RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 HCSTQ9UBK5 93 aa5.79□□□□□ -1.48
USP4-209ENST00000475873 DBNLQ9UJU6 430 aaKnown RBP5.79□□□□□ -1.48
USP4-209ENST00000475873 RWDD3Q9Y3V2 267 aa5.79□□□□□ -1.48
USP4-209ENST00000475873 PTPRCP08575 1304 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 MYH7BA7E2Y1 1941 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 SDK1Q7Z5N4 2213 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 IGKV6D-41A0A0C4DH26 115 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 TCRBV5S4A2TA0A5A2 114 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 SRRM3A6NNA2 597 aaPredicted RBP5.78□□□□□ -1.48
USP4-209ENST00000475873 NFIBO00712 420 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 FSCN2O14926 492 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 SRGAP3O43295 1099 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 GDF9O60383 454 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 LRRN2O75325 713 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 F2P00734 622 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 CHGBP05060 677 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 HOXD8P13378 290 aaPredicted RBP5.78□□□□□ -1.48
USP4-209ENST00000475873 HOXC8P31273 242 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 MTX1Q13505 466 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 BAATQ14032 418 aaPredicted RBP5.78□□□□□ -1.48
USP4-209ENST00000475873 BTG3Q14201 252 aaPredicted RBP5.78□□□□□ -1.48
USP4-209ENST00000475873 MFSD10Q14728 455 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 CCDC6Q16204 474 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 KIAA0753Q2KHM9 967 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 C12orf60Q5U649 245 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 LLGL2Q6P1M3 1020 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 ZC3H14Q6PJT7 736 aaKnown RBP5.78□□□□□ -1.48
USP4-209ENST00000475873 UNQ6494/PRO21346Q6UXR6 183 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 NSMFQ6X4W1 530 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 SLC30A10Q6XR72 485 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 CERS3Q8IU89 383 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 C1orf210Q8IVY1 113 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 PPP2R3CQ969Q6 453 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 USP18Q9UMW8 372 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 DUSP12Q9UNI6 340 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 LHX6Q9UPM6 363 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 SMG5Q9UPR3 1016 aaKnown RBP5.78□□□□□ -1.48
USP4-209ENST00000475873 NR2E1Q9Y466 385 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 PATJQ8NI35 1801 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 ZNF462Q96JM2 2506 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 TENM4Q6N022 2769 aa5.78□□□□□ -1.48
USP4-209ENST00000475873 RAD50Q92878 1312 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 MAGEB6P1A0A0J9YX57 407 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 PNMA6EA0A0J9YXQ4 647 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 HIDE1A8MVS5 230 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 NKRFO15226 690 aaKnown RBP eCLIP5.77□□□□□ -1.49
USP4-209ENST00000475873 KINO60870 393 aaKnown RBP5.77□□□□□ -1.49
USP4-209ENST00000475873 PPFIA3O75145 1194 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 TXNP10599 105 aaKnown RBP5.77□□□□□ -1.49
USP4-209ENST00000475873 PDE6AP16499 860 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 RASA1P20936 1047 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 PDE4BQ07343 736 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 APOBRQ0VD83 1088 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 LY6KQ17RY6 165 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 PAN2Q504Q3 1202 aaKnown RBP5.77□□□□□ -1.49
USP4-209ENST00000475873 TNNI3KQ59H18 835 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 SPECC1Q5M775 1068 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 WDR63Q8IWG1 891 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 C12orf76Q8N812 135 aaPredicted RBP5.77□□□□□ -1.49
USP4-209ENST00000475873 C7orf31Q8N865 590 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 CCER1Q8TC90 406 aaPredicted RBP5.77□□□□□ -1.49
USP4-209ENST00000475873 RASGRP4Q8TDF6 673 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 SCFD2Q8WU76 684 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 SSH1Q8WYL5 1049 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 MAP4K1Q92918 833 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 CHMP4CQ96CF2 233 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 BBC3Q96PG8 261 aaPredicted RBP5.77□□□□□ -1.49
USP4-209ENST00000475873 CRNKL1Q9BZJ0 848 aaKnown RBP5.77□□□□□ -1.49
USP4-209ENST00000475873 EPC1Q9H2F5 836 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 ARMT1Q9H993 441 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 TBC1D17Q9HA65 648 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 NYAP2Q9P242 653 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 FEM1BQ9UK73 627 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 WASF3Q9UPY6 502 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 SALL2Q9Y467 1007 aaPredicted RBP5.77□□□□□ -1.49
USP4-209ENST00000475873 SUPT16HQ9Y5B9 1047 aaKnown RBP5.77□□□□□ -1.49
USP4-209ENST00000475873 FPGT-TNNI3KV9GXZ4 949 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 DOCK8Q8NF50 2099 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 LAMA1P25391 3075 aa5.77□□□□□ -1.49
USP4-209ENST00000475873 SPTA1P02549 2419 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 LOC105378220A0A1B0GUY1 285 aaPredicted RBP5.76□□□□□ -1.49
USP4-209ENST00000475873 TMEM232C9JQI7 657 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 ENPP3O14638 875 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 TM4SF5O14894 197 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 TREHO43280 583 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 LILRB5O75023 590 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 IGSF3O75054 1194 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 N4BP1O75113 896 aaKnown RBP5.76□□□□□ -1.49
USP4-209ENST00000475873 KCNA4P22459 653 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 TBC1D8BQ0IIM8 1120 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 SPEM2Q0P670 501 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 TDGQ13569 410 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 TKFCQ3LXA3 575 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 NAALADL2Q58DX5 795 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 BRDTQ58F21 947 aaPredicted RBP5.76□□□□□ -1.49
USP4-209ENST00000475873 CHST3Q7LGC8 479 aa5.76□□□□□ -1.49
USP4-209ENST00000475873 RTN4RL1Q86UN2 441 aaPredicted RBP5.76□□□□□ -1.49
USP4-209ENST00000475873 GPR161Q8N6U8 529 aaKnown RBP5.76□□□□□ -1.49
USP4-209ENST00000475873 TDRD5Q8NAT2 981 aaKnown RBP5.76□□□□□ -1.49
USP4-209ENST00000475873 ZBTB44Q8NCP5 570 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms