RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 GJD2Q9UKL4 321 aa16.56■□□□□ 0.24
USP4-203ENST00000415188 MFAP3LO75121 409 aa16.55■□□□□ 0.24
USP4-203ENST00000415188 PDHBP11177 359 aa16.55■□□□□ 0.24
USP4-203ENST00000415188 NAALADL2Q58DX5 795 aa16.55■□□□□ 0.24
USP4-203ENST00000415188 REXO1Q8N1G1 1221 aaKnown RBP16.55■□□□□ 0.24
USP4-203ENST00000415188 U2AF1L4Q8WU68 220 aaKnown RBP16.55■□□□□ 0.24
USP4-203ENST00000415188 C12orf42Q96LP6 360 aa16.55■□□□□ 0.24
USP4-203ENST00000415188 TEX33O43247 280 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 CCDC175P0C221 793 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 GOLGA8HP0CJ92 632 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 EEF1GP26641 437 aaKnown RBP16.54■□□□□ 0.24
USP4-203ENST00000415188 COPB1P53618 953 aaKnown RBP16.54■□□□□ 0.24
USP4-203ENST00000415188 ADKP55263 362 aaKnown RBP16.54■□□□□ 0.24
USP4-203ENST00000415188 AMPD3Q01432 767 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 SEPT2Q15019 361 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 KRT31Q15323 416 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 Q3C1V9 767 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 CABP7Q86V35 215 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 SMYD4Q8IYR2 804 aaPredicted RBP16.54■□□□□ 0.24
USP4-203ENST00000415188 GPRC5AQ8NFJ5 357 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 STAMQ92783 540 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 DHTKD1Q96HY7 919 aaPredicted RBP16.54■□□□□ 0.24
USP4-203ENST00000415188 PAGR1Q9BTK6 254 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 THAP9Q9H5L6 903 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 KCNJ18B7U540 433 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 MPHOSPH10O00566 681 aaKnown RBP16.54■□□□□ 0.24
USP4-203ENST00000415188 PSMA7O14818 248 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 TTLL1O95922 423 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 GOLGA8FQ08AF8 430 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 GOLGA8DPQ0D2H9 430 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 TRIM32Q13049 653 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 KCNJ12Q14500 433 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 COBLL1Q53SF7 1204 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 TCP11X2Q5H9J9 407 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 UBE2Q1Q7Z7E8 422 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 UBE2Q2Q8WVN8 375 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 DEFB118Q96PH6 123 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 PIGSQ96S52 555 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 C7orf25Q9BPX7 421 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 KIAA1683Q9H0B3 1180 aa16.54■□□□□ 0.24
USP4-203ENST00000415188 MYH4Q9Y623 1939 aa16.53■□□□□ 0.24
USP4-203ENST00000415188 N4BP3O15049 544 aa16.53■□□□□ 0.24
USP4-203ENST00000415188 KLRC4O43908 158 aa16.53■□□□□ 0.24
USP4-203ENST00000415188 SGPL1O95470 568 aa16.53■□□□□ 0.24
USP4-203ENST00000415188 VCAM1P19320 739 aa16.53■□□□□ 0.24
USP4-203ENST00000415188 PRCPP42785 496 aa16.53■□□□□ 0.24
USP4-203ENST00000415188 ADCY7P51828 1080 aa16.53■□□□□ 0.24
USP4-203ENST00000415188 USP14P54578 494 aa16.53■□□□□ 0.24
USP4-203ENST00000415188 ERVK-9P63128 1117 aa16.53■□□□□ 0.24
USP4-203ENST00000415188 ERVK-24P63145 666 aa16.53■□□□□ 0.24
USP4-203ENST00000415188 RBL2Q08999 1139 aa16.53■□□□□ 0.24
USP4-203ENST00000415188 KMT5BQ4FZB7 885 aa16.53■□□□□ 0.24
USP4-203ENST00000415188 TMTC1Q8IUR5 882 aa16.53■□□□□ 0.24
USP4-203ENST00000415188 GIMAP8Q8ND71 665 aaPredicted RBP16.53■□□□□ 0.24
USP4-203ENST00000415188 CCDC17Q96LX7 622 aa16.53■□□□□ 0.24
USP4-203ENST00000415188 PORCNQ9H237 461 aa16.53■□□□□ 0.24
USP4-203ENST00000415188 MTMR7Q9Y216 660 aa16.53■□□□□ 0.24
USP4-203ENST00000415188 PLXNB2O15031 1838 aa16.52■□□□□ 0.24
USP4-203ENST00000415188 A0A1W2PQC6 194 aa16.52■□□□□ 0.23
USP4-203ENST00000415188 A0A1W2PRG0 241 aa16.52■□□□□ 0.23
USP4-203ENST00000415188 BICDL2A1A5D9 508 aa16.52■□□□□ 0.23
USP4-203ENST00000415188 USP17L15C9J2P7 530 aa16.52■□□□□ 0.23
USP4-203ENST00000415188 USP17L13C9JLJ4 530 aa16.52■□□□□ 0.23
USP4-203ENST00000415188 USP17L11C9JVI0 530 aa16.52■□□□□ 0.23
USP4-203ENST00000415188 USP17L18D6R9N7 530 aa16.52■□□□□ 0.23
USP4-203ENST00000415188 USP17L22D6RA61 530 aa16.52■□□□□ 0.23
USP4-203ENST00000415188 USP17L17D6RBQ6 530 aa16.52■□□□□ 0.23
USP4-203ENST00000415188 USP17L19D6RCP7 530 aa16.52■□□□□ 0.23
USP4-203ENST00000415188 USP17L20D6RJB6 530 aa16.52■□□□□ 0.23
USP4-203ENST00000415188 CCNT1O60563 726 aaKnown RBP16.52■□□□□ 0.23
USP4-203ENST00000415188 CNMDO75829 334 aa16.52■□□□□ 0.23
USP4-203ENST00000415188 CYP2B6P20813 491 aa16.52■□□□□ 0.23
USP4-203ENST00000415188 USP17L24Q0WX57 530 aa16.52■□□□□ 0.23
USP4-203ENST00000415188 LETM2Q2VYF4 491 aa16.52■□□□□ 0.23
USP4-203ENST00000415188 GPATCH4Q5T3I0 446 aaKnown RBP16.52■□□□□ 0.23
USP4-203ENST00000415188 CATSPERGQ6ZRH7 1159 aa16.52■□□□□ 0.23
USP4-203ENST00000415188 CALML4Q96GE6 196 aa16.52■□□□□ 0.23
USP4-203ENST00000415188 NAP1L4Q99733 375 aaKnown RBP16.52■□□□□ 0.23
USP4-203ENST00000415188 RAB34Q9BZG1 259 aa16.52■□□□□ 0.23
USP4-203ENST00000415188 GLT8D2Q9H1C3 349 aa16.52■□□□□ 0.23
USP4-203ENST00000415188 PAK6Q9NQU5 681 aaPredicted RBP16.52■□□□□ 0.23
USP4-203ENST00000415188 STK17AQ9UEE5 414 aa16.52■□□□□ 0.23
USP4-203ENST00000415188 GDAQ9Y2T3 454 aa16.52■□□□□ 0.23
USP4-203ENST00000415188 PNMA6FA0A0J9YX94 578 aa16.51■□□□□ 0.23
USP4-203ENST00000415188 H0YGN5 161 aa16.51■□□□□ 0.23
USP4-203ENST00000415188 SLC26A4O43511 780 aa16.51■□□□□ 0.23
USP4-203ENST00000415188 FARP2O94887 1054 aaPredicted RBP16.51■□□□□ 0.23
USP4-203ENST00000415188 HMGCRP04035 888 aa16.51■□□□□ 0.23
USP4-203ENST00000415188 PLCG1P19174 1290 aa16.51■□□□□ 0.23
USP4-203ENST00000415188 CASQ1P31415 396 aa16.51■□□□□ 0.23
USP4-203ENST00000415188 FXR2P51116 673 aaKnown RBP eCLIP16.51■□□□□ 0.23
USP4-203ENST00000415188 ZNF543Q08ER8 600 aa16.51■□□□□ 0.23
USP4-203ENST00000415188 TUBB2AQ13885 445 aa16.51■□□□□ 0.23
USP4-203ENST00000415188 TMEM266Q2M3C6 531 aa16.51■□□□□ 0.23
USP4-203ENST00000415188 TOGARAM2Q6ZUX3 1019 aa16.51■□□□□ 0.23
USP4-203ENST00000415188 CLEC10AQ8IUN9 316 aa16.51■□□□□ 0.23
USP4-203ENST00000415188 FAM114A1Q8IWE2 563 aa16.51■□□□□ 0.23
USP4-203ENST00000415188 TBCKQ8TEA7 893 aa16.51■□□□□ 0.23
USP4-203ENST00000415188 GTF3C2Q8WUA4 911 aaPredicted RBP16.51■□□□□ 0.23
USP4-203ENST00000415188 TRIB2Q92519 343 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms