RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 EIF2AK2P19525 551 aaKnown RBP9.99□□□□□ -0.81
SYNE1-214ENST00000454018 EDNRBP24530 442 aa9.99□□□□□ -0.81
SYNE1-214ENST00000454018 SREBF1P36956 1147 aa9.99□□□□□ -0.81
SYNE1-214ENST00000454018 GUCY1B3Q02153 619 aa9.99□□□□□ -0.81
SYNE1-214ENST00000454018 GNL2Q13823 731 aaKnown RBP9.99□□□□□ -0.81
SYNE1-214ENST00000454018 PGM5Q15124 567 aa9.99□□□□□ -0.81
SYNE1-214ENST00000454018 JAKMIP3Q5VZ66 844 aa9.99□□□□□ -0.81
SYNE1-214ENST00000454018 XRRA1Q6P2D8 792 aa9.99□□□□□ -0.81
SYNE1-214ENST00000454018 ARMCX2Q7L311 632 aa9.99□□□□□ -0.81
SYNE1-214ENST00000454018 RASGRP4Q8TDF6 673 aa9.99□□□□□ -0.81
SYNE1-214ENST00000454018 MORC4Q8TE76 937 aa9.99□□□□□ -0.81
SYNE1-214ENST00000454018 STK32AQ8WU08 396 aa9.99□□□□□ -0.81
SYNE1-214ENST00000454018 TRIB2Q92519 343 aa9.99□□□□□ -0.81
SYNE1-214ENST00000454018 TAAR1Q96RJ0 339 aa9.99□□□□□ -0.81
SYNE1-214ENST00000454018 PDCD2LQ9BRP1 358 aa9.99□□□□□ -0.81
SYNE1-214ENST00000454018 TINF2Q9BSI4 451 aa9.99□□□□□ -0.81
SYNE1-214ENST00000454018 FOXP1Q9H334 677 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-214ENST00000454018 ZMIZ1Q9ULJ6 1067 aa9.99□□□□□ -0.81
SYNE1-214ENST00000454018 PCDHA6Q9UN73 950 aa9.99□□□□□ -0.81
SYNE1-214ENST00000454018 PTPN22Q9Y2R2 807 aa9.99□□□□□ -0.81
SYNE1-214ENST00000454018 PCDHA8Q9Y5H6 950 aa9.99□□□□□ -0.81
SYNE1-214ENST00000454018 PTCH2Q9Y6C5 1203 aa9.99□□□□□ -0.81
SYNE1-214ENST00000454018 LOXHD1Q8IVV2 1947 aa9.98□□□□□ -0.81
SYNE1-214ENST00000454018 VPS37CA5D8V6 355 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-214ENST00000454018 STAM2O75886 525 aa9.98□□□□□ -0.81
SYNE1-214ENST00000454018 IGHA2P01877 340 aa9.98□□□□□ -0.81
SYNE1-214ENST00000454018 SYT1P21579 422 aa9.98□□□□□ -0.81
SYNE1-214ENST00000454018 CCND2P30279 289 aa9.98□□□□□ -0.81
SYNE1-214ENST00000454018 NONOQ15233 471 aaKnown RBP eCLIP9.98□□□□□ -0.81
SYNE1-214ENST00000454018 CCL14Q16627 93 aa9.98□□□□□ -0.81
SYNE1-214ENST00000454018 TMEM164Q5U3C3 297 aa9.98□□□□□ -0.81
SYNE1-214ENST00000454018 MFSD14CQ5VZR4 134 aa9.98□□□□□ -0.81
SYNE1-214ENST00000454018 PCNX4Q63HM2 1172 aa9.98□□□□□ -0.81
SYNE1-214ENST00000454018 FBXO46Q6PJ61 603 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-214ENST00000454018 SYMPKQ92797 1274 aaKnown RBP9.98□□□□□ -0.81
SYNE1-214ENST00000454018 TNFRSF25Q93038 417 aa9.98□□□□□ -0.81
SYNE1-214ENST00000454018 PURBQ96QR8 312 aaKnown RBP9.98□□□□□ -0.81
SYNE1-214ENST00000454018 TMEM260Q9NX78 707 aa9.98□□□□□ -0.81
SYNE1-214ENST00000454018 NRBP1Q9UHY1 535 aa9.98□□□□□ -0.81
SYNE1-214ENST00000454018 CENPFP49454 3210 aa9.98□□□□□ -0.81
SYNE1-214ENST00000454018 BTBD18B2RXH4 712 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 ADAMTS3O15072 1205 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 STX6O43752 255 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 NR3C2P08235 984 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 ELNP15502 786 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 U2AF2P26368 475 aaKnown RBP eCLIP9.97□□□□□ -0.81
SYNE1-214ENST00000454018 GRK4P32298 578 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 ARHGAP4P98171 946 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 NR5A1Q13285 461 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 PHLDB3Q6NSJ2 640 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 NOSTRINQ8IVI9 506 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 IL31RAQ8NI17 732 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 CRYGNQ8WXF5 182 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 PGBD1Q96JS3 809 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 VTA1Q9NP79 307 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-214ENST00000454018 FLRT1Q9NZU1 646 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 CNPY2Q9Y2B0 182 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 KAT6AQ92794 2004 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 UBXN2AP68543 259 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 ELOAQ14241 798 aaKnown RBP9.97□□□□□ -0.81
SYNE1-214ENST00000454018 STXBP2Q15833 593 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 SLC9C1Q4G0N8 1177 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 SWT1Q5T5J6 900 aaKnown RBP9.97□□□□□ -0.81
SYNE1-214ENST00000454018 MCTP1Q6DN14 999 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 MOXD1Q6UVY6 613 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 PIK3AP1Q6ZUJ8 805 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 BRAPQ7Z569 592 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 NEK8Q86SG6 692 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 VSIG10LQ86VR7 867 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 TBCKQ8TEA7 893 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 NAP1L4Q99733 375 aaKnown RBP9.97□□□□□ -0.81
SYNE1-214ENST00000454018 ABHD16BQ9H3Z7 469 aa9.97□□□□□ -0.81
SYNE1-214ENST00000454018 KIF28PB7ZC32 967 aa9.96□□□□□ -0.82
SYNE1-214ENST00000454018 EIF3JO75822 258 aaKnown RBP9.96□□□□□ -0.82
SYNE1-214ENST00000454018 SNAI1O95863 264 aaPredicted RBP9.96□□□□□ -0.82
SYNE1-214ENST00000454018 INHAP05111 366 aa9.96□□□□□ -0.82
SYNE1-214ENST00000454018 CYP3A4P08684 503 aa9.96□□□□□ -0.82
SYNE1-214ENST00000454018 MYCLP12524 364 aaPredicted RBP9.96□□□□□ -0.82
SYNE1-214ENST00000454018 CYBAP13498 195 aa9.96□□□□□ -0.82
SYNE1-214ENST00000454018 CYP2C19P33261 490 aa9.96□□□□□ -0.82
SYNE1-214ENST00000454018 TRAPPC10P48553 1259 aa9.96□□□□□ -0.82
SYNE1-214ENST00000454018 USP11P51784 963 aa9.96□□□□□ -0.82
SYNE1-214ENST00000454018 SETQ01105 290 aaPredicted RBP9.96□□□□□ -0.82
SYNE1-214ENST00000454018 INF2Q27J81 1249 aa9.96□□□□□ -0.82
SYNE1-214ENST00000454018 GNPTABQ3T906 1256 aa9.96□□□□□ -0.82
SYNE1-214ENST00000454018 MAP3K21Q5TCX8 1036 aa9.96□□□□□ -0.82
SYNE1-214ENST00000454018 FBXO16Q8IX29 292 aaPredicted RBP9.96□□□□□ -0.82
SYNE1-214ENST00000454018 INPP4AQ96PE3 977 aaPredicted RBP9.96□□□□□ -0.82
SYNE1-214ENST00000454018 NOL7Q9UMY1 257 aaKnown RBP9.96□□□□□ -0.82
SYNE1-214ENST00000454018 MTMR6Q9Y217 621 aa9.96□□□□□ -0.82
SYNE1-214ENST00000454018 RBM47A0AV96 593 aaKnown RBP9.95□□□□□ -0.82
SYNE1-214ENST00000454018 GCFC2P16383 781 aaKnown RBP9.95□□□□□ -0.82
SYNE1-214ENST00000454018 CIITAP33076 1130 aa9.95□□□□□ -0.82
SYNE1-214ENST00000454018 MRPS9P82933 396 aaKnown RBP9.95□□□□□ -0.82
SYNE1-214ENST00000454018 CEP55Q53EZ4 464 aa9.95□□□□□ -0.82
SYNE1-214ENST00000454018 NIPA1Q7RTP0 329 aa9.95□□□□□ -0.82
SYNE1-214ENST00000454018 SCFD2Q8WU76 684 aa9.95□□□□□ -0.82
SYNE1-214ENST00000454018 GPRASP2Q96D09 838 aa9.95□□□□□ -0.82
SYNE1-214ENST00000454018 CDHR1Q96JP9 859 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms