RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 C15orf41Q9Y2V0 281 aa5.9□□□□□ -1.47
SYNE1-220ENST00000471834 RDXP35241 583 aaKnown RBP5.89□□□□□ -1.47
SYNE1-220ENST00000471834 GTF2A1P52655 376 aaPredicted RBP5.89□□□□□ -1.47
SYNE1-220ENST00000471834 PMS1P54277 932 aaKnown RBP5.89□□□□□ -1.47
SYNE1-220ENST00000471834 GUCY1B3Q02153 619 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 ADCY2Q08462 1091 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 CCDC181Q5TID7 509 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 SYMPKQ92797 1274 aaKnown RBP5.89□□□□□ -1.47
SYNE1-220ENST00000471834 SIX2Q9NPC8 291 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 SUCLA2Q9P2R7 463 aaPredicted RBP5.89□□□□□ -1.47
SYNE1-220ENST00000471834 VGLL3A8MV65 326 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 HSPA6P17066 643 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 CDK18Q07002 472 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 KLRC3Q07444 240 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 EZH2Q15910 746 aaKnown RBP5.89□□□□□ -1.47
SYNE1-220ENST00000471834 TMC3Q7Z5M5 1100 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 SDCCAG8Q86SQ7 713 aaPredicted RBP5.89□□□□□ -1.47
SYNE1-220ENST00000471834 GALNT15Q8N3T1 639 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 LRRC45Q96CN5 670 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 SLC40A1Q9NP59 571 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 FETUBQ9UGM5 382 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 DIS3Q9Y2L1 958 aaKnown RBP5.89□□□□□ -1.47
SYNE1-220ENST00000471834 IGKV6D-41A0A0C4DH26 115 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 MUTP22033 750 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 CCT2P78371 535 aaKnown RBP5.89□□□□□ -1.47
SYNE1-220ENST00000471834 MCM6Q14566 821 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 MAN2A1Q16706 1144 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 ZDHHC24Q6UX98 284 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 ZNF276Q8N554 614 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 DRC1Q96MC2 740 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 PNMA5Q96PV4 448 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 PCDHA6Q9UN73 950 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 ROBO1Q9Y6N7 1651 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 FAM205CA6NFA0 338 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 POLR3GO15318 223 aaPredicted RBP5.89□□□□□ -1.47
SYNE1-220ENST00000471834 TATP17735 454 aaPredicted RBP5.89□□□□□ -1.47
SYNE1-220ENST00000471834 NR1D1P20393 614 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 GBP1P32455 592 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 STK4Q13043 487 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 PPFIBP1Q86W92 1011 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 MKL1Q969V6 931 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 RNPC3Q96LT9 517 aaKnown RBP5.89□□□□□ -1.47
SYNE1-220ENST00000471834 DMAC2Q9NW81 257 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 ATP6V0A2Q9Y487 856 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 ZBED4O75132 1171 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 JAM2P57087 298 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 KCNMA1Q12791 1236 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 NLRP10Q86W26 655 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 ZNF398Q8TD17 642 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 SLC4A9Q96Q91 983 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 DDX43Q9NXZ2 648 aaKnown RBP5.89□□□□□ -1.47
SYNE1-220ENST00000471834 TNKSO95271 1327 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 POLR2DO15514 142 aaKnown RBP5.89□□□□□ -1.47
SYNE1-220ENST00000471834 SNX3O60493 162 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 POLR3DP05423 398 aaPredicted RBP5.89□□□□□ -1.47
SYNE1-220ENST00000471834 PRCPP42785 496 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 CLK2P49760 499 aaKnown RBP5.89□□□□□ -1.47
SYNE1-220ENST00000471834 RASGRF1Q13972 1273 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 ZBTB33Q86T24 672 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 TRMT44Q8IYL2 757 aaKnown RBP5.89□□□□□ -1.47
SYNE1-220ENST00000471834 KIAA0895Q8NCT3 520 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 SECISBP2LQ93073 1101 aaKnown RBP5.89□□□□□ -1.47
SYNE1-220ENST00000471834 DNAJC5Q9H3Z4 198 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 VEZTQ9HBM0 779 aa5.89□□□□□ -1.47
SYNE1-220ENST00000471834 RBM12Q9NTZ6 932 aaKnown RBP5.89□□□□□ -1.47
SYNE1-220ENST00000471834 PCDH11YQ9BZA8 1340 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 NEFHP12036 1026 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 NCALDP61601 193 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 ELF3P78545 371 aaPredicted RBP5.88□□□□□ -1.47
SYNE1-220ENST00000471834 SEPT7Q16181 437 aaKnown RBP5.88□□□□□ -1.47
SYNE1-220ENST00000471834 GRHL1Q9NZI5 618 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 CEP72Q9P209 647 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 SWAP70Q9UH65 585 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 AP1G1O43747 822 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 MARCKSP29966 332 aaPredicted RBP5.88□□□□□ -1.47
SYNE1-220ENST00000471834 IL6STP40189 918 aaPredicted RBP5.88□□□□□ -1.47
SYNE1-220ENST00000471834 HSP90AB3PQ58FF7 597 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 NCAPH2Q6IBW4 605 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 ZNF483Q8TF39 744 aaPredicted RBP5.88□□□□□ -1.47
SYNE1-220ENST00000471834 TUBGCP2Q9BSJ2 902 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 KCTD10Q9H3F6 313 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 ZDHHC7Q9NXF8 308 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 PCYOX1Q9UHG3 505 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 SART1O43290 800 aaKnown RBP5.88□□□□□ -1.47
SYNE1-220ENST00000471834 DTNBO60941 627 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 CALML3P27482 149 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 PEX5P50542 639 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 MKRN3Q13064 507 aaKnown RBP5.88□□□□□ -1.47
SYNE1-220ENST00000471834 CCDC57Q2TAC2 916 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 TDRPQ86YL5 185 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 SLC9A9Q8IVB4 645 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 SNED1Q8TER0 1413 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 LRRC59Q96AG4 307 aaKnown RBP5.88□□□□□ -1.47
SYNE1-220ENST00000471834 MYD88Q99836 296 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 MKNK1Q9BUB5 465 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 POLR3CQ9BUI4 534 aaPredicted RBP5.88□□□□□ -1.47
SYNE1-220ENST00000471834 PABPC3Q9H361 631 aaKnown RBP5.88□□□□□ -1.47
SYNE1-220ENST00000471834 DNAJB4Q9UDY4 337 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 TRIM64BA6NI03 449 aa5.88□□□□□ -1.47
SYNE1-220ENST00000471834 N4BP3O15049 544 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms