-224ENST00000478916 TMED2Q15363 201 aa9.52□□□□□ -0.89
SYNE1-224ENST00000478916 BZW2Q9Y6E2 419 aaKnown RBP9.52□□□□□ -0.89
SYNE1-224ENST00000478916 SGK1O00141 431 aa9.52□□□□□ -0.89
SYNE1-224ENST00000478916 GTPBP6O43824 516 aaPredicted RBP9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms