RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 MEIS1O00470 390 aa18.81■□□□□ 0.6
PHRF1-202ENST00000413872 ORC4O43929 436 aa18.81■□□□□ 0.6
PHRF1-202ENST00000413872 MXI1P50539 228 aa18.81■□□□□ 0.6
PHRF1-202ENST00000413872 TSC1Q92574 1164 aa18.81■□□□□ 0.6
PHRF1-202ENST00000413872 DDX41Q9UJV9 622 aaKnown RBP18.81■□□□□ 0.6
PHRF1-202ENST00000413872 K7ERI5 159 aa18.81■□□□□ 0.6
PHRF1-202ENST00000413872 ETF1P62495 437 aaKnown RBP18.81■□□□□ 0.6
PHRF1-202ENST00000413872 BFSP1Q12934 665 aa18.81■□□□□ 0.6
PHRF1-202ENST00000413872 RSRC2Q7L4I2 434 aaKnown RBP18.81■□□□□ 0.6
PHRF1-202ENST00000413872 MAN1B1Q9UKM7 699 aa18.81■□□□□ 0.6
PHRF1-202ENST00000413872 TFAMQ00059 246 aaKnown RBP18.8■□□□□ 0.6
PHRF1-202ENST00000413872 EN1Q05925 392 aaPredicted RBP18.8■□□□□ 0.6
PHRF1-202ENST00000413872 PRPF38AQ8NAV1 312 aaKnown RBP18.8■□□□□ 0.6
PHRF1-202ENST00000413872 KRT12Q99456 494 aa18.8■□□□□ 0.6
PHRF1-202ENST00000413872 WDR64B1ANS9 1081 aa18.8■□□□□ 0.6
PHRF1-202ENST00000413872 ADCY8P40145 1251 aa18.8■□□□□ 0.6
PHRF1-202ENST00000413872 MTMR1Q13613 665 aa18.8■□□□□ 0.6
PHRF1-202ENST00000413872 BRD3Q15059 726 aa18.8■□□□□ 0.6
PHRF1-202ENST00000413872 FRMPD1Q5SYB0 1578 aa18.8■□□□□ 0.6
PHRF1-202ENST00000413872 LRRC8AQ8IWT6 810 aa18.8■□□□□ 0.6
PHRF1-202ENST00000413872 CD163L1Q9NR16 1453 aa18.8■□□□□ 0.6
PHRF1-202ENST00000413872 CIB2O75838 187 aa18.8■□□□□ 0.6
PHRF1-202ENST00000413872 NEDD9Q14511 834 aa18.8■□□□□ 0.6
PHRF1-202ENST00000413872 ELMSAN1Q6PJG2 1045 aa18.8■□□□□ 0.6
PHRF1-202ENST00000413872 LRRC41Q15345 812 aa18.79■□□□□ 0.6
PHRF1-202ENST00000413872 KIAA1841Q6NSI8 718 aa18.79■□□□□ 0.6
PHRF1-202ENST00000413872 NEDD1Q8NHV4 660 aa18.79■□□□□ 0.6
PHRF1-202ENST00000413872 MRPL47Q9HD33 250 aaKnown RBP18.79■□□□□ 0.6
PHRF1-202ENST00000413872 ZNRF3Q9ULT6 936 aa18.79■□□□□ 0.6
PHRF1-202ENST00000413872 CUL4BQ13620 913 aa18.79■□□□□ 0.6
PHRF1-202ENST00000413872 KRT71Q3SY84 523 aa18.79■□□□□ 0.6
PHRF1-202ENST00000413872 MXD3Q9BW11 206 aa18.79■□□□□ 0.6
PHRF1-202ENST00000413872 RPF1Q9H9Y2 349 aaKnown RBP18.79■□□□□ 0.6
PHRF1-202ENST00000413872 GOLGA8CPA6NN73 597 aa18.79■□□□□ 0.6
PHRF1-202ENST00000413872 C10orf76Q5T2E6 689 aa18.79■□□□□ 0.6
PHRF1-202ENST00000413872 STRIP1Q5VSL9 837 aa18.79■□□□□ 0.6
PHRF1-202ENST00000413872 SNRNP48Q6IEG0 339 aaKnown RBP18.79■□□□□ 0.6
PHRF1-202ENST00000413872 ZNF579Q8NAF0 562 aaKnown RBP18.79■□□□□ 0.6
PHRF1-202ENST00000413872 CEP95Q96GE4 821 aa18.79■□□□□ 0.6
PHRF1-202ENST00000413872 DESI2Q9BSY9 194 aa18.79■□□□□ 0.6
PHRF1-202ENST00000413872 DDX23Q9BUQ8 820 aaKnown RBP18.79■□□□□ 0.6
PHRF1-202ENST00000413872 SLC12A6Q9UHW9 1150 aa18.79■□□□□ 0.6
PHRF1-202ENST00000413872 SFNP31947 248 aa18.79■□□□□ 0.6
PHRF1-202ENST00000413872 IFRD2Q12894 506 aaPredicted RBP18.79■□□□□ 0.6
PHRF1-202ENST00000413872 BSPRYQ5W0U4 402 aa18.79■□□□□ 0.6
PHRF1-202ENST00000413872 CTAGE3PQ8IX95 158 aa18.79■□□□□ 0.6
PHRF1-202ENST00000413872 ZNF34Q8IZ26 560 aa18.79■□□□□ 0.6
PHRF1-202ENST00000413872 KIAA1586Q9HCI6 787 aa18.79■□□□□ 0.6
PHRF1-202ENST00000413872 MKRN1Q9UHC7 482 aaKnown RBP18.79■□□□□ 0.6
PHRF1-202ENST00000413872 NEDD4P46934 1319 aa18.78■□□□□ 0.6
PHRF1-202ENST00000413872 ARMCX2Q7L311 632 aa18.78■□□□□ 0.6
PHRF1-202ENST00000413872 ENAHQ8N8S7 591 aaPredicted RBP18.78■□□□□ 0.6
PHRF1-202ENST00000413872 PFDN4Q9NQP4 134 aa18.78■□□□□ 0.6
PHRF1-202ENST00000413872 RNF146Q9NTX7 359 aa18.78■□□□□ 0.6
PHRF1-202ENST00000413872 BUB1O43683 1085 aa18.78■□□□□ 0.6
PHRF1-202ENST00000413872 CASP14P31944 242 aa18.78■□□□□ 0.6
PHRF1-202ENST00000413872 MYRIPQ8NFW9 859 aa18.78■□□□□ 0.6
PHRF1-202ENST00000413872 BHMT2Q9H2M3 363 aa18.78■□□□□ 0.6
PHRF1-202ENST00000413872 HOXD10P28358 340 aa18.78■□□□□ 0.6
PHRF1-202ENST00000413872 PRELPP51888 382 aa18.78■□□□□ 0.6
PHRF1-202ENST00000413872 MNAT1P51948 309 aa18.78■□□□□ 0.6
PHRF1-202ENST00000413872 ELF2Q15723 593 aa18.78■□□□□ 0.6
PHRF1-202ENST00000413872 FASTKD5Q7L8L6 764 aaKnown RBP18.78■□□□□ 0.6
PHRF1-202ENST00000413872 MB21D2Q8IYB1 491 aaPredicted RBP18.78■□□□□ 0.6
PHRF1-202ENST00000413872 PAGE5Q96GU1 130 aa18.78■□□□□ 0.6
PHRF1-202ENST00000413872 ZMYND15Q9H091 742 aa18.78■□□□□ 0.6
PHRF1-202ENST00000413872 IPO11Q9UI26 975 aaKnown RBP18.78■□□□□ 0.6
PHRF1-202ENST00000413872 PASKQ96RG2 1323 aa18.78■□□□□ 0.6
PHRF1-202ENST00000413872 SNAP23O00161 211 aa18.77■□□□□ 0.6
PHRF1-202ENST00000413872 PRPSAP1Q14558 356 aa18.77■□□□□ 0.6
PHRF1-202ENST00000413872 Q3C1V9 767 aa18.77■□□□□ 0.6
PHRF1-202ENST00000413872 DPCR1Q3MIW9 517 aa18.77■□□□□ 0.6
PHRF1-202ENST00000413872 NME8Q8N427 588 aa18.77■□□□□ 0.6
PHRF1-202ENST00000413872 ATP6V0A4Q9HBG4 840 aa18.77■□□□□ 0.6
PHRF1-202ENST00000413872 CACNB1Q02641 598 aaPredicted RBP18.77■□□□□ 0.6
PHRF1-202ENST00000413872 MKRN3Q13064 507 aaKnown RBP18.77■□□□□ 0.6
PHRF1-202ENST00000413872 F5H6K3 240 aa18.77■□□□□ 0.6
PHRF1-202ENST00000413872 NDUFAB1O14561 156 aa18.77■□□□□ 0.6
PHRF1-202ENST00000413872 CLIC2O15247 247 aa18.77■□□□□ 0.6
PHRF1-202ENST00000413872 U2AF2P26368 475 aaKnown RBP eCLIP18.77■□□□□ 0.6
PHRF1-202ENST00000413872 KLRC3Q07444 240 aa18.77■□□□□ 0.6
PHRF1-202ENST00000413872 FAM149B1Q96BN6 582 aa18.77■□□□□ 0.6
PHRF1-202ENST00000413872 PPRC1Q5VV67 1664 aaKnown RBP18.77■□□□□ 0.59
PHRF1-202ENST00000413872 SPP2Q13103 211 aa18.77■□□□□ 0.59
PHRF1-202ENST00000413872 ZNF148Q9UQR1 794 aa18.77■□□□□ 0.59
PHRF1-202ENST00000413872 AFG3L2Q9Y4W6 797 aa18.77■□□□□ 0.59
PHRF1-202ENST00000413872 MUM1L1Q5H9M0 696 aa18.77■□□□□ 0.59
PHRF1-202ENST00000413872 TBC1D16Q8TBP0 767 aa18.77■□□□□ 0.59
PHRF1-202ENST00000413872 ZNF653Q96CK0 615 aa18.77■□□□□ 0.59
PHRF1-202ENST00000413872 PCIF1Q9H4Z3 704 aa18.77■□□□□ 0.59
PHRF1-202ENST00000413872 GCNT4Q9P109 453 aa18.77■□□□□ 0.59
PHRF1-202ENST00000413872 GSG1L2A8MUP6 293 aa18.76■□□□□ 0.59
PHRF1-202ENST00000413872 TNFAIP2Q03169 654 aa18.76■□□□□ 0.59
PHRF1-202ENST00000413872 LRRC4Q9HBW1 653 aa18.76■□□□□ 0.59
PHRF1-202ENST00000413872 NEXMIFQ5QGS0 1516 aa18.76■□□□□ 0.59
PHRF1-202ENST00000413872 INO80Q9ULG1 1556 aaPredicted RBP18.76■□□□□ 0.59
PHRF1-202ENST00000413872 ATF2P15336 505 aa18.76■□□□□ 0.59
PHRF1-202ENST00000413872 CTTNQ14247 550 aaKnown RBP18.76■□□□□ 0.59
PHRF1-202ENST00000413872 UNC13DQ70J99 1090 aa18.76■□□□□ 0.59
PHRF1-202ENST00000413872 PPFIBP2Q8ND30 876 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms