RNA–Protein interactions for RNA: ENST00000451492.5

USP54-207, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 509 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-207ENST00000451492 PPP1R18Q6NYC8 613 aa11.09□□□□□ -0.63
USP54-207ENST00000451492 RUFY3Q7L099 469 aa11.09□□□□□ -0.63
USP54-207ENST00000451492 MYLIPQ8WY64 445 aa11.09□□□□□ -0.63
USP54-207ENST00000451492 DHX38Q92620 1227 aaKnown RBP11.09□□□□□ -0.63
USP54-207ENST00000451492 WNT8BQ93098 351 aa11.09□□□□□ -0.63
USP54-207ENST00000451492 UIMC1Q96RL1 719 aa11.09□□□□□ -0.63
USP54-207ENST00000451492 GPR20Q99678 358 aa11.09□□□□□ -0.63
USP54-207ENST00000451492 SLC26A6Q9BXS9 759 aa11.09□□□□□ -0.63
USP54-207ENST00000451492 ANO3Q9BYT9 981 aa11.09□□□□□ -0.63
USP54-207ENST00000451492 PBX4Q9BYU1 374 aa11.09□□□□□ -0.63
USP54-207ENST00000451492 MTIF3Q9H2K0 278 aaKnown RBP11.09□□□□□ -0.63
USP54-207ENST00000451492 RIC8AQ9NPQ8 531 aa11.09□□□□□ -0.63
USP54-207ENST00000451492 BARHL2Q9NY43 387 aa11.09□□□□□ -0.63
USP54-207ENST00000451492 C17orf102A2RUQ5 167 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 H3BRB1 525 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 HAS3O00219 553 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 ATP9AO75110 1047 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 IQCF3P0C7M6 154 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 SMIM10L2AP0DMW4 78 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 SMIM10L2BP0DMW5 78 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 SCG2P13521 617 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 ITGB5P18084 799 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 MARK3P27448 753 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 ICAM3P32942 547 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 RABGGTBP53611 331 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 AKAP17AQ02040 695 aaKnown RBP11.08□□□□□ -0.64
USP54-207ENST00000451492 TOB2Q14106 344 aaPredicted RBP11.08□□□□□ -0.64
USP54-207ENST00000451492 JAKMIP3Q5VZ66 844 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 METTL7BQ6UX53 244 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 SESTD1Q86VW0 696 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 RPUSD2Q8IZ73 545 aaKnown RBP11.08□□□□□ -0.64
USP54-207ENST00000451492 HERVK_113Q902F9 699 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 TIFAQ96CG3 184 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 CTAGE1Q96RT6 745 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 C16orf70Q9BSU1 422 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 USP26Q9BXU7 913 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 NKX2-4Q9H2Z4 354 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 SEMA6BQ9H3T3 888 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 TUT1Q9H6E5 874 aaKnown RBP11.08□□□□□ -0.64
USP54-207ENST00000451492 CYP46A1Q9Y6A2 500 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 SLC4A7Q9Y6M7 1214 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 CHD9Q3L8U1 2897 aa11.08□□□□□ -0.64
USP54-207ENST00000451492 NID2Q14112 1375 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 MYH9P35579 1960 aaKnown RBP11.07□□□□□ -0.64
USP54-207ENST00000451492 CCDC196A0A1B0GTZ2 297 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 hCG_1984214I3L0E3 225 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 DDX39AO00148 427 aaKnown RBP11.07□□□□□ -0.64
USP54-207ENST00000451492 PITPNM1O00562 1244 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 ADAMTS3O15072 1205 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 DTNBO60941 627 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 PPFIA4O75335 1185 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 CTSHP09668 335 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 CKBP12277 381 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 ACTN1P12814 892 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 KCNA2P16389 499 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 TCF7P36402 384 aaPredicted RBP11.07□□□□□ -0.64
USP54-207ENST00000451492 ZNF76P36508 570 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 RCAN1P53805 252 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 PFKFB3Q16875 520 aaPredicted RBP11.07□□□□□ -0.64
USP54-207ENST00000451492 RASIP1Q5U651 963 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 XRRA1Q6P2D8 792 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 LRRC8DQ7L1W4 858 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 ZNF713Q8N859 430 aaPredicted RBP11.07□□□□□ -0.64
USP54-207ENST00000451492 CYP2W1Q8TAV3 490 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 CAGE1Q8TC20 777 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 RASGRP4Q8TDF6 673 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 ATP6V0A1Q93050 837 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 GPRASP2Q96D09 838 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 VWCEQ96DN2 955 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 CDX2Q99626 313 aaPredicted RBP11.07□□□□□ -0.64
USP54-207ENST00000451492 ZNF215Q9UL58 517 aaPredicted RBP11.07□□□□□ -0.64
USP54-207ENST00000451492 STXBP5LQ9Y2K9 1186 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 UBIAD1Q9Y5Z9 338 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 UNC80Q8N2C7 3258 aa11.07□□□□□ -0.64
USP54-207ENST00000451492 REV3LO60673 3130 aa11.06□□□□□ -0.64
USP54-207ENST00000451492 TREHO43280 583 aa11.06□□□□□ -0.64
USP54-207ENST00000451492 HOXD8P13378 290 aaPredicted RBP11.06□□□□□ -0.64
USP54-207ENST00000451492 MYOGP15173 224 aa11.06□□□□□ -0.64
USP54-207ENST00000451492 FOSL2P15408 326 aa11.06□□□□□ -0.64
USP54-207ENST00000451492 SELPP16109 830 aa11.06□□□□□ -0.64
USP54-207ENST00000451492 PDIA3P30101 505 aaKnown RBP11.06□□□□□ -0.64
USP54-207ENST00000451492 RFC2P35250 354 aa11.06□□□□□ -0.64
USP54-207ENST00000451492 THPOP40225 353 aa11.06□□□□□ -0.64
USP54-207ENST00000451492 ARHGAP4P98171 946 aa11.06□□□□□ -0.64
USP54-207ENST00000451492 PTK7Q13308 1070 aa11.06□□□□□ -0.64
USP54-207ENST00000451492 ZNF618Q5T7W0 954 aa11.06□□□□□ -0.64
USP54-207ENST00000451492 AFAP1L1Q8TED9 768 aa11.06□□□□□ -0.64
USP54-207ENST00000451492 CDHR1Q96JP9 859 aa11.06□□□□□ -0.64
USP54-207ENST00000451492 MXRA8Q9BRK3 442 aa11.06□□□□□ -0.64
USP54-207ENST00000451492 ZNF576Q9H609 170 aa11.06□□□□□ -0.64
USP54-207ENST00000451492 ZSWIM6Q9HCJ5 1215 aa11.06□□□□□ -0.64
USP54-207ENST00000451492 JADE2Q9NQC1 790 aa11.06□□□□□ -0.64
USP54-207ENST00000451492 PDRG1Q9NUG6 133 aa11.06□□□□□ -0.64
USP54-207ENST00000451492 SETD4Q9NVD3 440 aa11.06□□□□□ -0.64
USP54-207ENST00000451492 VPS54Q9P1Q0 977 aa11.06□□□□□ -0.64
USP54-207ENST00000451492 MSRAQ9UJ68 235 aa11.06□□□□□ -0.64
USP54-207ENST00000451492 YBX2Q9Y2T7 364 aaKnown RBP11.06□□□□□ -0.64
USP54-207ENST00000451492 PRUNE2Q8WUY3 3088 aa11.06□□□□□ -0.64
USP54-207ENST00000451492 NLRC5Q86WI3 1866 aa11.06□□□□□ -0.64
USP54-207ENST00000451492 CHD7Q9P2D1 2997 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms