RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 ZNF76P36508 570 aa13.5□□□□□ -0.25
VPS52-213ENST00000461743 USP11P51784 963 aa13.5□□□□□ -0.25
VPS52-213ENST00000461743 TLE2Q04725 743 aa13.5□□□□□ -0.25
VPS52-213ENST00000461743 SESTD1Q86VW0 696 aa13.5□□□□□ -0.25
VPS52-213ENST00000461743 CCDC83Q8IWF9 413 aa13.5□□□□□ -0.25
VPS52-213ENST00000461743 FAM126BQ8IXS8 530 aa13.5□□□□□ -0.25
VPS52-213ENST00000461743 VTI1AQ96AJ9 217 aa13.5□□□□□ -0.25
VPS52-213ENST00000461743 AIFM3Q96NN9 605 aa13.5□□□□□ -0.25
VPS52-213ENST00000461743 KCNH7Q9NS40 1196 aa13.5□□□□□ -0.25
VPS52-213ENST00000461743 KIF3AQ9Y496 699 aa13.5□□□□□ -0.25
VPS52-213ENST00000461743 TRIOBPQ9H2D6 2365 aa13.5□□□□□ -0.25
VPS52-213ENST00000461743 IGLV3-22A0A075B6J6 115 aa13.49□□□□□ -0.25
VPS52-213ENST00000461743 PQBP1O60828 265 aaKnown RBP13.49□□□□□ -0.25
VPS52-213ENST00000461743 TRIM29Q14134 588 aa13.49□□□□□ -0.25
VPS52-213ENST00000461743 NONOQ15233 471 aaKnown RBP eCLIP13.49□□□□□ -0.25
VPS52-213ENST00000461743 HSDL1Q3SXM5 330 aa13.49□□□□□ -0.25
VPS52-213ENST00000461743 CYFIP1Q7L576 1253 aa13.49□□□□□ -0.25
VPS52-213ENST00000461743 RASGRP4Q8TDF6 673 aa13.49□□□□□ -0.25
VPS52-213ENST00000461743 NAP1L4Q99733 375 aaKnown RBP13.49□□□□□ -0.25
VPS52-213ENST00000461743 SDF4Q9BRK5 362 aa13.49□□□□□ -0.25
VPS52-213ENST00000461743 JPH1Q9HDC5 661 aaPredicted RBP13.49□□□□□ -0.25
VPS52-213ENST00000461743 TBX21Q9UL17 535 aa13.49□□□□□ -0.25
VPS52-213ENST00000461743 LOXHD1Q8IVV2 1947 aa13.49□□□□□ -0.25
VPS52-213ENST00000461743 MYH15Q9Y2K3 1946 aa13.49□□□□□ -0.25
VPS52-213ENST00000461743 GRIN2DO15399 1336 aa13.48□□□□□ -0.25
VPS52-213ENST00000461743 EMSYQ7Z589 1322 aa13.48□□□□□ -0.25
VPS52-213ENST00000461743 SCN5AQ14524 2016 aa13.48□□□□□ -0.25
VPS52-213ENST00000461743 CCDC194A0A1B0GVG4 234 aa13.48□□□□□ -0.25
VPS52-213ENST00000461743 A0A1W2PPC1 479 aa13.48□□□□□ -0.25
VPS52-213ENST00000461743 FAM86B1E9PN63 330 aa13.48□□□□□ -0.25
VPS52-213ENST00000461743 HAS3O00219 553 aa13.48□□□□□ -0.25
VPS52-213ENST00000461743 KIAA0355O15063 1070 aa13.48□□□□□ -0.25
VPS52-213ENST00000461743 JAK2O60674 1132 aa13.48□□□□□ -0.25
VPS52-213ENST00000461743 CD4P01730 458 aa13.48□□□□□ -0.25
VPS52-213ENST00000461743 MMP1P03956 469 aa13.48□□□□□ -0.25
VPS52-213ENST00000461743 FAM86B2P0C5J1 330 aa13.48□□□□□ -0.25
VPS52-213ENST00000461743 SUPT20HL2P0C7V6 817 aa13.48□□□□□ -0.25
VPS52-213ENST00000461743 KRT2P35908 639 aa13.48□□□□□ -0.25
VPS52-213ENST00000461743 PLA2G4DQ86XP0 818 aa13.48□□□□□ -0.25
VPS52-213ENST00000461743 TBCKQ8TEA7 893 aa13.48□□□□□ -0.25
VPS52-213ENST00000461743 ZFP91Q96JP5 570 aaPredicted RBP13.48□□□□□ -0.25
VPS52-213ENST00000461743 GPR20Q99678 358 aa13.48□□□□□ -0.25
VPS52-213ENST00000461743 AGO4Q9HCK5 861 aaKnown RBP13.48□□□□□ -0.25
VPS52-213ENST00000461743 ZNF215Q9UL58 517 aaPredicted RBP13.48□□□□□ -0.25
VPS52-213ENST00000461743 ARID2Q68CP9 1835 aa13.48□□□□□ -0.25
VPS52-213ENST00000461743 CYP3A7-CYP3A51PA0A087WV96 503 aa13.47□□□□□ -0.25
VPS52-213ENST00000461743 LGALS2P05162 132 aa13.47□□□□□ -0.25
VPS52-213ENST00000461743 ZNF286BP0CG31 522 aa13.47□□□□□ -0.25
VPS52-213ENST00000461743 GCFC2P16383 781 aaKnown RBP13.47□□□□□ -0.25
VPS52-213ENST00000461743 CYP3A7P24462 503 aa13.47□□□□□ -0.25
VPS52-213ENST00000461743 PSEN2P49810 448 aa13.47□□□□□ -0.25
VPS52-213ENST00000461743 FAAP100Q0VG06 881 aa13.47□□□□□ -0.25
VPS52-213ENST00000461743 Q4G0T1 1027 aa13.47□□□□□ -0.25
VPS52-213ENST00000461743 KAT2BQ92831 832 aa13.47□□□□□ -0.25
VPS52-213ENST00000461743 PRDM5Q9NQX1 630 aaPredicted RBP13.47□□□□□ -0.25
VPS52-213ENST00000461743 TBC1D22BQ9NU19 505 aa13.47□□□□□ -0.25
VPS52-213ENST00000461743 SLC9A2Q9UBY0 812 aa13.47□□□□□ -0.25
VPS52-213ENST00000461743 TCEAL9Q9UHQ7 104 aa13.47□□□□□ -0.25
VPS52-213ENST00000461743 ZMYND8Q9ULU4 1186 aaPredicted RBP13.47□□□□□ -0.25
VPS52-213ENST00000461743 KCNJ14Q9UNX9 436 aa13.47□□□□□ -0.25
VPS52-213ENST00000461743 SIP14410 1827 aa13.47□□□□□ -0.25
VPS52-213ENST00000461743 EVPLQ92817 2033 aa13.46□□□□□ -0.25
VPS52-213ENST00000461743 IPO5O00410 1097 aaKnown RBP13.46□□□□□ -0.25
VPS52-213ENST00000461743 ADAMTS3O15072 1205 aa13.46□□□□□ -0.25
VPS52-213ENST00000461743 ATP9AO75110 1047 aa13.46□□□□□ -0.25
VPS52-213ENST00000461743 ARP10275 920 aa13.46□□□□□ -0.25
VPS52-213ENST00000461743 BMP8BP34820 402 aa13.46□□□□□ -0.25
VPS52-213ENST00000461743 PSMC6P62333 389 aa13.46□□□□□ -0.25
VPS52-213ENST00000461743 MFSD10Q14728 455 aa13.46□□□□□ -0.25
VPS52-213ENST00000461743 SAFBQ15424 915 aaKnown RBP eCLIP13.46□□□□□ -0.25
VPS52-213ENST00000461743 NBPF20Q3BBV1 942 aa13.46□□□□□ -0.25
VPS52-213ENST00000461743 KRT40Q6A162 431 aa13.46□□□□□ -0.25
VPS52-213ENST00000461743 NEK8Q86SG6 692 aa13.46□□□□□ -0.25
VPS52-213ENST00000461743 FAM184AQ8NB25 1140 aa13.46□□□□□ -0.25
VPS52-213ENST00000461743 CYP2W1Q8TAV3 490 aa13.46□□□□□ -0.25
VPS52-213ENST00000461743 SEPT1Q8WYJ6 367 aa13.46□□□□□ -0.25
VPS52-213ENST00000461743 TNFRSF25Q93038 417 aa13.46□□□□□ -0.25
VPS52-213ENST00000461743 LENG9Q96B70 501 aa13.46□□□□□ -0.25
VPS52-213ENST00000461743 TMX3Q96JJ7 454 aa13.46□□□□□ -0.25
VPS52-213ENST00000461743 C8orf76Q96K31 380 aa13.46□□□□□ -0.25
VPS52-213ENST00000461743 MBOAT7Q96N66 472 aa13.46□□□□□ -0.25
VPS52-213ENST00000461743 LBHD1Q9BQE6 289 aaPredicted RBP13.46□□□□□ -0.25
VPS52-213ENST00000461743 C16orf70Q9BSU1 422 aa13.46□□□□□ -0.25
VPS52-213ENST00000461743 TMEM39AQ9NV64 488 aa13.46□□□□□ -0.25
VPS52-213ENST00000461743 H3BRB1 525 aa13.45□□□□□ -0.26
VPS52-213ENST00000461743 B4GALT4O60513 344 aa13.45□□□□□ -0.26
VPS52-213ENST00000461743 LGR5O75473 907 aa13.45□□□□□ -0.26
VPS52-213ENST00000461743 CD2BP2O95400 341 aaKnown RBP13.45□□□□□ -0.26
VPS52-213ENST00000461743 HOXC8P31273 242 aa13.45□□□□□ -0.26
VPS52-213ENST00000461743 TCF7P36402 384 aaPredicted RBP13.45□□□□□ -0.26
VPS52-213ENST00000461743 KRT76Q01546 638 aa13.45□□□□□ -0.26
VPS52-213ENST00000461743 ITGB3BPQ13352 177 aaPredicted RBP13.45□□□□□ -0.26
VPS52-213ENST00000461743 KIAA0753Q2KHM9 967 aa13.45□□□□□ -0.26
VPS52-213ENST00000461743 PRR16Q569H4 304 aa13.45□□□□□ -0.26
VPS52-213ENST00000461743 FAM47CQ5HY64 1035 aa13.45□□□□□ -0.26
VPS52-213ENST00000461743 PPP4R3AQ6IN85 833 aa13.45□□□□□ -0.26
VPS52-213ENST00000461743 ZNF746Q6NUN9 644 aaPredicted RBP13.45□□□□□ -0.26
VPS52-213ENST00000461743 SMAP1Q8IYB5 467 aaPredicted RBP13.45□□□□□ -0.26
VPS52-213ENST00000461743 DIS3L2Q8IYB7 885 aaKnown RBP13.45□□□□□ -0.26
VPS52-213ENST00000461743 CCDC155Q8N6L0 562 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms