RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 GTF2IP78347 998 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 COASYQ13057 564 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 PDXDC1Q6P996 788 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 CEP57Q86XR8 500 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 FNBP4Q8N3X1 1017 aaPredicted RBP13.72□□□□□ -0.21
CDH3-202ENST00000429102 VIPAS39Q9H9C1 493 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 AMACRQ9UHK6 382 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 TRPM3Q9HCF6 1732 aaPredicted RBP13.72□□□□□ -0.21
CDH3-202ENST00000429102 TARSL2A2RTX5 802 aaKnown RBP13.72□□□□□ -0.21
CDH3-202ENST00000429102 ECM2O94769 699 aaPredicted RBP13.72□□□□□ -0.21
CDH3-202ENST00000429102 UBXN2AP68543 259 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 HDLBPQ00341 1268 aaKnown RBP13.72□□□□□ -0.21
CDH3-202ENST00000429102 RETREG2Q8NC44 543 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 ERGIC2Q96RQ1 377 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 C7orf25Q9BPX7 421 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 COL4A3BPQ9Y5P4 624 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 SLIT2O94813 1529 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 PALM3A6NDB9 673 aaPredicted RBP13.72□□□□□ -0.21
CDH3-202ENST00000429102 ZNF233A6NK53 670 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 USP17L10C9JJH3 530 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 CLSTN1O94985 981 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 ITGA4P13612 1032 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 AKR1B1P15121 316 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 USP8P40818 1118 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 ACTN3Q08043 901 aaPredicted RBP13.72□□□□□ -0.21
CDH3-202ENST00000429102 ZNF211Q13398 564 aaPredicted RBP13.72□□□□□ -0.21
CDH3-202ENST00000429102 RPS6KA1Q15418 735 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 ASIC2Q16515 512 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 CENPPQ6IPU0 288 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 CHADLQ6NUI6 762 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 UNC13DQ70J99 1090 aa13.72□□□□□ -0.21
CDH3-202ENST00000429102 JPH2Q9BR39 696 aaPredicted RBP13.72□□□□□ -0.21
CDH3-202ENST00000429102 A0A087WUV0 522 aaPredicted RBP13.71□□□□□ -0.21
CDH3-202ENST00000429102 NR1D1P20393 614 aa13.71□□□□□ -0.21
CDH3-202ENST00000429102 NR2F2P24468 414 aa13.71□□□□□ -0.21
CDH3-202ENST00000429102 TAX1BP1Q86VP1 789 aa13.71□□□□□ -0.21
CDH3-202ENST00000429102 ZMYND12Q9H0C1 365 aa13.71□□□□□ -0.21
CDH3-202ENST00000429102 PKD2L1Q9P0L9 805 aa13.71□□□□□ -0.21
CDH3-202ENST00000429102 CTNNA1P35221 906 aaKnown RBP13.71□□□□□ -0.21
CDH3-202ENST00000429102 RBM5P52756 815 aaKnown RBP eCLIP13.71□□□□□ -0.21
CDH3-202ENST00000429102 IFFO1Q0D2I5 559 aa13.71□□□□□ -0.21
CDH3-202ENST00000429102 EFCAB13Q8IY85 973 aa13.71□□□□□ -0.21
CDH3-202ENST00000429102 U2AF1L4Q8WU68 220 aaKnown RBP13.71□□□□□ -0.21
CDH3-202ENST00000429102 PKD1L3Q7Z443 1732 aa13.71□□□□□ -0.21
CDH3-202ENST00000429102 COL4A1P02462 1669 aa13.71□□□□□ -0.22
CDH3-202ENST00000429102 G3V3G9 751 aa13.71□□□□□ -0.22
CDH3-202ENST00000429102 BUB1BO60566 1050 aaPredicted RBP13.71□□□□□ -0.22
CDH3-202ENST00000429102 FKBP3Q00688 224 aaKnown RBP13.71□□□□□ -0.22
CDH3-202ENST00000429102 PRR16Q569H4 304 aa13.71□□□□□ -0.22
CDH3-202ENST00000429102 DCAF8Q5TAQ9 597 aa13.71□□□□□ -0.22
CDH3-202ENST00000429102 BAP1Q92560 729 aa13.71□□□□□ -0.22
CDH3-202ENST00000429102 RAB34Q9BZG1 259 aa13.71□□□□□ -0.22
CDH3-202ENST00000429102 GGT7Q9UJ14 662 aa13.71□□□□□ -0.22
CDH3-202ENST00000429102 FRMD3A2A2Y4 597 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 GOLGA8KD6RF30 607 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 FGFR1OPO95684 399 aaKnown RBP13.7□□□□□ -0.22
CDH3-202ENST00000429102 PDE6BP35913 854 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 FLT3P36888 993 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 CASP5P51878 434 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 KCNA1Q09470 495 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 ARHGAP44Q17R89 818 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 MDM1Q8TC05 714 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 RAD54LQ92698 747 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 ELMO3Q96BJ8 720 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 SPEF2Q9C093 1822 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 NID2Q14112 1375 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 EP400Q96L91 3159 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 MYH7P12883 1935 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 DAPK3O43293 454 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 PSMC6P62333 389 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 PTK2Q05397 1052 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 KCNH2Q12809 1159 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 PAK2Q13177 524 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 DAAM2Q86T65 1068 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 MMGT1Q8N4V1 131 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 SH2D3AQ9BRG2 576 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 NOVA2Q9UNW9 492 aaKnown RBP13.7□□□□□ -0.22
CDH3-202ENST00000429102 GLI3P10071 1580 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 GOLGA6L7A0A1B0GV03 622 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 KRIT1O00522 736 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 GFPT2O94808 682 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 LSP1P33241 339 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 RFC4P35249 363 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 SLCO1A2P46721 670 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 SF3B3Q15393 1217 aaKnown RBP13.7□□□□□ -0.22
CDH3-202ENST00000429102 DOK7Q18PE1 504 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 SCLT1Q96NL6 688 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 CD248Q9HCU0 757 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 EMILIN3Q9NT22 766 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 MYH6P13533 1939 aa13.7□□□□□ -0.22
CDH3-202ENST00000429102 RSPH10B2B2RC85 870 aa13.69□□□□□ -0.22
CDH3-202ENST00000429102 M0R2N6 131 aa13.69□□□□□ -0.22
CDH3-202ENST00000429102 RSPH10BP0C881 870 aa13.69□□□□□ -0.22
CDH3-202ENST00000429102 HNRNPH1P31943 449 aaKnown RBP13.69□□□□□ -0.22
CDH3-202ENST00000429102 DHX9Q08211 1270 aaKnown RBP13.69□□□□□ -0.22
CDH3-202ENST00000429102 ADCY1Q08828 1119 aa13.69□□□□□ -0.22
CDH3-202ENST00000429102 ANKRD2Q9GZV1 360 aa13.69□□□□□ -0.22
CDH3-202ENST00000429102 ATP8A1Q9Y2Q0 1164 aa13.69□□□□□ -0.22
CDH3-202ENST00000429102 DCDC2CA8MYV0 355 aa13.69□□□□□ -0.22
CDH3-202ENST00000429102 PLA2G4BP0C869 781 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms