RNA–Protein interactions for RNA: ENST00000474742.1

HDAC9-222, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-222ENST00000474742 ADH4P08319 380 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 PLS3P13797 630 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 PAMP19021 973 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 STAT5AP42229 794 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 ATXN1P54253 815 aaKnown RBP1.6□□□□□ -2.15
HDAC9-222ENST00000474742 GFRA1P56159 465 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 PPP2R2AP63151 447 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 AMPD2Q01433 879 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 RBL2Q08999 1139 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 GRB10Q13322 594 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 RAB33AQ14088 237 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 NCAPHQ15003 741 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 NTRK3Q16288 839 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 ZNF568Q3ZCX4 644 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 TNNI3KQ59H18 835 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 SLC35F1Q5T1Q4 408 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 FOXB2Q5VYV0 432 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 EEF1DP3Q658K8 133 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 SLFN13Q68D06 897 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 DPY19L2P1Q6NXN4 242 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 TRMT10BQ6PF06 316 aaKnown RBP1.6□□□□□ -2.15
HDAC9-222ENST00000474742 NLRP10Q86W26 655 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 VPS37DQ86XT2 251 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 FAM26EQ8N5C1 309 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 TMEM145Q8NBT3 493 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 PLEKHO2Q8TD55 490 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 ZSWIM3Q96MP5 696 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 C8orf37Q96NL8 207 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 ADOQ96SZ5 270 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 APBA2Q99767 749 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 GBP3Q9H0R5 595 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 IKZF4Q9H2S9 585 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 NKX2-4Q9H2Z4 354 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 CDIP1Q9H305 208 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 CD248Q9HCU0 757 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 NGRNQ9NPE2 291 aaKnown RBP1.6□□□□□ -2.15
HDAC9-222ENST00000474742 CYP26B1Q9NR63 512 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 ARHGEF4Q9NR80 690 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 SUGT1Q9Y2Z0 365 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 TESMINQ9Y4I5 508 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 BACE2Q9Y5Z0 518 aa1.6□□□□□ -2.15
HDAC9-222ENST00000474742 ASXL2Q76L83 1435 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 BLACEA4D250 179 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 DIAPH1O60610 1272 aaKnown RBP1.59□□□□□ -2.15
HDAC9-222ENST00000474742 FPR2P25090 351 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 IL13P35225 146 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 ZNF143P52747 638 aaPredicted RBP1.59□□□□□ -2.15
HDAC9-222ENST00000474742 EPHB4P54760 987 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 INHBCP55103 352 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 ITGA1P56199 1179 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 PURAQ00577 322 aaKnown RBP1.59□□□□□ -2.15
HDAC9-222ENST00000474742 PTH1RQ03431 593 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 DPTQ07507 201 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 RASA3Q14644 834 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 TESK1Q15569 626 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 CSRP2Q16527 193 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 FXNQ16595 210 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 LSM12Q3MHD2 195 aaKnown RBP1.59□□□□□ -2.15
HDAC9-222ENST00000474742 SV2CQ496J9 727 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 USP39Q53GS9 565 aaKnown RBP1.59□□□□□ -2.15
HDAC9-222ENST00000474742 RNF207Q6ZRF8 634 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 MILR1Q7Z6M3 343 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 RALYLQ86SE5 291 aaKnown RBP1.59□□□□□ -2.15
HDAC9-222ENST00000474742 IFNL2Q8IZJ0 200 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 RCBTB1Q8NDN9 531 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 Q8TCH9 128 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 OSBP2Q969R2 916 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 PPP1R14AQ96A00 147 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 GNRHR2Q96P88 292 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 PLEKHG4BQ96PX9 1271 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 LRRC37BQ96QE4 947 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 LMF1Q96S06 567 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 WRNIP1Q96S55 665 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 MMP19Q99542 508 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 PTPN18Q99952 460 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 SSBP3Q9BWW4 388 aaPredicted RBP1.59□□□□□ -2.15
HDAC9-222ENST00000474742 TANGO6Q9C0B7 1094 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 KANSL2Q9H9L4 492 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP1.59□□□□□ -2.15
HDAC9-222ENST00000474742 MARCH2Q9P0N8 246 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 PPARGC1AQ9UBK2 798 aaKnown RBP1.59□□□□□ -2.15
HDAC9-222ENST00000474742 ZFR2Q9UPR6 939 aaKnown RBP1.59□□□□□ -2.15
HDAC9-222ENST00000474742 WASF3Q9UPY6 502 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 REXO2Q9Y3B8 237 aaKnown RBP1.59□□□□□ -2.15
HDAC9-222ENST00000474742 NPFFR2Q9Y5X5 522 aa1.59□□□□□ -2.15
HDAC9-222ENST00000474742 PATE3B3GLJ2 98 aa1.58□□□□□ -2.16
HDAC9-222ENST00000474742 C22orf46C9J442 243 aa1.58□□□□□ -2.16
HDAC9-222ENST00000474742 SGSM2O43147 1006 aa1.58□□□□□ -2.16
HDAC9-222ENST00000474742 SNRPB2P08579 225 aaKnown RBP1.58□□□□□ -2.16
HDAC9-222ENST00000474742 C6orf222P0C671 652 aaPredicted RBP1.58□□□□□ -2.16
HDAC9-222ENST00000474742 FAM153BP0C7A2 387 aa1.58□□□□□ -2.16
HDAC9-222ENST00000474742 HOXC12P31275 282 aa1.58□□□□□ -2.16
HDAC9-222ENST00000474742 GTF2F1P35269 517 aaKnown RBP eCLIP1.58□□□□□ -2.16
HDAC9-222ENST00000474742 BCL6P41182 706 aa1.58□□□□□ -2.16
HDAC9-222ENST00000474742 ECI1P42126 302 aa1.58□□□□□ -2.16
HDAC9-222ENST00000474742 NFATC3Q12968 1075 aa1.58□□□□□ -2.16
HDAC9-222ENST00000474742 GNL2Q13823 731 aaKnown RBP1.58□□□□□ -2.16
HDAC9-222ENST00000474742 KCNT2Q6UVM3 1135 aa1.58□□□□□ -2.16
HDAC9-222ENST00000474742 TEX2Q8IWB9 1127 aa1.58□□□□□ -2.16
HDAC9-222ENST00000474742 Q8N1Y9 231 aa1.58□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms