RNA–Protein interactions for RNA: ENST00000440514.1

CPSF4-205, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 578 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-205ENST00000440514 CDK7P50613 346 aa20.54■□□□□ 0.88
CPSF4-205ENST00000440514 ANKRD33Q7Z3H0 272 aa20.54■□□□□ 0.88
CPSF4-205ENST00000440514 SH3RF1Q7Z6J0 888 aa20.54■□□□□ 0.88
CPSF4-205ENST00000440514 PLA2G4DQ86XP0 818 aa20.54■□□□□ 0.88
CPSF4-205ENST00000440514 TBCKQ8TEA7 893 aa20.54■□□□□ 0.88
CPSF4-205ENST00000440514 KAT2BQ92831 832 aa20.54■□□□□ 0.88
CPSF4-205ENST00000440514 TMX3Q96JJ7 454 aa20.54■□□□□ 0.88
CPSF4-205ENST00000440514 SENP7Q9BQF6 1050 aa20.54■□□□□ 0.88
CPSF4-205ENST00000440514 CEP290O15078 2479 aa20.54■□□□□ 0.88
CPSF4-205ENST00000440514 MEIS1O00470 390 aa20.53■□□□□ 0.88
CPSF4-205ENST00000440514 NOP56O00567 594 aaKnown RBP20.53■□□□□ 0.88
CPSF4-205ENST00000440514 EDIL3O43854 480 aa20.53■□□□□ 0.88
CPSF4-205ENST00000440514 CLTBP09497 229 aa20.53■□□□□ 0.88
CPSF4-205ENST00000440514 NBPF20Q3BBV1 942 aa20.53■□□□□ 0.88
CPSF4-205ENST00000440514 NIPA1Q7RTP0 329 aa20.53■□□□□ 0.88
CPSF4-205ENST00000440514 KRT25Q7Z3Z0 450 aa20.53■□□□□ 0.88
CPSF4-205ENST00000440514 FAM126BQ8IXS8 530 aa20.53■□□□□ 0.88
CPSF4-205ENST00000440514 UIMC1Q96RL1 719 aa20.53■□□□□ 0.88
CPSF4-205ENST00000440514 GPR20Q99678 358 aa20.53■□□□□ 0.88
CPSF4-205ENST00000440514 AGO4Q9HCK5 861 aaKnown RBP20.53■□□□□ 0.88
CPSF4-205ENST00000440514 MROH7Q68CQ1 1323 aa20.53■□□□□ 0.88
CPSF4-205ENST00000440514 MAFGO15525 162 aa20.52■□□□□ 0.88
CPSF4-205ENST00000440514 GUCY1B3Q02153 619 aa20.52■□□□□ 0.88
CPSF4-205ENST00000440514 FAAP100Q0VG06 881 aa20.52■□□□□ 0.88
CPSF4-205ENST00000440514 ITGB3BPQ13352 177 aaPredicted RBP20.52■□□□□ 0.88
CPSF4-205ENST00000440514 NONOQ15233 471 aaKnown RBP eCLIP20.52■□□□□ 0.88
CPSF4-205ENST00000440514 FAM47CQ5HY64 1035 aa20.52■□□□□ 0.88
CPSF4-205ENST00000440514 KRT40Q6A162 431 aa20.52■□□□□ 0.88
CPSF4-205ENST00000440514 GIMAP8Q8ND71 665 aaPredicted RBP20.52■□□□□ 0.88
CPSF4-205ENST00000440514 TRIM43BA6NCK2 446 aa20.51■□□□□ 0.87
CPSF4-205ENST00000440514 FAM205CA6NFA0 338 aa20.51■□□□□ 0.87
CPSF4-205ENST00000440514 DCDC2CA8MYV0 355 aa20.51■□□□□ 0.87
CPSF4-205ENST00000440514 F2P00734 622 aa20.51■□□□□ 0.87
CPSF4-205ENST00000440514 MMP1P03956 469 aa20.51■□□□□ 0.87
CPSF4-205ENST00000440514 LGALS2P05162 132 aa20.51■□□□□ 0.87
CPSF4-205ENST00000440514 CIITAP33076 1130 aa20.51■□□□□ 0.87
CPSF4-205ENST00000440514 KRT2P35908 639 aa20.51■□□□□ 0.87
CPSF4-205ENST00000440514 PSEN2P49810 448 aa20.51■□□□□ 0.87
CPSF4-205ENST00000440514 NR5A1Q13285 461 aa20.51■□□□□ 0.87
CPSF4-205ENST00000440514 TRIM29Q14134 588 aa20.51■□□□□ 0.87
CPSF4-205ENST00000440514 INF2Q27J81 1249 aa20.51■□□□□ 0.87
CPSF4-205ENST00000440514 PRR16Q569H4 304 aa20.51■□□□□ 0.87
CPSF4-205ENST00000440514 TRIM50Q86XT4 487 aa20.51■□□□□ 0.87
CPSF4-205ENST00000440514 LENG9Q96B70 501 aa20.51■□□□□ 0.87
CPSF4-205ENST00000440514 TRIM43Q96BQ3 446 aaPredicted RBP20.51■□□□□ 0.87
CPSF4-205ENST00000440514 TOX2Q96NM4 488 aa20.51■□□□□ 0.87
CPSF4-205ENST00000440514 PRKAG2Q9UGJ0 569 aa20.51■□□□□ 0.87
CPSF4-205ENST00000440514 DNAH12Q6ZR08 3092 aa20.5■□□□□ 0.87
CPSF4-205ENST00000440514 CCDC194A0A1B0GVG4 234 aa20.5■□□□□ 0.87
CPSF4-205ENST00000440514 TLR3O15455 904 aaKnown RBP20.5■□□□□ 0.87
CPSF4-205ENST00000440514 B4GALT4O60513 344 aa20.5■□□□□ 0.87
CPSF4-205ENST00000440514 PPFIA4O75335 1185 aa20.5■□□□□ 0.87
CPSF4-205ENST00000440514 TDP2O95551 362 aa20.5■□□□□ 0.87
CPSF4-205ENST00000440514 MCM2P49736 904 aa20.5■□□□□ 0.87
CPSF4-205ENST00000440514 HMGN5P82970 282 aaKnown RBP20.5■□□□□ 0.87
CPSF4-205ENST00000440514 SETQ01105 290 aaPredicted RBP20.5■□□□□ 0.87
CPSF4-205ENST00000440514 MFSD10Q14728 455 aa20.5■□□□□ 0.87
CPSF4-205ENST00000440514 EARS2Q5JPH6 523 aaKnown RBP20.5■□□□□ 0.87
CPSF4-205ENST00000440514 UTP14CQ5TAP6 766 aaKnown RBP20.5■□□□□ 0.87
CPSF4-205ENST00000440514 PIK3AP1Q6ZUJ8 805 aa20.5■□□□□ 0.87
CPSF4-205ENST00000440514 TNFRSF25Q93038 417 aa20.5■□□□□ 0.87
CPSF4-205ENST00000440514 SDF4Q9BRK5 362 aa20.5■□□□□ 0.87
CPSF4-205ENST00000440514 C16orf70Q9BSU1 422 aa20.5■□□□□ 0.87
CPSF4-205ENST00000440514 TRPV6Q9H1D0 765 aa20.5■□□□□ 0.87
CPSF4-205ENST00000440514 BRMS1Q9HCU9 246 aa20.5■□□□□ 0.87
CPSF4-205ENST00000440514 JPH1Q9HDC5 661 aaPredicted RBP20.5■□□□□ 0.87
CPSF4-205ENST00000440514 NFASCO94856 1347 aa20.5■□□□□ 0.87
CPSF4-205ENST00000440514 DDX39AO00148 427 aaKnown RBP20.49■□□□□ 0.87
CPSF4-205ENST00000440514 CD4P01730 458 aa20.49■□□□□ 0.87
CPSF4-205ENST00000440514 KIAA0753Q2KHM9 967 aa20.49■□□□□ 0.87
CPSF4-205ENST00000440514 NFRKBQ6P4R8 1299 aa20.49■□□□□ 0.87
CPSF4-205ENST00000440514 CHRDL2Q6WN34 429 aa20.49■□□□□ 0.87
CPSF4-205ENST00000440514 DIS3L2Q8IYB7 885 aaKnown RBP20.49■□□□□ 0.87
CPSF4-205ENST00000440514 FAM184AQ8NB25 1140 aa20.49■□□□□ 0.87
CPSF4-205ENST00000440514 C8orf76Q96K31 380 aa20.49■□□□□ 0.87
CPSF4-205ENST00000440514 KATNAL1Q9BW62 490 aa20.49■□□□□ 0.87
CPSF4-205ENST00000440514 TRMT13Q9NUP7 481 aaKnown RBP20.49■□□□□ 0.87
CPSF4-205ENST00000440514 TMEM39AQ9NV64 488 aa20.49■□□□□ 0.87
CPSF4-205ENST00000440514 SLC9A2Q9UBY0 812 aa20.49■□□□□ 0.87
CPSF4-205ENST00000440514 GSTTP1A0A1W2PQM5 241 aa20.48■□□□□ 0.87
CPSF4-205ENST00000440514 BTBD18B2RXH4 712 aa20.48■□□□□ 0.87
CPSF4-205ENST00000440514 HAS3O00219 553 aa20.48■□□□□ 0.87
CPSF4-205ENST00000440514 IPO5O00410 1097 aaKnown RBP20.48■□□□□ 0.87
CPSF4-205ENST00000440514 ITGB8P26012 769 aa20.48■□□□□ 0.87
CPSF4-205ENST00000440514 TCF7P36402 384 aaPredicted RBP20.48■□□□□ 0.87
CPSF4-205ENST00000440514 MAGEA10P43363 369 aaPredicted RBP20.48■□□□□ 0.87
CPSF4-205ENST00000440514 USP11P51784 963 aa20.48■□□□□ 0.87
CPSF4-205ENST00000440514 MDM2Q00987 491 aaPredicted RBP20.48■□□□□ 0.87
CPSF4-205ENST00000440514 ZNF577Q9BSK1 485 aa20.48■□□□□ 0.87
CPSF4-205ENST00000440514 SEZ6LQ9BYH1 1024 aa20.48■□□□□ 0.87
CPSF4-205ENST00000440514 TBX21Q9UL17 535 aa20.48■□□□□ 0.87
CPSF4-205ENST00000440514 KIAA0355O15063 1070 aa20.47■□□□□ 0.87
CPSF4-205ENST00000440514 LETM2Q2VYF4 491 aa20.47■□□□□ 0.87
CPSF4-205ENST00000440514 H3BRB1 525 aa20.46■□□□□ 0.87
CPSF4-205ENST00000440514 MSH4O15457 936 aa20.46■□□□□ 0.87
CPSF4-205ENST00000440514 DHX15O43143 795 aaKnown RBP20.46■□□□□ 0.87
CPSF4-205ENST00000440514 CCNE2O96020 404 aa20.46■□□□□ 0.87
CPSF4-205ENST00000440514 ACTR2P61160 394 aa20.46■□□□□ 0.87
CPSF4-205ENST00000440514 NEK8Q86SG6 692 aa20.46■□□□□ 0.87
CPSF4-205ENST00000440514 C7orf31Q8N865 590 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms