RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 WWC2Q6AWC2 1192 aa23.85■■□□□ 1.41
SDC1-205ENST00000447124 LRRC8DQ7L1W4 858 aa23.85■■□□□ 1.41
SDC1-205ENST00000447124 HEATR3Q7Z4Q2 680 aa23.85■■□□□ 1.41
SDC1-205ENST00000447124 CCDC155Q8N6L0 562 aa23.85■■□□□ 1.41
SDC1-205ENST00000447124 SENP7Q9BQF6 1050 aa23.85■■□□□ 1.41
SDC1-205ENST00000447124 PRDM12Q9H4Q4 367 aa23.85■■□□□ 1.41
SDC1-205ENST00000447124 TUT1Q9H6E5 874 aaKnown RBP23.85■■□□□ 1.41
SDC1-205ENST00000447124 RBM28Q9NW13 759 aaKnown RBP23.85■■□□□ 1.41
SDC1-205ENST00000447124 PCDHA6Q9UN73 950 aa23.85■■□□□ 1.41
SDC1-205ENST00000447124 PCDHA8Q9Y5H6 950 aa23.85■■□□□ 1.41
SDC1-205ENST00000447124 PRUNE2Q8WUY3 3088 aa23.85■■□□□ 1.41
SDC1-205ENST00000447124 EYSQ5T1H1 3165 aa23.85■■□□□ 1.41
SDC1-205ENST00000447124 KLF18A0A0U1RQI7 1052 aa23.84■■□□□ 1.41
SDC1-205ENST00000447124 ACTN1P12814 892 aa23.84■■□□□ 1.41
SDC1-205ENST00000447124 NLRX1Q86UT6 975 aa23.84■■□□□ 1.41
SDC1-205ENST00000447124 PHF6Q8IWS0 365 aaKnown RBP eCLIP23.84■■□□□ 1.41
SDC1-205ENST00000447124 PCDHA11Q9Y5I1 949 aa23.84■■□□□ 1.41
SDC1-205ENST00000447124 SNX14Q9Y5W7 946 aa23.84■■□□□ 1.41
SDC1-205ENST00000447124 UBIAD1Q9Y5Z9 338 aa23.84■■□□□ 1.41
SDC1-205ENST00000447124 CXCL10P02778 98 aa23.83■■□□□ 1.41
SDC1-205ENST00000447124 HOXC8P31273 242 aa23.83■■□□□ 1.41
SDC1-205ENST00000447124 ADGRE1Q14246 886 aa23.83■■□□□ 1.41
SDC1-205ENST00000447124 ZNF618Q5T7W0 954 aa23.83■■□□□ 1.41
SDC1-205ENST00000447124 USP26Q9BXU7 913 aa23.83■■□□□ 1.41
SDC1-205ENST00000447124 RNPEPQ9H4A4 650 aa23.83■■□□□ 1.41
SDC1-205ENST00000447124 SLC28A3Q9HAS3 691 aa23.83■■□□□ 1.41
SDC1-205ENST00000447124 GOLGA8AA7E2F4 631 aa23.82■■□□□ 1.4
SDC1-205ENST00000447124 GOLGA8BA8MQT2 603 aa23.82■■□□□ 1.4
SDC1-205ENST00000447124 NOP56O00567 594 aaKnown RBP23.82■■□□□ 1.4
SDC1-205ENST00000447124 HMGB1P09429 215 aaKnown RBP23.82■■□□□ 1.4
SDC1-205ENST00000447124 SMIM10L2AP0DMW4 78 aa23.82■■□□□ 1.4
SDC1-205ENST00000447124 SMIM10L2BP0DMW5 78 aa23.82■■□□□ 1.4
SDC1-205ENST00000447124 KCNA2P16389 499 aa23.82■■□□□ 1.4
SDC1-205ENST00000447124 ADD1P35611 737 aaKnown RBP23.82■■□□□ 1.4
SDC1-205ENST00000447124 MBTPS1Q14703 1052 aa23.82■■□□□ 1.4
SDC1-205ENST00000447124 UTP14CQ5TAP6 766 aaKnown RBP23.82■■□□□ 1.4
SDC1-205ENST00000447124 Q6ZUG5 572 aa23.82■■□□□ 1.4
SDC1-205ENST00000447124 TRIM50Q86XT4 487 aa23.82■■□□□ 1.4
SDC1-205ENST00000447124 USP38Q8NB14 1042 aa23.82■■□□□ 1.4
SDC1-205ENST00000447124 PHOSPHO2Q8TCD6 241 aa23.82■■□□□ 1.4
SDC1-205ENST00000447124 GPRASP2Q96D09 838 aa23.82■■□□□ 1.4
SDC1-205ENST00000447124 JAKMIP1Q96N16 626 aaKnown RBP23.82■■□□□ 1.4
SDC1-205ENST00000447124 UNC80Q8N2C7 3258 aa23.81■■□□□ 1.4
SDC1-205ENST00000447124 CHD7Q9P2D1 2997 aa23.81■■□□□ 1.4
SDC1-205ENST00000447124 C17orf102A2RUQ5 167 aa23.81■■□□□ 1.4
SDC1-205ENST00000447124 TREHO43280 583 aa23.81■■□□□ 1.4
SDC1-205ENST00000447124 SP4Q02446 784 aa23.81■■□□□ 1.4
SDC1-205ENST00000447124 APOBRQ0VD83 1088 aa23.81■■□□□ 1.4
SDC1-205ENST00000447124 SERINC5Q86VE9 423 aa23.81■■□□□ 1.4
SDC1-205ENST00000447124 GBF1Q92538 1859 aa23.81■■□□□ 1.4
SDC1-205ENST00000447124 DOCK5Q9H7D0 1870 aa23.81■■□□□ 1.4
SDC1-205ENST00000447124 GSTTP1A0A1W2PQM5 241 aa23.8■■□□□ 1.4
SDC1-205ENST00000447124 SPDYE3A6NKU9 549 aa23.8■■□□□ 1.4
SDC1-205ENST00000447124 STXBP3O00186 592 aa23.8■■□□□ 1.4
SDC1-205ENST00000447124 ATP6V0A1Q93050 837 aa23.8■■□□□ 1.4
SDC1-205ENST00000447124 RIC8AQ9NPQ8 531 aa23.8■■□□□ 1.4
SDC1-205ENST00000447124 JADE2Q9NQC1 790 aa23.8■■□□□ 1.4
SDC1-205ENST00000447124 CUL9Q8IWT3 2517 aa23.8■■□□□ 1.4
SDC1-205ENST00000447124 ARHGEF15O94989 841 aa23.79■■□□□ 1.4
SDC1-205ENST00000447124 PARNO95453 639 aaKnown RBP23.79■■□□□ 1.4
SDC1-205ENST00000447124 NAPAP54920 295 aa23.79■■□□□ 1.4
SDC1-205ENST00000447124 HERC6Q8IVU3 1022 aa23.79■■□□□ 1.4
SDC1-205ENST00000447124 CYP2W1Q8TAV3 490 aa23.79■■□□□ 1.4
SDC1-205ENST00000447124 PGBD1Q96JS3 809 aa23.79■■□□□ 1.4
SDC1-205ENST00000447124 SLC9A7Q96T83 725 aa23.79■■□□□ 1.4
SDC1-205ENST00000447124 SETD4Q9NVD3 440 aa23.79■■□□□ 1.4
SDC1-205ENST00000447124 SMCO2A6NFE2 343 aa23.78■■□□□ 1.4
SDC1-205ENST00000447124 BAIAP3O94812 1187 aa23.78■■□□□ 1.4
SDC1-205ENST00000447124 RCAN1P53805 252 aa23.78■■□□□ 1.4
SDC1-205ENST00000447124 ADAM17P78536 824 aa23.78■■□□□ 1.4
SDC1-205ENST00000447124 CNKSR3Q6P9H4 555 aa23.78■■□□□ 1.4
SDC1-205ENST00000447124 TMCO2Q7Z6W1 182 aaPredicted RBP23.78■■□□□ 1.4
SDC1-205ENST00000447124 GIMAP8Q8ND71 665 aaPredicted RBP23.78■■□□□ 1.4
SDC1-205ENST00000447124 BRF1Q92994 677 aa23.78■■□□□ 1.4
SDC1-205ENST00000447124 GAS2L1Q99501 681 aaPredicted RBP23.78■■□□□ 1.4
SDC1-205ENST00000447124 OSBPL7Q9BZF2 842 aa23.78■■□□□ 1.4
SDC1-205ENST00000447124 TMEM260Q9NX78 707 aa23.78■■□□□ 1.4
SDC1-205ENST00000447124 BARHL2Q9NY43 387 aa23.78■■□□□ 1.4
SDC1-205ENST00000447124 PKD2L1Q9P0L9 805 aa23.78■■□□□ 1.4
SDC1-205ENST00000447124 NAP1L2Q9ULW6 460 aaPredicted RBP23.78■■□□□ 1.4
SDC1-205ENST00000447124 TANC1Q9C0D5 1861 aa23.78■■□□□ 1.4
SDC1-205ENST00000447124 ADAMTS3O15072 1205 aa23.77■■□□□ 1.4
SDC1-205ENST00000447124 CA3P07451 260 aa23.77■■□□□ 1.4
SDC1-205ENST00000447124 THPOP40225 353 aa23.77■■□□□ 1.4
SDC1-205ENST00000447124 WDR5P61964 334 aaKnown RBP23.77■■□□□ 1.4
SDC1-205ENST00000447124 PPP2R2DQ66LE6 453 aa23.77■■□□□ 1.4
SDC1-205ENST00000447124 BLOC1S2Q6QNY1 142 aa23.77■■□□□ 1.4
SDC1-205ENST00000447124 SEPT1Q8WYJ6 367 aa23.77■■□□□ 1.4
SDC1-205ENST00000447124 CDHR1Q96JP9 859 aa23.77■■□□□ 1.4
SDC1-205ENST00000447124 MXRA8Q9BRK3 442 aa23.77■■□□□ 1.4
SDC1-205ENST00000447124 RSPH10B2B2RC85 870 aa23.76■■□□□ 1.39
SDC1-205ENST00000447124 MAFGO15525 162 aa23.76■■□□□ 1.39
SDC1-205ENST00000447124 RSPH10BP0C881 870 aa23.76■■□□□ 1.39
SDC1-205ENST00000447124 RPS6KB1P23443 525 aa23.76■■□□□ 1.39
SDC1-205ENST00000447124 TCF7P36402 384 aaPredicted RBP23.76■■□□□ 1.39
SDC1-205ENST00000447124 CLK2P49760 499 aaKnown RBP23.76■■□□□ 1.39
SDC1-205ENST00000447124 METAP2P50579 478 aaKnown RBP eCLIP23.76■■□□□ 1.39
SDC1-205ENST00000447124 ADCY7P51828 1080 aa23.76■■□□□ 1.39
SDC1-205ENST00000447124 DEFB103AP81534 67 aa23.76■■□□□ 1.39
SDC1-205ENST00000447124 FGD1P98174 961 aa23.76■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms