RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 MYOZ2Q9NPC6 264 aa9.17□□□□□ -0.94
USP54-208ENST00000461520 MYH3P11055 1940 aa9.17□□□□□ -0.94
USP54-208ENST00000461520 ANKRD18BA2A2Z9 1011 aa9.16□□□□□ -0.94
USP54-208ENST00000461520 LRIG2O94898 1065 aa9.16□□□□□ -0.94
USP54-208ENST00000461520 ITGB5P18084 799 aa9.16□□□□□ -0.94
USP54-208ENST00000461520 FUT4P22083 530 aa9.16□□□□□ -0.94
USP54-208ENST00000461520 ETF1P62495 437 aaKnown RBP9.16□□□□□ -0.94
USP54-208ENST00000461520 FGD1P98174 961 aa9.16□□□□□ -0.94
USP54-208ENST00000461520 SLBPQ14493 270 aaKnown RBP eCLIP9.16□□□□□ -0.94
USP54-208ENST00000461520 DACT2Q5SW24 774 aa9.16□□□□□ -0.94
USP54-208ENST00000461520 ANGEL2Q5VTE6 544 aaKnown RBP9.16□□□□□ -0.94
USP54-208ENST00000461520 RGMBQ6NW40 437 aa9.16□□□□□ -0.94
USP54-208ENST00000461520 KRTAP1-3Q8IUG1 177 aa9.16□□□□□ -0.94
USP54-208ENST00000461520 FAM161BQ96MY7 647 aa9.16□□□□□ -0.94
USP54-208ENST00000461520 TNKS2Q9H2K2 1166 aa9.16□□□□□ -0.94
USP54-208ENST00000461520 ADAMTS6Q9UKP5 1117 aa9.16□□□□□ -0.94
USP54-208ENST00000461520 SNCAIPQ9Y6H5 919 aa9.16□□□□□ -0.94
USP54-208ENST00000461520 CACNA1FO60840 1977 aa9.15□□□□□ -0.94
USP54-208ENST00000461520 AKAP11Q9UKA4 1901 aa9.15□□□□□ -0.94
USP54-208ENST00000461520 PSME4Q14997 1843 aa9.15□□□□□ -0.94
USP54-208ENST00000461520 ASTN2O75129 1339 aaPredicted RBP9.15□□□□□ -0.94
USP54-208ENST00000461520 F6X3S4 739 aa9.15□□□□□ -0.94
USP54-208ENST00000461520 RBAK-RBAKDNI3L0D1 243 aa9.15□□□□□ -0.94
USP54-208ENST00000461520 IGF2BP3O00425 579 aaKnown RBP eCLIP9.15□□□□□ -0.94
USP54-208ENST00000461520 SLITRK5O94991 958 aa9.15□□□□□ -0.94
USP54-208ENST00000461520 RPS26P62854 115 aaKnown RBP9.15□□□□□ -0.94
USP54-208ENST00000461520 FKBP1BP68106 108 aa9.15□□□□□ -0.94
USP54-208ENST00000461520 FOXO4P98177 505 aa9.15□□□□□ -0.94
USP54-208ENST00000461520 CHRNDQ07001 517 aa9.15□□□□□ -0.94
USP54-208ENST00000461520 PSMD2Q13200 908 aa9.15□□□□□ -0.94
USP54-208ENST00000461520 IFIT5Q13325 482 aaKnown RBP9.15□□□□□ -0.94
USP54-208ENST00000461520 LCE3BQ5TA77 95 aa9.15□□□□□ -0.94
USP54-208ENST00000461520 CDCA5Q96FF9 252 aa9.15□□□□□ -0.94
USP54-208ENST00000461520 MBNL3Q9NUK0 354 aaKnown RBP9.15□□□□□ -0.94
USP54-208ENST00000461520 TNRC18O15417 2968 aaPredicted RBP9.15□□□□□ -0.95
USP54-208ENST00000461520 ZNF521Q96K83 1311 aa9.14□□□□□ -0.95
USP54-208ENST00000461520 FAM155AB1AL88 458 aaPredicted RBP9.14□□□□□ -0.95
USP54-208ENST00000461520 GRM8O00222 908 aa9.14□□□□□ -0.95
USP54-208ENST00000461520 WNT10BO00744 389 aa9.14□□□□□ -0.95
USP54-208ENST00000461520 ALDH1L1O75891 902 aa9.14□□□□□ -0.95
USP54-208ENST00000461520 RNASE1P07998 156 aaKnown RBP9.14□□□□□ -0.95
USP54-208ENST00000461520 KCNJ4P48050 445 aa9.14□□□□□ -0.95
USP54-208ENST00000461520 LIG3P49916 1009 aa9.14□□□□□ -0.95
USP54-208ENST00000461520 DAB2P98082 770 aa9.14□□□□□ -0.95
USP54-208ENST00000461520 NKPD1Q17RQ9 610 aa9.14□□□□□ -0.95
USP54-208ENST00000461520 TTLL5Q6EMB2 1281 aa9.14□□□□□ -0.95
USP54-208ENST00000461520 AGMOQ6ZNB7 445 aa9.14□□□□□ -0.95
USP54-208ENST00000461520 C15orf52Q6ZUT6 534 aaKnown RBP9.14□□□□□ -0.95
USP54-208ENST00000461520 SPACA3Q8IXA5 215 aa9.14□□□□□ -0.95
USP54-208ENST00000461520 PI4K2BQ8TCG2 481 aa9.14□□□□□ -0.95
USP54-208ENST00000461520 FOXQ1Q9C009 403 aa9.14□□□□□ -0.95
USP54-208ENST00000461520 SPEF2Q9C093 1822 aa9.13□□□□□ -0.95
USP54-208ENST00000461520 GFRA2O00451 464 aa9.13□□□□□ -0.95
USP54-208ENST00000461520 JUNBP17275 347 aaPredicted RBP9.13□□□□□ -0.95
USP54-208ENST00000461520 KLRK1P26718 216 aa9.13□□□□□ -0.95
USP54-208ENST00000461520 GRK4P32298 578 aa9.13□□□□□ -0.95
USP54-208ENST00000461520 KIF23Q02241 960 aaPredicted RBP9.13□□□□□ -0.95
USP54-208ENST00000461520 CCDC57Q2TAC2 916 aa9.13□□□□□ -0.95
USP54-208ENST00000461520 NBPF9Q3BBW0 867 aa9.13□□□□□ -0.95
USP54-208ENST00000461520 LMBR1LQ6UX01 489 aa9.13□□□□□ -0.95
USP54-208ENST00000461520 RIN3Q8TB24 985 aa9.13□□□□□ -0.95
USP54-208ENST00000461520 ASIC4Q96FT7 647 aa9.13□□□□□ -0.95
USP54-208ENST00000461520 MIPEPQ99797 713 aa9.13□□□□□ -0.95
USP54-208ENST00000461520 MXD3Q9BW11 206 aa9.13□□□□□ -0.95
USP54-208ENST00000461520 CD209Q9NNX6 404 aa9.13□□□□□ -0.95
USP54-208ENST00000461520 PRDM5Q9NQX1 630 aaPredicted RBP9.13□□□□□ -0.95
USP54-208ENST00000461520 SAGE1Q9NXZ1 904 aa9.13□□□□□ -0.95
USP54-208ENST00000461520 C9orf78Q9NZ63 289 aaPredicted RBP9.13□□□□□ -0.95
USP54-208ENST00000461520 HDAC9Q9UKV0 1011 aa9.13□□□□□ -0.95
USP54-208ENST00000461520 SNX11Q9Y5W9 270 aa9.13□□□□□ -0.95
USP54-208ENST00000461520 IRS2Q9Y4H2 1338 aa9.12□□□□□ -0.95
USP54-208ENST00000461520 TAF5LO75529 589 aa9.12□□□□□ -0.95
USP54-208ENST00000461520 PAPLNO95428 1278 aa9.12□□□□□ -0.95
USP54-208ENST00000461520 TFE3P19532 575 aaPredicted RBP9.12□□□□□ -0.95
USP54-208ENST00000461520 SOX10P56693 466 aa9.12□□□□□ -0.95
USP54-208ENST00000461520 TAGLNQ01995 201 aaKnown RBP9.12□□□□□ -0.95
USP54-208ENST00000461520 TAF7LQ5H9L4 462 aa9.12□□□□□ -0.95
USP54-208ENST00000461520 EPHA10Q5JZY3 1008 aa9.12□□□□□ -0.95
USP54-208ENST00000461520 SLC4A10Q6U841 1118 aa9.12□□□□□ -0.95
USP54-208ENST00000461520 LDHAL6AQ6ZMR3 332 aa9.12□□□□□ -0.95
USP54-208ENST00000461520 HID1Q8IV36 788 aa9.12□□□□□ -0.95
USP54-208ENST00000461520 RC3H2Q9HBD1 1191 aaKnown RBP9.12□□□□□ -0.95
USP54-208ENST00000461520 PRDM7Q9NQW5 492 aa9.12□□□□□ -0.95
USP54-208ENST00000461520 TLR6Q9Y2C9 796 aa9.12□□□□□ -0.95
USP54-208ENST00000461520 PRR33A8MZF0 331 aa9.11□□□□□ -0.95
USP54-208ENST00000461520 E9PSI1 815 aa9.11□□□□□ -0.95
USP54-208ENST00000461520 SNAP23O00161 211 aa9.11□□□□□ -0.95
USP54-208ENST00000461520 CTSHP09668 335 aa9.11□□□□□ -0.95
USP54-208ENST00000461520 IL1R1P14778 569 aa9.11□□□□□ -0.95
USP54-208ENST00000461520 NF2P35240 595 aa9.11□□□□□ -0.95
USP54-208ENST00000461520 FKBP1AP62942 108 aaKnown RBP9.11□□□□□ -0.95
USP54-208ENST00000461520 TAF1CQ15572 869 aaPredicted RBP9.11□□□□□ -0.95
USP54-208ENST00000461520 ZNF804AQ7Z570 1209 aa9.11□□□□□ -0.95
USP54-208ENST00000461520 APOBEC3FQ8IUX4 373 aaKnown RBP9.11□□□□□ -0.95
USP54-208ENST00000461520 KIAA0825Q8IV33 1275 aa9.11□□□□□ -0.95
USP54-208ENST00000461520 ZBED3Q96IU2 234 aaPredicted RBP9.11□□□□□ -0.95
USP54-208ENST00000461520 MIR1-1HGQ9H1L0 117 aa9.11□□□□□ -0.95
USP54-208ENST00000461520 CNNM1Q9NRU3 951 aa9.11□□□□□ -0.95
USP54-208ENST00000461520 RNF186Q9NXI6 227 aa9.11□□□□□ -0.95
USP54-208ENST00000461520 TPX2Q9ULW0 747 aaKnown RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms