RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 LSP1P33241 339 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 RECQLP46063 649 aaPredicted RBP6.79□□□□□ -1.32
UPF3B-203ENST00000478840 IRF9Q00978 393 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 UBE4AQ14139 1066 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 LRRC32Q14392 662 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 GFOD2Q3B7J2 385 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 ARHGAP36Q6ZRI8 547 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 CPA6Q8N4T0 437 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 ZNF610Q8N9Z0 462 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 PLEKHO2Q8TD55 490 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 ASB11Q8WXH4 323 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 LINC01599Q8WXQ3 324 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 FAXDC2Q96IV6 333 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 MAP6Q96JE9 813 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 ARNT2Q9HBZ2 717 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 C14orf119Q9NWQ9 140 aa6.79□□□□□ -1.32
UPF3B-203ENST00000478840 LUC7L2Q9Y383 392 aaKnown RBP6.79□□□□□ -1.32
UPF3B-203ENST00000478840 CYP26A1O43174 497 aa6.78□□□□□ -1.32
UPF3B-203ENST00000478840 PRPF3O43395 683 aaKnown RBP6.78□□□□□ -1.32
UPF3B-203ENST00000478840 SNUPNO95149 360 aaKnown RBP6.78□□□□□ -1.32
UPF3B-203ENST00000478840 KRT18P05783 430 aaKnown RBP6.78□□□□□ -1.32
UPF3B-203ENST00000478840 RHBDL3P58872 404 aa6.78□□□□□ -1.32
UPF3B-203ENST00000478840 DOC2BQ14184 412 aa6.78□□□□□ -1.32
UPF3B-203ENST00000478840 ZNF174Q15697 407 aa6.78□□□□□ -1.32
UPF3B-203ENST00000478840 FIGNQ5HY92 759 aa6.78□□□□□ -1.32
UPF3B-203ENST00000478840 MROH9Q5TGP6 573 aa6.78□□□□□ -1.32
UPF3B-203ENST00000478840 ANGEL2Q5VTE6 544 aaKnown RBP6.78□□□□□ -1.32
UPF3B-203ENST00000478840 SLCO6A1Q86UG4 719 aa6.78□□□□□ -1.32
UPF3B-203ENST00000478840 KIAA1958Q8N8K9 716 aa6.78□□□□□ -1.32
UPF3B-203ENST00000478840 SH3RF2Q8TEC5 729 aa6.78□□□□□ -1.32
UPF3B-203ENST00000478840 DLG3Q92796 817 aa6.78□□□□□ -1.32
UPF3B-203ENST00000478840 PMM1Q92871 262 aa6.78□□□□□ -1.32
UPF3B-203ENST00000478840 TRMT2BQ96GJ1 504 aaKnown RBP6.78□□□□□ -1.32
UPF3B-203ENST00000478840 PSMD1Q99460 953 aa6.78□□□□□ -1.32
UPF3B-203ENST00000478840 MTA3Q9BTC8 594 aa6.78□□□□□ -1.32
UPF3B-203ENST00000478840 LRRC4CQ9HCJ2 640 aa6.78□□□□□ -1.32
UPF3B-203ENST00000478840 SLC6A20Q9NP91 592 aa6.78□□□□□ -1.32
UPF3B-203ENST00000478840 TPSG1Q9NRR2 321 aa6.78□□□□□ -1.32
UPF3B-203ENST00000478840 IP6K2Q9UHH9 426 aa6.78□□□□□ -1.32
UPF3B-203ENST00000478840 ANKRD6Q9Y2G4 727 aa6.78□□□□□ -1.32
UPF3B-203ENST00000478840 GIT1Q9Y2X7 761 aa6.78□□□□□ -1.32
UPF3B-203ENST00000478840 B3GALT1Q9Y5Z6 326 aa6.78□□□□□ -1.32
UPF3B-203ENST00000478840 LOC102724159A0A0B4J2E5 919 aa6.77□□□□□ -1.33
UPF3B-203ENST00000478840 C22orf46C9J442 243 aa6.77□□□□□ -1.33
UPF3B-203ENST00000478840 MAN2B1O00754 1011 aa6.77□□□□□ -1.33
UPF3B-203ENST00000478840 NKRFO15226 690 aaKnown RBP eCLIP6.77□□□□□ -1.33
UPF3B-203ENST00000478840 CLASP2O75122 1294 aaKnown RBP6.77□□□□□ -1.33
UPF3B-203ENST00000478840 MT-CO1P00395 513 aa6.77□□□□□ -1.33
UPF3B-203ENST00000478840 MYL1P05976 194 aa6.77□□□□□ -1.33
UPF3B-203ENST00000478840 FOSL1P15407 271 aa6.77□□□□□ -1.33
UPF3B-203ENST00000478840 FSTP19883 344 aa6.77□□□□□ -1.33
UPF3B-203ENST00000478840 FPR2P25090 351 aa6.77□□□□□ -1.33
UPF3B-203ENST00000478840 KIR2DL1P43626 348 aaPredicted RBP6.77□□□□□ -1.33
UPF3B-203ENST00000478840 KIR2DL2P43627 348 aaPredicted RBP6.77□□□□□ -1.33
UPF3B-203ENST00000478840 PRKCQQ04759 706 aa6.77□□□□□ -1.33
UPF3B-203ENST00000478840 PWP2Q15269 919 aaKnown RBP6.77□□□□□ -1.33
UPF3B-203ENST00000478840 PCBP2Q15366 365 aaKnown RBP eCLIP6.77□□□□□ -1.33
UPF3B-203ENST00000478840 PTRH1Q86Y79 214 aaKnown RBP6.77□□□□□ -1.33
UPF3B-203ENST00000478840 NLGN4XQ8N0W4 816 aa6.77□□□□□ -1.33
UPF3B-203ENST00000478840 UHMK1Q8TAS1 419 aaKnown RBP6.77□□□□□ -1.33
UPF3B-203ENST00000478840 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.77□□□□□ -1.33
UPF3B-203ENST00000478840 LMBR1Q8WVP7 490 aa6.77□□□□□ -1.33
UPF3B-203ENST00000478840 SLC39A13Q96H72 371 aa6.77□□□□□ -1.33
UPF3B-203ENST00000478840 HHIPL1Q96JK4 782 aa6.77□□□□□ -1.33
UPF3B-203ENST00000478840 HRASLS5Q96KN8 279 aa6.77□□□□□ -1.33
UPF3B-203ENST00000478840 NUP88Q99567 741 aaPredicted RBP6.77□□□□□ -1.33
UPF3B-203ENST00000478840 ELF4Q99607 663 aaPredicted RBP6.77□□□□□ -1.33
UPF3B-203ENST00000478840 ZNF700Q9H0M5 742 aa6.77□□□□□ -1.33
UPF3B-203ENST00000478840 ACSS2Q9NR19 701 aa6.77□□□□□ -1.33
UPF3B-203ENST00000478840 PIM2Q9P1W9 311 aa6.77□□□□□ -1.33
UPF3B-203ENST00000478840 GULP1Q9UBP9 304 aa6.77□□□□□ -1.33
UPF3B-203ENST00000478840 ZC3H7BQ9UGR2 993 aaKnown RBP6.77□□□□□ -1.33
UPF3B-203ENST00000478840 VAV3Q9UKW4 847 aa6.77□□□□□ -1.33
UPF3B-203ENST00000478840 NOB1Q9ULX3 412 aaKnown RBP6.77□□□□□ -1.33
UPF3B-203ENST00000478840 SRPK3Q9UPE1 567 aa6.77□□□□□ -1.33
UPF3B-203ENST00000478840 PRR19A6NJB7 356 aa6.76□□□□□ -1.33
UPF3B-203ENST00000478840 DGKIO75912 1065 aa6.76□□□□□ -1.33
UPF3B-203ENST00000478840 CYP17A1P05093 508 aa6.76□□□□□ -1.33
UPF3B-203ENST00000478840 SLC9A1P19634 815 aa6.76□□□□□ -1.33
UPF3B-203ENST00000478840 CCND1P24385 295 aa6.76□□□□□ -1.33
UPF3B-203ENST00000478840 FSTL4Q6MZW2 842 aa6.76□□□□□ -1.33
UPF3B-203ENST00000478840 CYP4F22Q6NT55 531 aa6.76□□□□□ -1.33
UPF3B-203ENST00000478840 CC2D1AQ6P1N0 951 aaPredicted RBP6.76□□□□□ -1.33
UPF3B-203ENST00000478840 DGKHQ86XP1 1220 aa6.76□□□□□ -1.33
UPF3B-203ENST00000478840 ZDHHC13Q8IUH4 622 aa6.76□□□□□ -1.33
UPF3B-203ENST00000478840 TEX2Q8IWB9 1127 aa6.76□□□□□ -1.33
UPF3B-203ENST00000478840 ASIC4Q96FT7 647 aa6.76□□□□□ -1.33
UPF3B-203ENST00000478840 JMJD8Q96S16 334 aa6.76□□□□□ -1.33
UPF3B-203ENST00000478840 ORAI2Q96SN7 254 aa6.76□□□□□ -1.33
UPF3B-203ENST00000478840 ZDHHC5Q9C0B5 715 aa6.76□□□□□ -1.33
UPF3B-203ENST00000478840 PDGFDQ9GZP0 370 aaPredicted RBP6.76□□□□□ -1.33
UPF3B-203ENST00000478840 MYH16Q9H6N6 1097 aa6.76□□□□□ -1.33
UPF3B-203ENST00000478840 ZMAT4Q9H898 229 aa6.76□□□□□ -1.33
UPF3B-203ENST00000478840 TOPORSQ9NS56 1045 aaPredicted RBP6.76□□□□□ -1.33
UPF3B-203ENST00000478840 LMCD1Q9NZU5 365 aa6.76□□□□□ -1.33
UPF3B-203ENST00000478840 MARCH2Q9P0N8 246 aa6.76□□□□□ -1.33
UPF3B-203ENST00000478840 ZNF652Q9Y2D9 606 aa6.76□□□□□ -1.33
UPF3B-203ENST00000478840 COA3Q9Y2R0 106 aaPredicted RBP6.76□□□□□ -1.33
UPF3B-203ENST00000478840 PLIN1O60240 522 aa6.75□□□□□ -1.33
UPF3B-203ENST00000478840 HIP1RO75146 1068 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms