RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 HOXC13P31276 330 aa13.07□□□□□ -0.32
SYNE2-207ENST00000458046 CYP2C19P33261 490 aa13.07□□□□□ -0.32
SYNE2-207ENST00000458046 RPS8P62241 208 aaKnown RBP13.07□□□□□ -0.32
SYNE2-207ENST00000458046 ST5P78524 1137 aa13.07□□□□□ -0.32
SYNE2-207ENST00000458046 EAPPQ56P03 285 aaPredicted RBP13.07□□□□□ -0.32
SYNE2-207ENST00000458046 TBC1D9BQ66K14 1250 aa13.07□□□□□ -0.32
SYNE2-207ENST00000458046 TYW1BQ6NUM6 668 aa13.07□□□□□ -0.32
SYNE2-207ENST00000458046 ANKRD20A12PQ8NF67 263 aa13.07□□□□□ -0.32
SYNE2-207ENST00000458046 NLRP7Q8WX94 980 aa13.07□□□□□ -0.32
SYNE2-207ENST00000458046 TAF4BQ92750 862 aa13.07□□□□□ -0.32
SYNE2-207ENST00000458046 ITIH6Q6UXX5 1313 aa13.07□□□□□ -0.32
SYNE2-207ENST00000458046 CACNA1SQ13698 1873 aa13.07□□□□□ -0.32
SYNE2-207ENST00000458046 RHOXF2BP0C7M4 288 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 ZNF132P52740 706 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 PMS1P54277 932 aaKnown RBP13.06□□□□□ -0.32
SYNE2-207ENST00000458046 CYP26C1Q6V0L0 522 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 CCDC51Q96ER9 411 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 SERINC2Q96SA4 455 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 RHOXF2Q9BQY4 288 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 ANKZF1Q9H8Y5 726 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 HOMER2Q9NSB8 354 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 ATP8A2Q9NTI2 1148 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 KIF5BP33176 963 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 ARID5AQ03989 594 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 IRF2BP1Q8IU81 584 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 LINC00116Q8NCU8 138 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 FBXO22Q8NEZ5 403 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 PNKPQ96T60 521 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 TMEM60Q9H2L4 133 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 IL17RBQ9NRM6 502 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.06□□□□□ -0.32
SYNE2-207ENST00000458046 TRIM10Q9UDY6 481 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 MYH14Q7Z406 1995 aaKnown RBP13.06□□□□□ -0.32
SYNE2-207ENST00000458046 CCDC66A2RUB6 948 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 USP17L3A6NCW0 530 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 USP17L4A6NCW7 530 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 PABPN1LA6NDY0 278 aaKnown RBP13.06□□□□□ -0.32
SYNE2-207ENST00000458046 H3BRB1 525 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 PARP1P09874 1014 aaKnown RBP13.06□□□□□ -0.32
SYNE2-207ENST00000458046 LONP1P36776 959 aaKnown RBP13.06□□□□□ -0.32
SYNE2-207ENST00000458046 TAF11Q15544 211 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 DTHD1Q6ZMT9 781 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 USP17L1Q7RTZ2 530 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 SLC51AQ86UW1 340 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 CEP112Q8N8E3 955 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 PNMA1Q8ND90 353 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 UBXN6Q9BZV1 441 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 TUT1Q9H6E5 874 aaKnown RBP13.06□□□□□ -0.32
SYNE2-207ENST00000458046 EMILIN3Q9NT22 766 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 RMND1Q9NWS8 449 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 LUZP4Q9P127 313 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 PCDHA4Q9UN74 947 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 TFR2Q9UP52 801 aa13.06□□□□□ -0.32
SYNE2-207ENST00000458046 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.06□□□□□ -0.32
SYNE2-207ENST00000458046 SPATA31A1Q5TZJ5 1347 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 ZBTB7AO95365 584 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 SCGB1D2O95969 90 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 CALML3P27482 149 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 ARHGAP25P42331 645 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 SPAG1Q07617 926 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 INF2Q27J81 1249 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 ZNF394Q53GI3 561 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 PPP2R2DQ66LE6 453 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 WWC2Q6AWC2 1192 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 NEK11Q8NG66 645 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 SUGCTQ9HAC7 445 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 DISC1Q9NRI5 854 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 ARPP21Q9UBL0 812 aaPredicted RBP13.05□□□□□ -0.32
SYNE2-207ENST00000458046 GUCA1BQ9UMX6 200 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 DOT1LQ8TEK3 1739 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 TTC26A0AVF1 554 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 CCDC151A5D8V7 595 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 MYL3P08590 195 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 NOS2P35228 1153 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 SERINC3Q13530 473 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 ECM1Q16610 540 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 TAF3Q5VWG9 929 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 ARL6IP4Q66PJ3 421 aaKnown RBP13.05□□□□□ -0.32
SYNE2-207ENST00000458046 HEATR3Q7Z4Q2 680 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 DZIP1Q86YF9 867 aaKnown RBP13.05□□□□□ -0.32
SYNE2-207ENST00000458046 NAPGQ99747 312 aaPredicted RBP13.05□□□□□ -0.32
SYNE2-207ENST00000458046 PYM1Q9BRP8 204 aaKnown RBP13.05□□□□□ -0.32
SYNE2-207ENST00000458046 MKNK2Q9HBH9 465 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.05□□□□□ -0.32
SYNE2-207ENST00000458046 RABL2BQ9UNT1 228 aa13.05□□□□□ -0.32
SYNE2-207ENST00000458046 GOLGA8HP0CJ92 632 aa13.04□□□□□ -0.32
SYNE2-207ENST00000458046 UBA7P41226 1012 aa13.04□□□□□ -0.32
SYNE2-207ENST00000458046 ADSSL1Q8N142 457 aa13.04□□□□□ -0.32
SYNE2-207ENST00000458046 RNF34Q969K3 372 aa13.04□□□□□ -0.32
SYNE2-207ENST00000458046 NLRP3Q96P20 1036 aa13.04□□□□□ -0.32
SYNE2-207ENST00000458046 CPVLQ9H3G5 476 aa13.04□□□□□ -0.32
SYNE2-207ENST00000458046 SRP68Q9UHB9 627 aaKnown RBP13.04□□□□□ -0.32
SYNE2-207ENST00000458046 EPN1Q9Y6I3 576 aaPredicted RBP13.04□□□□□ -0.32
SYNE2-207ENST00000458046 H7C1D1 291 aa13.04□□□□□ -0.32
SYNE2-207ENST00000458046 DLL1O00548 723 aa13.04□□□□□ -0.32
SYNE2-207ENST00000458046 PIP5K1CO60331 668 aa13.04□□□□□ -0.32
SYNE2-207ENST00000458046 CTHP32929 405 aa13.04□□□□□ -0.32
SYNE2-207ENST00000458046 HIC1Q14526 733 aa13.04□□□□□ -0.32
SYNE2-207ENST00000458046 SBK1Q52WX2 424 aa13.04□□□□□ -0.32
SYNE2-207ENST00000458046 JAKMIP3Q5VZ66 844 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms