RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 OR2W6PQ8NHA6 318 aa5.87□□□□□ -1.47
VPS41-210ENST00000462429 LIN37Q96GY3 246 aaPredicted RBP5.87□□□□□ -1.47
VPS41-210ENST00000462429 BRINP2Q9C0B6 783 aa5.87□□□□□ -1.47
VPS41-210ENST00000462429 EPB41L4BQ9H329 900 aa5.87□□□□□ -1.47
VPS41-210ENST00000462429 ZNF552Q9H707 407 aaPredicted RBP5.87□□□□□ -1.47
VPS41-210ENST00000462429 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.87□□□□□ -1.47
VPS41-210ENST00000462429 B4GALT6Q9UBX8 382 aa5.87□□□□□ -1.47
VPS41-210ENST00000462429 ZKSCAN5Q9Y2L8 839 aa5.87□□□□□ -1.47
VPS41-210ENST00000462429 CARMIL2Q6F5E8 1435 aa5.87□□□□□ -1.47
VPS41-210ENST00000462429 SLC27A2O14975 620 aa5.86□□□□□ -1.47
VPS41-210ENST00000462429 AMY2AP04746 511 aa5.86□□□□□ -1.47
VPS41-210ENST00000462429 AMY2BP19961 511 aa5.86□□□□□ -1.47
VPS41-210ENST00000462429 SCNN1BP51168 640 aa5.86□□□□□ -1.47
VPS41-210ENST00000462429 MECP2P51608 486 aaKnown RBP5.86□□□□□ -1.47
VPS41-210ENST00000462429 DHCR24Q15392 516 aa5.86□□□□□ -1.47
VPS41-210ENST00000462429 HHIPL2Q6UWX4 724 aa5.86□□□□□ -1.47
VPS41-210ENST00000462429 KCTD1Q719H9 257 aa5.86□□□□□ -1.47
VPS41-210ENST00000462429 TMC6Q7Z403 805 aa5.86□□□□□ -1.47
VPS41-210ENST00000462429 PTRH1Q86Y79 214 aaKnown RBP5.86□□□□□ -1.47
VPS41-210ENST00000462429 UBR7Q8N806 425 aa5.86□□□□□ -1.47
VPS41-210ENST00000462429 DIRC2Q96SL1 478 aa5.86□□□□□ -1.47
VPS41-210ENST00000462429 BOCQ9BWV1 1114 aa5.86□□□□□ -1.47
VPS41-210ENST00000462429 NSUN3Q9H649 340 aaKnown RBP5.86□□□□□ -1.47
VPS41-210ENST00000462429 SMURF1Q9HCE7 757 aa5.86□□□□□ -1.47
VPS41-210ENST00000462429 ASH2LQ9UBL3 628 aa5.86□□□□□ -1.47
VPS41-210ENST00000462429 SRPK3Q9UPE1 567 aa5.86□□□□□ -1.47
VPS41-210ENST00000462429 COL4A3BPQ9Y5P4 624 aa5.86□□□□□ -1.47
VPS41-210ENST00000462429 ATP23Q9Y6H3 246 aa5.86□□□□□ -1.47
VPS41-210ENST00000462429 TCRBV5S2A0A599 114 aa5.85□□□□□ -1.47
VPS41-210ENST00000462429 TCRBV5S4A2TA0A5A2 114 aa5.85□□□□□ -1.47
VPS41-210ENST00000462429 PTPDC1A2A3K4 754 aa5.85□□□□□ -1.47
VPS41-210ENST00000462429 TRAF5O00463 557 aa5.85□□□□□ -1.47
VPS41-210ENST00000462429 MAN2B1O00754 1011 aa5.85□□□□□ -1.47
VPS41-210ENST00000462429 PEX10O60683 326 aa5.85□□□□□ -1.47
VPS41-210ENST00000462429 HIP1RO75146 1068 aa5.85□□□□□ -1.47
VPS41-210ENST00000462429 F2P00734 622 aa5.85□□□□□ -1.47
VPS41-210ENST00000462429 VIPR1P32241 457 aa5.85□□□□□ -1.47
VPS41-210ENST00000462429 GJA4P35212 333 aa5.85□□□□□ -1.47
VPS41-210ENST00000462429 NFKB2Q00653 900 aa5.85□□□□□ -1.47
VPS41-210ENST00000462429 TUSC3Q13454 348 aa5.85□□□□□ -1.47
VPS41-210ENST00000462429 SEPT7Q16181 437 aaKnown RBP5.85□□□□□ -1.47
VPS41-210ENST00000462429 OTOP1Q7RTM1 612 aa5.85□□□□□ -1.47
VPS41-210ENST00000462429 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.85□□□□□ -1.47
VPS41-210ENST00000462429 ALG3Q92685 438 aa5.85□□□□□ -1.47
VPS41-210ENST00000462429 PUS7Q96PZ0 661 aaKnown RBP5.85□□□□□ -1.47
VPS41-210ENST00000462429 YIPF4Q9BSR8 244 aa5.85□□□□□ -1.47
VPS41-210ENST00000462429 CD244Q9BZW8 370 aa5.85□□□□□ -1.47
VPS41-210ENST00000462429 DCP1AQ9NPI6 582 aaPredicted RBP5.85□□□□□ -1.47
VPS41-210ENST00000462429 SIRT5Q9NXA8 310 aa5.85□□□□□ -1.47
VPS41-210ENST00000462429 LRRC10BA6NIK2 292 aa5.84□□□□□ -1.47
VPS41-210ENST00000462429 CLASP2O75122 1294 aaKnown RBP5.84□□□□□ -1.47
VPS41-210ENST00000462429 EPHA5P54756 1037 aa5.84□□□□□ -1.47
VPS41-210ENST00000462429 SRSF3P84103 164 aaKnown RBP5.84□□□□□ -1.47
VPS41-210ENST00000462429 IRF9Q00978 393 aa5.84□□□□□ -1.47
VPS41-210ENST00000462429 OCRLQ01968 901 aa5.84□□□□□ -1.47
VPS41-210ENST00000462429 DSG1Q02413 1049 aa5.84□□□□□ -1.47
VPS41-210ENST00000462429 MLANAQ16655 118 aa5.84□□□□□ -1.47
VPS41-210ENST00000462429 PRR23BQ6ZRT6 265 aa5.84□□□□□ -1.47
VPS41-210ENST00000462429 AMIGO3Q86WK7 504 aa5.84□□□□□ -1.47
VPS41-210ENST00000462429 NXPE1Q8N323 547 aa5.84□□□□□ -1.47
VPS41-210ENST00000462429 AFAP1L2Q8N4X5 818 aa5.84□□□□□ -1.47
VPS41-210ENST00000462429 TTLL11Q8NHH1 800 aa5.84□□□□□ -1.47
VPS41-210ENST00000462429 SH3RF2Q8TEC5 729 aa5.84□□□□□ -1.47
VPS41-210ENST00000462429 USP7Q93009 1102 aa5.84□□□□□ -1.47
VPS41-210ENST00000462429 PDGFDQ9GZP0 370 aaPredicted RBP5.84□□□□□ -1.47
VPS41-210ENST00000462429 PCDH12Q9NPG4 1184 aa5.84□□□□□ -1.47
VPS41-210ENST00000462429 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.84□□□□□ -1.47
VPS41-210ENST00000462429 MCM8Q9UJA3 840 aa5.84□□□□□ -1.47
VPS41-210ENST00000462429 NOP58Q9Y2X3 529 aaKnown RBP5.84□□□□□ -1.47
VPS41-210ENST00000462429 HCFC2Q9Y5Z7 792 aa5.84□□□□□ -1.47
VPS41-210ENST00000462429 hCG_2014768A0A024R1R8 64 aa5.83□□□□□ -1.48
VPS41-210ENST00000462429 ZNF891A8MT65 544 aaPredicted RBP5.83□□□□□ -1.48
VPS41-210ENST00000462429 H7C1D1 291 aa5.83□□□□□ -1.48
VPS41-210ENST00000462429 KCNK3O14649 394 aa5.83□□□□□ -1.48
VPS41-210ENST00000462429 PPM1GO15355 546 aaPredicted RBP5.83□□□□□ -1.48
VPS41-210ENST00000462429 KRT37O76014 449 aa5.83□□□□□ -1.48
VPS41-210ENST00000462429 IL2P60568 153 aa5.83□□□□□ -1.48
VPS41-210ENST00000462429 ZNF200P98182 395 aaPredicted RBP5.83□□□□□ -1.48
VPS41-210ENST00000462429 STRN3Q13033 797 aa5.83□□□□□ -1.48
VPS41-210ENST00000462429 ZNF174Q15697 407 aa5.83□□□□□ -1.48
VPS41-210ENST00000462429 BTBD8Q5XKL5 378 aa5.83□□□□□ -1.48
VPS41-210ENST00000462429 MCTP1Q6DN14 999 aa5.83□□□□□ -1.48
VPS41-210ENST00000462429 TMEM132EQ6IEE7 984 aa5.83□□□□□ -1.48
VPS41-210ENST00000462429 ETV3LQ6ZN32 361 aa5.83□□□□□ -1.48
VPS41-210ENST00000462429 MIB1Q86YT6 1006 aa5.83□□□□□ -1.48
VPS41-210ENST00000462429 FAM126BQ8IXS8 530 aa5.83□□□□□ -1.48
VPS41-210ENST00000462429 ARRDC4Q8NCT1 418 aa5.83□□□□□ -1.48
VPS41-210ENST00000462429 DDX11Q96FC9 970 aa5.83□□□□□ -1.48
VPS41-210ENST00000462429 GPATCH3Q96I76 525 aa5.83□□□□□ -1.48
VPS41-210ENST00000462429 TTC1Q99614 292 aa5.83□□□□□ -1.48
VPS41-210ENST00000462429 RNF38Q9H0F5 515 aa5.83□□□□□ -1.48
VPS41-210ENST00000462429 IFT22Q9H7X7 185 aa5.83□□□□□ -1.48
VPS41-210ENST00000462429 NGRNQ9NPE2 291 aaKnown RBP5.83□□□□□ -1.48
VPS41-210ENST00000462429 RIC8BQ9NVN3 520 aa5.83□□□□□ -1.48
VPS41-210ENST00000462429 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.83□□□□□ -1.48
VPS41-210ENST00000462429 SCDO00767 359 aa5.82□□□□□ -1.48
VPS41-210ENST00000462429 BRINP1O60477 761 aa5.82□□□□□ -1.48
VPS41-210ENST00000462429 LTFP02788 710 aa5.82□□□□□ -1.48
VPS41-210ENST00000462429 PTPN1P18031 435 aaKnown RBP5.82□□□□□ -1.48
VPS41-210ENST00000462429 ANAPC15P60006 121 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms