RNA–Protein interactions for RNA: ENST00000439128.6

NEK1-201, Transcript of NIMA related kinase 1, humanhuman

TSL 1 (best) BASIC

Gene NEK1, Length 5,653 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-201ENST00000439128 USP17L6PQ6QN14 398 aa13.19□□□□□ -0.3
NEK1-201ENST00000439128 PSMB7Q99436 277 aa13.19□□□□□ -0.3
NEK1-201ENST00000439128 FOXP1Q9H334 677 aaPredicted RBP13.19□□□□□ -0.3
NEK1-201ENST00000439128 GBA2Q9HCG7 927 aaPredicted RBP13.19□□□□□ -0.3
NEK1-201ENST00000439128 PLEKHA8P1O95397 391 aa13.19□□□□□ -0.3
NEK1-201ENST00000439128 FDX1P10109 184 aa13.19□□□□□ -0.3
NEK1-201ENST00000439128 RINT1Q6NUQ1 792 aa13.19□□□□□ -0.3
NEK1-201ENST00000439128 FAM186BQ8IYM0 893 aa13.19□□□□□ -0.3
NEK1-201ENST00000439128 GDAP1Q8TB36 358 aa13.19□□□□□ -0.3
NEK1-201ENST00000439128 CCDC110Q8TBZ0 833 aa13.19□□□□□ -0.3
NEK1-201ENST00000439128 USP28Q96RU2 1077 aa13.19□□□□□ -0.3
NEK1-201ENST00000439128 NCAPGQ9BPX3 1015 aa13.19□□□□□ -0.3
NEK1-201ENST00000439128 UBN1Q9NPG3 1134 aa13.19□□□□□ -0.3
NEK1-201ENST00000439128 CPB1P15086 417 aa13.19□□□□□ -0.3
NEK1-201ENST00000439128 CIITAP33076 1130 aa13.19□□□□□ -0.3
NEK1-201ENST00000439128 KAZNQ674X7 775 aa13.19□□□□□ -0.3
NEK1-201ENST00000439128 TTC30BQ8N4P2 665 aa13.19□□□□□ -0.3
NEK1-201ENST00000439128 MAIP1Q8WWC4 291 aa13.19□□□□□ -0.3
NEK1-201ENST00000439128 AK8Q96MA6 479 aa13.19□□□□□ -0.3
NEK1-201ENST00000439128 MTRQ99707 1265 aa13.19□□□□□ -0.3
NEK1-201ENST00000439128 LSG1Q9H089 658 aaKnown RBP13.19□□□□□ -0.3
NEK1-201ENST00000439128 CLIC4Q9Y696 253 aa13.19□□□□□ -0.3
NEK1-201ENST00000439128 OPA1O60313 960 aa13.19□□□□□ -0.3
NEK1-201ENST00000439128 OR6B2Q6IFH4 312 aa13.19□□□□□ -0.3
NEK1-201ENST00000439128 GTF3C2Q8WUA4 911 aaPredicted RBP13.19□□□□□ -0.3
NEK1-201ENST00000439128 TBC1D22BQ9NU19 505 aa13.19□□□□□ -0.3
NEK1-201ENST00000439128 MKRN1Q9UHC7 482 aaKnown RBP13.19□□□□□ -0.3
NEK1-201ENST00000439128 MED7O43513 233 aa13.18□□□□□ -0.3
NEK1-201ENST00000439128 ZNF827Q17R98 1081 aa13.18□□□□□ -0.3
NEK1-201ENST00000439128 EXOC3L4Q17RC7 722 aa13.18□□□□□ -0.3
NEK1-201ENST00000439128 PIGOQ8TEQ8 1089 aa13.18□□□□□ -0.3
NEK1-201ENST00000439128 ANAPC4Q9UJX5 808 aa13.18□□□□□ -0.3
NEK1-201ENST00000439128 DAGLAQ9Y4D2 1042 aa13.18□□□□□ -0.3
NEK1-201ENST00000439128 GLI2P10070 1586 aa13.18□□□□□ -0.3
NEK1-201ENST00000439128 KRT33BQ14525 404 aa13.18□□□□□ -0.3
NEK1-201ENST00000439128 RPS6KA1Q15418 735 aa13.18□□□□□ -0.3
NEK1-201ENST00000439128 ZNF568Q3ZCX4 644 aa13.18□□□□□ -0.3
NEK1-201ENST00000439128 SLFN12LQ6IEE8 588 aa13.18□□□□□ -0.3
NEK1-201ENST00000439128 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.18□□□□□ -0.3
NEK1-201ENST00000439128 TMEM39BQ9GZU3 492 aa13.18□□□□□ -0.3
NEK1-201ENST00000439128 GABBR1Q9UBS5 961 aa13.18□□□□□ -0.3
NEK1-201ENST00000439128 CNTNAP4Q9C0A0 1308 aa13.18□□□□□ -0.3
NEK1-201ENST00000439128 GOLGA8CPA6NN73 597 aa13.18□□□□□ -0.3
NEK1-201ENST00000439128 PLA2G4BP0C869 781 aa13.18□□□□□ -0.3
NEK1-201ENST00000439128 ZNF853P0CG23 659 aa13.18□□□□□ -0.3
NEK1-201ENST00000439128 EPHB1P54762 984 aa13.18□□□□□ -0.3
NEK1-201ENST00000439128 KLHL7Q8IXQ5 586 aa13.18□□□□□ -0.3
NEK1-201ENST00000439128 KATNAL1Q9BW62 490 aa13.18□□□□□ -0.3
NEK1-201ENST00000439128 USP42Q9H9J4 1324 aaKnown RBP13.18□□□□□ -0.3
NEK1-201ENST00000439128 CLTCL1P53675 1640 aa13.18□□□□□ -0.3
NEK1-201ENST00000439128 CC2D1AQ6P1N0 951 aaPredicted RBP13.18□□□□□ -0.3
NEK1-201ENST00000439128 MAP7D3Q8IWC1 876 aa13.18□□□□□ -0.3
NEK1-201ENST00000439128 PSPC1Q8WXF1 523 aaKnown RBP13.18□□□□□ -0.3
NEK1-201ENST00000439128 IPO11Q9UI26 975 aaKnown RBP13.18□□□□□ -0.3
NEK1-201ENST00000439128 AMFRQ9UKV5 643 aa13.18□□□□□ -0.3
NEK1-201ENST00000439128 AKR1B1P15121 316 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 PRELPP51888 382 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 KRT76Q01546 638 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 PTPROQ16827 1216 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 SYT10Q6XYQ8 523 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 RFX6Q8HWS3 928 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 EEF2KMTQ96G04 330 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 MAGEF1Q9HAY2 307 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 SFI1A8K8P3 1242 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 H7C0C1 242 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 HUS1O60921 280 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 RECQLP46063 649 aaPredicted RBP13.17□□□□□ -0.3
NEK1-201ENST00000439128 ATP5OP48047 213 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 MCM6Q14566 821 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 TMED8Q6PL24 325 aaPredicted RBP13.17□□□□□ -0.3
NEK1-201ENST00000439128 RNF180Q86T96 592 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 VPS52Q8N1B4 723 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 STAP2Q9UGK3 403 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 COBLO75128 1261 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 LONRF2Q1L5Z9 754 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 ADCK5Q3MIX3 580 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 AFG1LQ8WV93 481 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 ACTN1P12814 892 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 CCDC6Q16204 474 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 SLFNL1Q499Z3 407 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 LGSNQ5TDP6 509 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 BEST2Q8NFU1 509 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 NKIRAS1Q9NYS0 192 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 SPDYE2BA6NHP3 402 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 CLDN3O15551 220 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 TBC1D8O95759 1140 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 SPDYE6P0CI01 402 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 SAT1P21673 171 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 LDHDQ86WU2 507 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 CCNYQ8ND76 341 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 ZNF653Q96CK0 615 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 OSBPL5Q9H0X9 879 aaPredicted RBP13.17□□□□□ -0.3
NEK1-201ENST00000439128 VPS37BQ9H9H4 285 aa13.17□□□□□ -0.3
NEK1-201ENST00000439128 TPD52P55327 224 aaPredicted RBP13.16□□□□□ -0.3
NEK1-201ENST00000439128 NR5A1Q13285 461 aa13.16□□□□□ -0.3
NEK1-201ENST00000439128 CTAGE3PQ8IX95 158 aa13.16□□□□□ -0.3
NEK1-201ENST00000439128 BHMT2Q9H2M3 363 aa13.16□□□□□ -0.3
NEK1-201ENST00000439128 CDC42EP5Q6NZY7 148 aa13.16□□□□□ -0.3
NEK1-201ENST00000439128 C8orf74Q6P047 294 aa13.16□□□□□ -0.3
NEK1-201ENST00000439128 KCNV1Q6PIU1 500 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms