RNA–Protein interactions for RNA: ENST00000475235.1

HLA-DOB-208, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,514 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-208ENST00000475235 EPHB4P54760 987 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 NAPAP54920 295 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 FUT2Q10981 343 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 SESTD1Q86VW0 696 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 OTUD6BQ8N6M0 293 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 CDHR1Q96JP9 859 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 SPATA33Q96N06 139 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 AGXT2Q9BYV1 514 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 TRMT13Q9NUP7 481 aaKnown RBP13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 NOD1Q9Y239 953 aa13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 V9GY48 417 aaPredicted RBP13.18□□□□□ -0.3
HLA-DOB-208ENST00000475235 NID2Q14112 1375 aa13.17□□□□□ -0.3
HLA-DOB-208ENST00000475235 SPATA31C2B4DYI2 1134 aa13.17□□□□□ -0.3
HLA-DOB-208ENST00000475235 F2P00734 622 aa13.17□□□□□ -0.3
HLA-DOB-208ENST00000475235 HOXD8P13378 290 aaPredicted RBP13.17□□□□□ -0.3
HLA-DOB-208ENST00000475235 SMAD3P84022 425 aaKnown RBP13.17□□□□□ -0.3
HLA-DOB-208ENST00000475235 DMTNQ08495 405 aa13.17□□□□□ -0.3
HLA-DOB-208ENST00000475235 APOBRQ0VD83 1088 aa13.17□□□□□ -0.3
HLA-DOB-208ENST00000475235 WWC2Q6AWC2 1192 aa13.17□□□□□ -0.3
HLA-DOB-208ENST00000475235 FAM109BQ6ICB4 259 aaPredicted RBP13.17□□□□□ -0.3
HLA-DOB-208ENST00000475235 METTL7BQ6UX53 244 aa13.17□□□□□ -0.3
HLA-DOB-208ENST00000475235 GIMAP8Q8ND71 665 aaPredicted RBP13.17□□□□□ -0.3
HLA-DOB-208ENST00000475235 GPKOWQ92917 476 aaPredicted RBP eCLIP13.17□□□□□ -0.3
HLA-DOB-208ENST00000475235 USP26Q9BXU7 913 aa13.17□□□□□ -0.3
HLA-DOB-208ENST00000475235 MTIF3Q9H2K0 278 aaKnown RBP13.17□□□□□ -0.3
HLA-DOB-208ENST00000475235 IL23AQ9NPF7 189 aa13.17□□□□□ -0.3
HLA-DOB-208ENST00000475235 FAM217BQ9NTX9 383 aaPredicted RBP13.17□□□□□ -0.3
HLA-DOB-208ENST00000475235 RTEL1Q9NZ71 1219 aa13.17□□□□□ -0.3
HLA-DOB-208ENST00000475235 NOP56O00567 594 aaKnown RBP13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 FOSP01100 380 aaPredicted RBP13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 CDC27P30260 824 aa13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 ADD1P35611 737 aaKnown RBP13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 CHMP4BP1P59074 171 aa13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 SP2Q02086 613 aa13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 BFSP2Q13515 415 aa13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 GSE1Q14687 1217 aa13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 SETDB1Q15047 1291 aa13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 UBE2SQ16763 222 aa13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 HSDL1Q3SXM5 330 aa13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 RUFY3Q7L099 469 aa13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 RPUSD2Q8IZ73 545 aaKnown RBP13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 DEFB123Q8N688 67 aa13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 CCDC155Q8N6L0 562 aa13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 C7orf31Q8N865 590 aa13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 KAT2BQ92831 832 aa13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 GPRASP2Q96D09 838 aa13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 SENP7Q9BQF6 1050 aa13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 TM6SF1Q9BZW5 370 aa13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 ZSWIM6Q9HCJ5 1215 aa13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 RIC8AQ9NPQ8 531 aa13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 BARHL2Q9NY43 387 aa13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 PCDHA6Q9UN73 950 aa13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 PCDHA8Q9Y5H6 950 aa13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 CYP46A1Q9Y6A2 500 aa13.16□□□□□ -0.3
HLA-DOB-208ENST00000475235 UMODL1Q5DID0 1318 aa13.15□□□□□ -0.3
HLA-DOB-208ENST00000475235 PFKMP08237 780 aa13.15□□□□□ -0.3
HLA-DOB-208ENST00000475235 CYP2C9P11712 490 aa13.15□□□□□ -0.3
HLA-DOB-208ENST00000475235 PSEN2P49810 448 aa13.15□□□□□ -0.3
HLA-DOB-208ENST00000475235 ADCY7P51828 1080 aa13.15□□□□□ -0.3
HLA-DOB-208ENST00000475235 CCL23P55773 120 aa13.15□□□□□ -0.3
HLA-DOB-208ENST00000475235 EVCP57679 992 aa13.15□□□□□ -0.3
HLA-DOB-208ENST00000475235 MFSD10Q14728 455 aa13.15□□□□□ -0.3
HLA-DOB-208ENST00000475235 PFKFB3Q16875 520 aaPredicted RBP13.15□□□□□ -0.3
HLA-DOB-208ENST00000475235 TMEM240Q5SV17 173 aa13.15□□□□□ -0.3
HLA-DOB-208ENST00000475235 RETREG2Q8NC44 543 aa13.15□□□□□ -0.3
HLA-DOB-208ENST00000475235 CCDC12Q8WUD4 166 aaPredicted RBP13.15□□□□□ -0.3
HLA-DOB-208ENST00000475235 GTF2IRD1Q9UHL9 959 aa13.15□□□□□ -0.3
HLA-DOB-208ENST00000475235 SMCO2A6NFE2 343 aa13.14□□□□□ -0.31
HLA-DOB-208ENST00000475235 STXBP3O00186 592 aa13.14□□□□□ -0.31
HLA-DOB-208ENST00000475235 HAS3O00219 553 aa13.14□□□□□ -0.31
HLA-DOB-208ENST00000475235 ZNF286BP0CG31 522 aa13.14□□□□□ -0.31
HLA-DOB-208ENST00000475235 RFC2P35250 354 aa13.14□□□□□ -0.31
HLA-DOB-208ENST00000475235 CLCN1P35523 988 aa13.14□□□□□ -0.31
HLA-DOB-208ENST00000475235 AKAP17AQ02040 695 aaKnown RBP13.14□□□□□ -0.31
HLA-DOB-208ENST00000475235 AP3B2Q13367 1082 aa13.14□□□□□ -0.31
HLA-DOB-208ENST00000475235 PTGISQ16647 500 aa13.14□□□□□ -0.31
HLA-DOB-208ENST00000475235 KIAA0753Q2KHM9 967 aa13.14□□□□□ -0.31
HLA-DOB-208ENST00000475235 ZNF697Q5TEC3 545 aa13.14□□□□□ -0.31
HLA-DOB-208ENST00000475235 C16orf59Q7L2K0 433 aa13.14□□□□□ -0.31
HLA-DOB-208ENST00000475235 CAGE1Q8TC20 777 aa13.14□□□□□ -0.31
HLA-DOB-208ENST00000475235 WNT8AQ9H1J5 351 aa13.14□□□□□ -0.31
HLA-DOB-208ENST00000475235 MYH6P13533 1939 aa13.14□□□□□ -0.31
HLA-DOB-208ENST00000475235 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 PRPF3O43395 683 aaKnown RBP13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 SORBS3O60504 671 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 LETM1O95202 739 aaPredicted RBP13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 FGBP02675 491 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 ACRP10323 421 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 SCG2P13521 617 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 SEMA3FQ13275 785 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 MTMR1Q13613 665 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 RASIP1Q5U651 963 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 MCTP2Q6DN12 878 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 TYW1BQ6NUM6 668 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 ZNF365Q70YC5 407 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 CYFIP1Q7L576 1253 aa13.13□□□□□ -0.31
HLA-DOB-208ENST00000475235 ALG1Q9BT22 464 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms