RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 TMTC3Q6ZXV5 915 aa16.53■□□□□ 0.24
SNRNP40-203ENST00000463988 CYFIP1Q7L576 1253 aa16.53■□□□□ 0.24
SNRNP40-203ENST00000463988 NLRX1Q86UT6 975 aa16.53■□□□□ 0.24
SNRNP40-203ENST00000463988 TEX2Q8IWB9 1127 aa16.53■□□□□ 0.24
SNRNP40-203ENST00000463988 GIMAP8Q8ND71 665 aaPredicted RBP16.53■□□□□ 0.24
SNRNP40-203ENST00000463988 GPR20Q99678 358 aa16.53■□□□□ 0.24
SNRNP40-203ENST00000463988 BCAS3Q9H6U6 928 aa16.53■□□□□ 0.24
SNRNP40-203ENST00000463988 RTEL1Q9NZ71 1219 aa16.53■□□□□ 0.24
SNRNP40-203ENST00000463988 EMSYQ7Z589 1322 aa16.52■□□□□ 0.24
SNRNP40-203ENST00000463988 C17orf102A2RUQ5 167 aa16.52■□□□□ 0.24
SNRNP40-203ENST00000463988 RXRAP19793 462 aa16.52■□□□□ 0.24
SNRNP40-203ENST00000463988 HIC1Q14526 733 aa16.52■□□□□ 0.24
SNRNP40-203ENST00000463988 TJAP1Q5JTD0 557 aa16.52■□□□□ 0.24
SNRNP40-203ENST00000463988 ZNF618Q5T7W0 954 aa16.52■□□□□ 0.24
SNRNP40-203ENST00000463988 SYNE3Q6ZMZ3 975 aa16.52■□□□□ 0.24
SNRNP40-203ENST00000463988 WNT8BQ93098 351 aa16.52■□□□□ 0.24
SNRNP40-203ENST00000463988 GPRASP2Q96D09 838 aa16.52■□□□□ 0.24
SNRNP40-203ENST00000463988 CDHR1Q96JP9 859 aa16.52■□□□□ 0.24
SNRNP40-203ENST00000463988 NCOR1O75376 2440 aa16.52■□□□□ 0.24
SNRNP40-203ENST00000463988 CAND2O75155 1236 aa16.51■□□□□ 0.23
SNRNP40-203ENST00000463988 SMIM10L2AP0DMW4 78 aa16.51■□□□□ 0.23
SNRNP40-203ENST00000463988 SMIM10L2BP0DMW5 78 aa16.51■□□□□ 0.23
SNRNP40-203ENST00000463988 GNAT1P11488 350 aa16.51■□□□□ 0.23
SNRNP40-203ENST00000463988 EXOSC10Q01780 885 aaKnown RBP16.51■□□□□ 0.23
SNRNP40-203ENST00000463988 TAP1Q03518 808 aa16.51■□□□□ 0.23
SNRNP40-203ENST00000463988 CMTR1Q8N1G2 835 aaKnown RBP16.51■□□□□ 0.23
SNRNP40-203ENST00000463988 ATXN2LQ8WWM7 1075 aaKnown RBP16.51■□□□□ 0.23
SNRNP40-203ENST00000463988 ATP6V0A1Q93050 837 aa16.51■□□□□ 0.23
SNRNP40-203ENST00000463988 NEK1Q96PY6 1258 aa16.51■□□□□ 0.23
SNRNP40-203ENST00000463988 LRRC2Q9BYS8 371 aa16.51■□□□□ 0.23
SNRNP40-203ENST00000463988 RNPEPQ9H4A4 650 aa16.51■□□□□ 0.23
SNRNP40-203ENST00000463988 RBM28Q9NW13 759 aaKnown RBP16.51■□□□□ 0.23
SNRNP40-203ENST00000463988 ZNF215Q9UL58 517 aaPredicted RBP16.51■□□□□ 0.23
SNRNP40-203ENST00000463988 SPTBN5Q9NRC6 3674 aaKnown RBP16.5■□□□□ 0.23
SNRNP40-203ENST00000463988 RSPH10B2B2RC85 870 aa16.5■□□□□ 0.23
SNRNP40-203ENST00000463988 TLL1O43897 1013 aa16.5■□□□□ 0.23
SNRNP40-203ENST00000463988 LGR5O75473 907 aa16.5■□□□□ 0.23
SNRNP40-203ENST00000463988 RSPH10BP0C881 870 aa16.5■□□□□ 0.23
SNRNP40-203ENST00000463988 IKBKEQ14164 716 aa16.5■□□□□ 0.23
SNRNP40-203ENST00000463988 KRT32Q14532 448 aa16.5■□□□□ 0.23
SNRNP40-203ENST00000463988 MBTPS1Q14703 1052 aa16.5■□□□□ 0.23
SNRNP40-203ENST00000463988 APOA5Q6Q788 366 aa16.5■□□□□ 0.23
SNRNP40-203ENST00000463988 DHX32Q7L7V1 743 aaKnown RBP16.5■□□□□ 0.23
SNRNP40-203ENST00000463988 MICU3Q86XE3 530 aa16.5■□□□□ 0.23
SNRNP40-203ENST00000463988 PPM1EQ8WY54 764 aa16.5■□□□□ 0.23
SNRNP40-203ENST00000463988 THEGQ9P2T0 379 aa16.5■□□□□ 0.23
SNRNP40-203ENST00000463988 SPDYE3A6NKU9 549 aa16.49■□□□□ 0.23
SNRNP40-203ENST00000463988 MAFGO15525 162 aa16.49■□□□□ 0.23
SNRNP40-203ENST00000463988 CDC45O75419 566 aa16.49■□□□□ 0.23
SNRNP40-203ENST00000463988 THPOP40225 353 aa16.49■□□□□ 0.23
SNRNP40-203ENST00000463988 CCDC82Q8N4S0 544 aa16.49■□□□□ 0.23
SNRNP40-203ENST00000463988 TSPYL2Q9H2G4 693 aaPredicted RBP16.49■□□□□ 0.23
SNRNP40-203ENST00000463988 UBIAD1Q9Y5Z9 338 aa16.49■□□□□ 0.23
SNRNP40-203ENST00000463988 PRRC2BQ5JSZ5 2229 aaKnown RBP16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 BDP1A6H8Y1 2624 aa16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 hCG_1642624A0A1W2PR95 340 aa16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 TREHO43280 583 aa16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 GTPBP6O43824 516 aaPredicted RBP16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 GJB5O95377 273 aa16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 HMGB1P09429 215 aaKnown RBP16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 KCNA2P16389 499 aa16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 ITGB5P18084 799 aa16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 RCAN1P53805 252 aa16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 ADAM17P78536 824 aa16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 CCDC85BQ15834 202 aaPredicted RBP16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 TCTN1Q2MV58 587 aa16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 PPP1R18Q6NYC8 613 aa16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 HEATR3Q7Z4Q2 680 aa16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 SKAP1Q86WV1 359 aa16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 RAB11FIP4Q86YS3 637 aa16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 RASEFQ8IZ41 740 aa16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 RAD9AQ99638 391 aa16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 ZBED2Q9BTP6 218 aa16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 EHMT1Q9H9B1 1298 aa16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 PRDM6Q9NQX0 595 aa16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 PCDHA6Q9UN73 950 aa16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 PCDHA8Q9Y5H6 950 aa16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 MTCH2Q9Y6C9 303 aa16.48■□□□□ 0.23
SNRNP40-203ENST00000463988 CNTNAP5Q8WYK1 1306 aa16.47■□□□□ 0.23
SNRNP40-203ENST00000463988 hCG_1984214I3L0E3 225 aa16.47■□□□□ 0.23
SNRNP40-203ENST00000463988 ZBTB43O43298 467 aa16.47■□□□□ 0.23
SNRNP40-203ENST00000463988 ATP9AO75110 1047 aa16.47■□□□□ 0.23
SNRNP40-203ENST00000463988 ARHGEF15O94989 841 aa16.47■□□□□ 0.23
SNRNP40-203ENST00000463988 DEFB103AP81534 67 aa16.47■□□□□ 0.23
SNRNP40-203ENST00000463988 MRPS5P82675 430 aaKnown RBP16.47■□□□□ 0.23
SNRNP40-203ENST00000463988 FUT2Q10981 343 aa16.47■□□□□ 0.23
SNRNP40-203ENST00000463988 MKRN4PQ13434 485 aaPredicted RBP16.47■□□□□ 0.23
SNRNP40-203ENST00000463988 UBE2SQ16763 222 aa16.47■□□□□ 0.23
SNRNP40-203ENST00000463988 RTN1Q16799 776 aa16.47■□□□□ 0.23
SNRNP40-203ENST00000463988 PLEKHG4Q58EX7 1191 aa16.47■□□□□ 0.23
SNRNP40-203ENST00000463988 TRIM50Q86XT4 487 aa16.47■□□□□ 0.23
SNRNP40-203ENST00000463988 ZNF713Q8N859 430 aaPredicted RBP16.47■□□□□ 0.23
SNRNP40-203ENST00000463988 ARNTL2Q8WYA1 636 aa16.47■□□□□ 0.23
SNRNP40-203ENST00000463988 SEPT1Q8WYJ6 367 aa16.47■□□□□ 0.23
SNRNP40-203ENST00000463988 ASB2Q96Q27 587 aa16.47■□□□□ 0.23
SNRNP40-203ENST00000463988 JADE2Q9NQC1 790 aa16.47■□□□□ 0.23
SNRNP40-203ENST00000463988 SETD4Q9NVD3 440 aa16.47■□□□□ 0.23
SNRNP40-203ENST00000463988 BRPF3Q9ULD4 1205 aa16.47■□□□□ 0.23
SNRNP40-203ENST00000463988 NRCAMQ92823 1304 aa16.46■□□□□ 0.23
SNRNP40-203ENST00000463988 EPOPA6NHQ4 379 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms