RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 CRYMQ14894 314 aa6.77□□□□□ -1.32
VPS13D-202ENST00000460333 EZH2Q15910 746 aaKnown RBP6.77□□□□□ -1.32
VPS13D-202ENST00000460333 NTRK3Q16288 839 aa6.77□□□□□ -1.32
VPS13D-202ENST00000460333 CNPY4Q8N129 248 aa6.77□□□□□ -1.32
VPS13D-202ENST00000460333 ANKS1AQ92625 1134 aa6.77□□□□□ -1.32
VPS13D-202ENST00000460333 ZBTB9Q96C00 473 aa6.77□□□□□ -1.32
VPS13D-202ENST00000460333 OSBPL9Q96SU4 736 aa6.77□□□□□ -1.32
VPS13D-202ENST00000460333 MRIQ9BWK5 157 aa6.77□□□□□ -1.32
VPS13D-202ENST00000460333 KLC4Q9NSK0 619 aa6.77□□□□□ -1.32
VPS13D-202ENST00000460333 STK38LQ9Y2H1 464 aa6.77□□□□□ -1.32
VPS13D-202ENST00000460333 MRFAP1Q9Y605 127 aa6.77□□□□□ -1.32
VPS13D-202ENST00000460333 STK24Q9Y6E0 443 aa6.77□□□□□ -1.32
VPS13D-202ENST00000460333 TARSL2A2RTX5 802 aaKnown RBP6.77□□□□□ -1.33
VPS13D-202ENST00000460333 DNM2P50570 870 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 CAPRIN2Q6IMN6 1127 aaKnown RBP6.77□□□□□ -1.33
VPS13D-202ENST00000460333 DEFB132Q7Z7B7 95 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 TUBB6Q9BUF5 446 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 SPZ1Q9BXG8 430 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 FTOQ9C0B1 505 aaKnown RBP eCLIP6.77□□□□□ -1.33
VPS13D-202ENST00000460333 SLC24A3Q9HC58 644 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 SENP2Q9HC62 589 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 TXLNGQ9NUQ3 528 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 FANCLQ9NW38 375 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 TMOD4Q9NZQ9 345 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 SERPINA10Q9UK55 444 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 GAKO14976 1311 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 TRIM66O15016 1216 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 C21orf2O43822 256 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 PPFIA2O75334 1257 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 RASA1P20936 1047 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 PTPREP23469 700 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 ORC2Q13416 577 aaPredicted RBP6.77□□□□□ -1.33
VPS13D-202ENST00000460333 PLCB4Q15147 1175 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 ABCB5Q2M3G0 1257 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 RESP18Q5W5W9 173 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 ARL6IP4Q66PJ3 421 aaKnown RBP6.77□□□□□ -1.33
VPS13D-202ENST00000460333 CNNM4Q6P4Q7 775 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 ERMNQ8TAM6 284 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 VPS33BQ9H267 617 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.77□□□□□ -1.33
VPS13D-202ENST00000460333 RNF181Q9P0P0 153 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 TROVE2P10155 538 aaKnown RBP eCLIP6.77□□□□□ -1.33
VPS13D-202ENST00000460333 EIF3BP55884 814 aaKnown RBP6.77□□□□□ -1.33
VPS13D-202ENST00000460333 ICA1Q05084 483 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 NR5A1Q13285 461 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 PNOCQ13519 176 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 TCERG1LQ5VWI1 586 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 DCAF15Q66K64 600 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 TMEM179Q6ZVK1 233 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 FMR1NBQ8N0W7 255 aaPredicted RBP6.77□□□□□ -1.33
VPS13D-202ENST00000460333 RETREG2Q8NC44 543 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 PHF20Q9BVI0 1012 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 CSRNP2Q9H175 543 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 FAM114A2Q9NRY5 505 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 TAB2Q9NYJ8 693 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 ZBTB12Q9Y330 459 aaPredicted RBP6.77□□□□□ -1.33
VPS13D-202ENST00000460333 RREB1Q92766 1687 aa6.77□□□□□ -1.33
VPS13D-202ENST00000460333 NID2Q14112 1375 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 KIF28PB7ZC32 967 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 NMT2O60551 498 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 CTNNA2P26232 953 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 MMP14P50281 582 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 ZNF131P52739 623 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 TRPC3Q13507 836 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 ASIC2Q16515 512 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 AOC3Q16853 763 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 LETM2Q2VYF4 491 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 PPP1R18Q6NYC8 613 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 UBL4BQ8N7F7 174 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 DCAF4Q8WV16 495 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 HNRNPLLQ8WVV9 542 aaKnown RBP6.76□□□□□ -1.33
VPS13D-202ENST00000460333 BCORQ6W2J9 1755 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 MYH7P12883 1935 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 SPDYE3A6NKU9 549 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 ENTPD3O75355 529 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 STX2P32856 288 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 KRT79Q5XKE5 535 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 NEK8Q86SG6 692 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 ENOX1Q8TC92 643 aaKnown RBP6.76□□□□□ -1.33
VPS13D-202ENST00000460333 ZDHHC15Q96MV8 337 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 GDAP1L1Q96MZ0 367 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 RUNDC3BQ96NL0 473 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 CENPKQ9BS16 269 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.76□□□□□ -1.33
VPS13D-202ENST00000460333 COL5A3P25940 1745 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-202ENST00000460333 LAMB2P55268 1798 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 WTIPA6NIX2 430 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-202ENST00000460333 MEFVO15553 781 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-202ENST00000460333 H2AFXP16104 143 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-202ENST00000460333 CHRNA5P30532 468 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 RWDD2BP57060 319 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 PTGDRQ13258 359 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 PABPC4Q13310 644 aaKnown RBP eCLIP6.76□□□□□ -1.33
VPS13D-202ENST00000460333 BIRC3Q13489 604 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 BRDTQ58F21 947 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-202ENST00000460333 SLFN13Q68D06 897 aa6.76□□□□□ -1.33
VPS13D-202ENST00000460333 HIBCHQ6NVY1 386 aaPredicted RBP6.76□□□□□ -1.33
VPS13D-202ENST00000460333 LRRC47Q8N1G4 583 aaKnown RBP6.76□□□□□ -1.33
VPS13D-202ENST00000460333 SRBD1Q8N5C6 995 aaKnown RBP6.76□□□□□ -1.33
VPS13D-202ENST00000460333 CSGALNACT2Q8N6G5 542 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 187.4 ms