RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 MYD88Q99836 296 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 GINS4Q9BRT9 223 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 GPBP1L1Q9HC44 474 aaPredicted RBP7.74□□□□□ -1.17
VPS53-204ENST00000437048 ANKFY1Q9P2R3 1169 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 RCOR1Q9UKL0 485 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 SMIM23A6NLE4 172 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 MRPS15P82914 257 aaKnown RBP7.74□□□□□ -1.17
VPS53-204ENST00000437048 INPP5AQ14642 412 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 DACT3Q96B18 629 aaPredicted RBP7.74□□□□□ -1.17
VPS53-204ENST00000437048 ZSWIM6Q9HCJ5 1215 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 CHMP2BQ9UQN3 213 aa7.74□□□□□ -1.17
VPS53-204ENST00000437048 EXOC3O60645 756 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 CDHR1Q96JP9 859 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 TLK1Q9UKI8 766 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 MT-ND3P03897 115 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 PCSK2P16519 638 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 EEF1B2P24534 225 aaKnown RBP7.73□□□□□ -1.17
VPS53-204ENST00000437048 PSMD6Q15008 389 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 KRT27Q7Z3Y8 459 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 EIF4G3O43432 1585 aaKnown RBP7.73□□□□□ -1.17
VPS53-204ENST00000437048 CLCN6P51797 869 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 ATP6V1G3Q96LB4 118 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 TMEM63CQ9P1W3 806 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 TNNC2P02585 160 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 CDC27P30260 824 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 EPS8Q12929 822 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 TAF1BQ53T94 588 aaPredicted RBP7.73□□□□□ -1.17
VPS53-204ENST00000437048 CEP95Q96GE4 821 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 BRD8Q9H0E9 1235 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 NHEJ1Q9H9Q4 299 aaPredicted RBP7.73□□□□□ -1.17
VPS53-204ENST00000437048 RUNX1T1Q06455 604 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 ESCO1Q5FWF5 840 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 KIAA1586Q9HCI6 787 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 PNMA8CA0A1B0GUJ8 204 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 SLC27A2O14975 620 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 MYBL1P10243 752 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 RASGRF1Q13972 1273 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 PUM3Q15397 648 aaKnown RBP7.73□□□□□ -1.17
VPS53-204ENST00000437048 HERC4Q5GLZ8 1057 aaPredicted RBP7.73□□□□□ -1.17
VPS53-204ENST00000437048 RRAGAQ7L523 313 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 TJP3O95049 919 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 ARHGEF5Q12774 1597 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 CWF19L2Q2TBE0 894 aaKnown RBP7.73□□□□□ -1.17
VPS53-204ENST00000437048 SH3GL2Q99962 352 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 CCDC8Q9H0W5 538 aaPredicted RBP7.73□□□□□ -1.17
VPS53-204ENST00000437048 STX18Q9P2W9 335 aaKnown RBP7.73□□□□□ -1.17
VPS53-204ENST00000437048 SNTNA6NMZ2 147 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 CDH16O75309 829 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 IL10P22301 178 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 LRMPQ12912 555 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 GSNP06396 782 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 MFAP3P55082 362 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 DR1Q01658 176 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 PITPNM3Q9BZ71 974 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 COPB1P53618 953 aaKnown RBP7.73□□□□□ -1.17
VPS53-204ENST00000437048 KRT81Q14533 505 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 SUGP1Q8IWZ8 645 aaKnown RBP7.73□□□□□ -1.17
VPS53-204ENST00000437048 RNF169Q8NCN4 708 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 ROPN1BQ9BZX4 212 aaPredicted RBP7.73□□□□□ -1.17
VPS53-204ENST00000437048 VPS16Q9H269 839 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 ROPN1Q9HAT0 212 aaPredicted RBP7.73□□□□□ -1.17
VPS53-204ENST00000437048 TUBGCP4Q9UGJ1 667 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 SAMD9LQ8IVG5 1584 aa7.73□□□□□ -1.17
VPS53-204ENST00000437048 SAC3D1A6NKF1 404 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 FAM25AB3EWG3 89 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 FAM25CB3EWG5 89 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 FAM25GB3EWG6 89 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 KIAA0825Q8IV33 1275 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 RWDD3Q9Y3V2 267 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 WDR7Q9Y4E6 1490 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 H2AFYO75367 372 aaKnown RBP7.72□□□□□ -1.17
VPS53-204ENST00000437048 SLFN14P0C7P3 912 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 CYP2C19P33261 490 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 VAMP4O75379 141 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 KBTBD12Q3ZCT8 623 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 CASC4Q6P4E1 433 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 QKIQ96PU8 341 aaKnown RBP eCLIP7.72□□□□□ -1.17
VPS53-204ENST00000437048 SNUPNO95149 360 aaKnown RBP7.72□□□□□ -1.17
VPS53-204ENST00000437048 KRT14P02533 472 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 TMEM259Q4ZIN3 620 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 KIAA2013Q8IYS2 634 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 ALDH8A1Q9H2A2 487 aaPredicted RBP7.72□□□□□ -1.17
VPS53-204ENST00000437048 TAF1DQ9H5J8 278 aaPredicted RBP7.72□□□□□ -1.17
VPS53-204ENST00000437048 STK36Q9NRP7 1315 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 PDE1BQ01064 536 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 PTPN21Q16825 1174 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 LRRC43Q8N309 656 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 NDEL1Q9GZM8 345 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 HESX1Q9UBX0 185 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 STAT4Q14765 748 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 NUMA1Q14980 2115 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 LRRC8EQ6NSJ5 796 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 PARD6BQ9BYG5 372 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 EHD2Q9NZN4 543 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 CNGA3Q16281 694 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 AKNAD1Q5T1N1 836 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 EML4Q9HC35 981 aaKnown RBP7.72□□□□□ -1.17
VPS53-204ENST00000437048 ABCC4O15439 1325 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 O00370 1275 aa7.72□□□□□ -1.17
VPS53-204ENST00000437048 KLHL41O60662 606 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms