RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 WASF1Q92558 559 aa16.21■□□□□ 0.19
VAMP4-203ENST00000474047 HIPK3Q9H422 1215 aa16.21■□□□□ 0.19
VAMP4-203ENST00000474047 BCAS3Q9H6U6 928 aa16.21■□□□□ 0.19
VAMP4-203ENST00000474047 TRMT13Q9NUP7 481 aaKnown RBP16.21■□□□□ 0.19
VAMP4-203ENST00000474047 ITGB8P26012 769 aa16.2■□□□□ 0.18
VAMP4-203ENST00000474047 ME3Q16798 604 aa16.2■□□□□ 0.18
VAMP4-203ENST00000474047 UTP14CQ5TAP6 766 aaKnown RBP16.2■□□□□ 0.18
VAMP4-203ENST00000474047 RASGRP4Q8TDF6 673 aa16.2■□□□□ 0.18
VAMP4-203ENST00000474047 KAT2BQ92831 832 aa16.2■□□□□ 0.18
VAMP4-203ENST00000474047 SDF4Q9BRK5 362 aa16.2■□□□□ 0.18
VAMP4-203ENST00000474047 KCNH7Q9NS40 1196 aa16.2■□□□□ 0.18
VAMP4-203ENST00000474047 ORC3Q9UBD5 711 aaPredicted RBP16.2■□□□□ 0.18
VAMP4-203ENST00000474047 LIMCH1Q9UPQ0 1083 aa16.2■□□□□ 0.18
VAMP4-203ENST00000474047 ATP9AO75110 1047 aa16.19■□□□□ 0.18
VAMP4-203ENST00000474047 CYP2C18P33260 490 aa16.19■□□□□ 0.18
VAMP4-203ENST00000474047 PTGISQ16647 500 aa16.19■□□□□ 0.18
VAMP4-203ENST00000474047 MFSD5Q6N075 450 aa16.19■□□□□ 0.18
VAMP4-203ENST00000474047 CYP2W1Q8TAV3 490 aa16.19■□□□□ 0.18
VAMP4-203ENST00000474047 AIFM3Q96NN9 605 aa16.19■□□□□ 0.18
VAMP4-203ENST00000474047 GPR20Q99678 358 aa16.19■□□□□ 0.18
VAMP4-203ENST00000474047 PCDHA4Q9UN74 947 aa16.19■□□□□ 0.18
VAMP4-203ENST00000474047 SCN10AQ9Y5Y9 1956 aa16.19■□□□□ 0.18
VAMP4-203ENST00000474047 H3BRB1 525 aa16.19■□□□□ 0.18
VAMP4-203ENST00000474047 F2P00734 622 aa16.19■□□□□ 0.18
VAMP4-203ENST00000474047 LGALS2P05162 132 aa16.19■□□□□ 0.18
VAMP4-203ENST00000474047 CYP2C9P11712 490 aa16.19■□□□□ 0.18
VAMP4-203ENST00000474047 KCNA2P16389 499 aa16.19■□□□□ 0.18
VAMP4-203ENST00000474047 GALNT17Q6IS24 598 aa16.19■□□□□ 0.18
VAMP4-203ENST00000474047 PLA2G4DQ86XP0 818 aa16.19■□□□□ 0.18
VAMP4-203ENST00000474047 BLIDQ8IZY5 108 aa16.19■□□□□ 0.18
VAMP4-203ENST00000474047 FAM177A1Q8N128 213 aaPredicted RBP16.19■□□□□ 0.18
VAMP4-203ENST00000474047 RETREG2Q8NC44 543 aa16.19■□□□□ 0.18
VAMP4-203ENST00000474047 GTF3C6Q969F1 213 aa16.19■□□□□ 0.18
VAMP4-203ENST00000474047 TUT1Q9H6E5 874 aaKnown RBP16.19■□□□□ 0.18
VAMP4-203ENST00000474047 HDAC6Q9UBN7 1215 aa16.19■□□□□ 0.18
VAMP4-203ENST00000474047 ZNF215Q9UL58 517 aaPredicted RBP16.19■□□□□ 0.18
VAMP4-203ENST00000474047 DOCK5Q9H7D0 1870 aa16.18■□□□□ 0.18
VAMP4-203ENST00000474047 TRIOBPQ9H2D6 2365 aa16.18■□□□□ 0.18
VAMP4-203ENST00000474047 STK36Q9NRP7 1315 aa16.18■□□□□ 0.18
VAMP4-203ENST00000474047 ADAMTS3O15072 1205 aa16.18■□□□□ 0.18
VAMP4-203ENST00000474047 HOXD8P13378 290 aaPredicted RBP16.18■□□□□ 0.18
VAMP4-203ENST00000474047 PPIGQ13427 754 aaKnown RBP eCLIP16.18■□□□□ 0.18
VAMP4-203ENST00000474047 SEPT1Q8WYJ6 367 aa16.18■□□□□ 0.18
VAMP4-203ENST00000474047 JPH1Q9HDC5 661 aaPredicted RBP16.18■□□□□ 0.18
VAMP4-203ENST00000474047 GTF3C3Q9Y5Q9 886 aa16.18■□□□□ 0.18
VAMP4-203ENST00000474047 LTBP2Q14767 1821 aa16.18■□□□□ 0.18
VAMP4-203ENST00000474047 MEIS1O00470 390 aa16.17■□□□□ 0.18
VAMP4-203ENST00000474047 DTNBO60941 627 aa16.17■□□□□ 0.18
VAMP4-203ENST00000474047 LARGE1O95461 756 aa16.17■□□□□ 0.18
VAMP4-203ENST00000474047 CYP3A4P08684 503 aa16.17■□□□□ 0.18
VAMP4-203ENST00000474047 ARP10275 920 aa16.17■□□□□ 0.18
VAMP4-203ENST00000474047 TCF7P36402 384 aaPredicted RBP16.17■□□□□ 0.18
VAMP4-203ENST00000474047 RBM25P49756 843 aaKnown RBP16.17■□□□□ 0.18
VAMP4-203ENST00000474047 CCL23P55773 120 aa16.17■□□□□ 0.18
VAMP4-203ENST00000474047 BFSP2Q13515 415 aa16.17■□□□□ 0.18
VAMP4-203ENST00000474047 NIPA1Q7RTP0 329 aa16.17■□□□□ 0.18
VAMP4-203ENST00000474047 SESTD1Q86VW0 696 aa16.17■□□□□ 0.18
VAMP4-203ENST00000474047 CCDC155Q8N6L0 562 aa16.17■□□□□ 0.18
VAMP4-203ENST00000474047 GLG1Q92896 1179 aa16.17■□□□□ 0.18
VAMP4-203ENST00000474047 C16orf70Q9BSU1 422 aa16.17■□□□□ 0.18
VAMP4-203ENST00000474047 NOC4LQ9BVI4 516 aaKnown RBP16.17■□□□□ 0.18
VAMP4-203ENST00000474047 AGO4Q9HCK5 861 aaKnown RBP16.17■□□□□ 0.18
VAMP4-203ENST00000474047 SLC9A2Q9UBY0 812 aa16.17■□□□□ 0.18
VAMP4-203ENST00000474047 TCEAL9Q9UHQ7 104 aa16.17■□□□□ 0.18
VAMP4-203ENST00000474047 KCNJ14Q9UNX9 436 aa16.17■□□□□ 0.18
VAMP4-203ENST00000474047 HAS3O00219 553 aa16.16■□□□□ 0.18
VAMP4-203ENST00000474047 CTDNEP1O95476 244 aa16.16■□□□□ 0.18
VAMP4-203ENST00000474047 CSF2RAP15509 400 aa16.16■□□□□ 0.18
VAMP4-203ENST00000474047 GDF6Q6KF10 455 aaPredicted RBP16.16■□□□□ 0.18
VAMP4-203ENST00000474047 ZSCAN31Q96LW9 406 aaPredicted RBP16.16■□□□□ 0.18
VAMP4-203ENST00000474047 GTF2IRD1Q9UHL9 959 aa16.16■□□□□ 0.18
VAMP4-203ENST00000474047 FAM86B1E9PN63 330 aa16.16■□□□□ 0.18
VAMP4-203ENST00000474047 FAM86B2P0C5J1 330 aa16.16■□□□□ 0.18
VAMP4-203ENST00000474047 SETQ01105 290 aaPredicted RBP16.16■□□□□ 0.18
VAMP4-203ENST00000474047 TRIM29Q14134 588 aa16.16■□□□□ 0.18
VAMP4-203ENST00000474047 RABEP1Q15276 862 aa16.16■□□□□ 0.18
VAMP4-203ENST00000474047 SHHQ15465 462 aa16.16■□□□□ 0.18
VAMP4-203ENST00000474047 PRR16Q569H4 304 aa16.16■□□□□ 0.18
VAMP4-203ENST00000474047 DAGLBQ8NCG7 672 aa16.16■□□□□ 0.18
VAMP4-203ENST00000474047 ZNF577Q9BSK1 485 aa16.16■□□□□ 0.18
VAMP4-203ENST00000474047 AZI2Q9H6S1 392 aa16.16■□□□□ 0.18
VAMP4-203ENST00000474047 BRMS1Q9HCU9 246 aa16.16■□□□□ 0.18
VAMP4-203ENST00000474047 NFASCO94856 1347 aa16.15■□□□□ 0.18
VAMP4-203ENST00000474047 CCDC194A0A1B0GVG4 234 aa16.15■□□□□ 0.18
VAMP4-203ENST00000474047 C17orf102A2RUQ5 167 aa16.15■□□□□ 0.18
VAMP4-203ENST00000474047 DDX39AO00148 427 aaKnown RBP16.15■□□□□ 0.18
VAMP4-203ENST00000474047 ST18O60284 1047 aa16.15■□□□□ 0.18
VAMP4-203ENST00000474047 FXR1P51114 621 aaKnown RBP eCLIP16.15■□□□□ 0.18
VAMP4-203ENST00000474047 USP11P51784 963 aa16.15■□□□□ 0.18
VAMP4-203ENST00000474047 KRT25Q7Z3Z0 450 aa16.15■□□□□ 0.18
VAMP4-203ENST00000474047 TRIM50Q86XT4 487 aa16.15■□□□□ 0.18
VAMP4-203ENST00000474047 RPUSD2Q8IZ73 545 aaKnown RBP16.15■□□□□ 0.18
VAMP4-203ENST00000474047 TBCKQ8TEA7 893 aa16.15■□□□□ 0.18
VAMP4-203ENST00000474047 RNPC3Q96LT9 517 aaKnown RBP16.15■□□□□ 0.18
VAMP4-203ENST00000474047 UIMC1Q96RL1 719 aa16.15■□□□□ 0.18
VAMP4-203ENST00000474047 KIF2CQ99661 725 aa16.15■□□□□ 0.18
VAMP4-203ENST00000474047 SMARCAD1Q9H4L7 1026 aa16.15■□□□□ 0.18
VAMP4-203ENST00000474047 UMODL1Q5DID0 1318 aa16.15■□□□□ 0.18
VAMP4-203ENST00000474047 GSTTP1A0A1W2PQM5 241 aa16.14■□□□□ 0.17
VAMP4-203ENST00000474047 IPO5O00410 1097 aaKnown RBP16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms