RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ECI1P42126 302 aa8.29□□□□□ -1.08
USP40-202ENST00000409945 PABPC4Q13310 644 aaKnown RBP eCLIP8.29□□□□□ -1.08
USP40-202ENST00000409945 EZH2Q15910 746 aaKnown RBP8.29□□□□□ -1.08
USP40-202ENST00000409945 LONRF2Q1L5Z9 754 aa8.29□□□□□ -1.08
USP40-202ENST00000409945 GAB4Q2WGN9 574 aa8.29□□□□□ -1.08
USP40-202ENST00000409945 CC2D1BQ5T0F9 858 aaKnown RBP8.29□□□□□ -1.08
USP40-202ENST00000409945 DUSP27Q5VZP5 1158 aa8.29□□□□□ -1.08
USP40-202ENST00000409945 USHBP1Q8N6Y0 703 aa8.29□□□□□ -1.08
USP40-202ENST00000409945 SYTL4Q96C24 671 aaPredicted RBP8.29□□□□□ -1.08
USP40-202ENST00000409945 SLC12A9Q9BXP2 914 aa8.29□□□□□ -1.08
USP40-202ENST00000409945 OSBPL1AQ9BXW6 950 aa8.29□□□□□ -1.08
USP40-202ENST00000409945 SLC52A2Q9HAB3 445 aa8.29□□□□□ -1.08
USP40-202ENST00000409945 TNS1Q9HBL0 1735 aaKnown RBP8.29□□□□□ -1.08
USP40-202ENST00000409945 THBDP07204 575 aa8.29□□□□□ -1.08
USP40-202ENST00000409945 NAT2P11245 290 aa8.29□□□□□ -1.08
USP40-202ENST00000409945 TCEA2Q15560 299 aa8.29□□□□□ -1.08
USP40-202ENST00000409945 RTP2Q5QGT7 225 aa8.29□□□□□ -1.08
USP40-202ENST00000409945 FGD2Q7Z6J4 655 aa8.29□□□□□ -1.08
USP40-202ENST00000409945 FILIP1Q7Z7B0 1213 aa8.29□□□□□ -1.08
USP40-202ENST00000409945 UBE2FQ969M7 185 aa8.29□□□□□ -1.08
USP40-202ENST00000409945 CFAP53Q96M91 514 aa8.29□□□□□ -1.08
USP40-202ENST00000409945 DIS3Q9Y2L1 958 aaKnown RBP8.29□□□□□ -1.08
USP40-202ENST00000409945 PLEKHG2Q9H7P9 1386 aa8.29□□□□□ -1.08
USP40-202ENST00000409945 NPC1L1Q9UHC9 1359 aa8.29□□□□□ -1.08
USP40-202ENST00000409945 FKTNO75072 461 aa8.28□□□□□ -1.08
USP40-202ENST00000409945 SNRPB2P08579 225 aaKnown RBP8.28□□□□□ -1.08
USP40-202ENST00000409945 H2AFB1P0C5Y9 115 aa8.28□□□□□ -1.08
USP40-202ENST00000409945 H2AFB2P0C5Z0 115 aa8.28□□□□□ -1.08
USP40-202ENST00000409945 SLC35F1Q5T1Q4 408 aa8.28□□□□□ -1.08
USP40-202ENST00000409945 MBLAC2Q68D91 279 aa8.28□□□□□ -1.08
USP40-202ENST00000409945 KCNT2Q6UVM3 1135 aa8.28□□□□□ -1.08
USP40-202ENST00000409945 PIWIL2Q8TC59 973 aaKnown RBP8.28□□□□□ -1.08
USP40-202ENST00000409945 FRS2Q8WU20 508 aa8.28□□□□□ -1.08
USP40-202ENST00000409945 COPS5Q92905 334 aa8.28□□□□□ -1.08
USP40-202ENST00000409945 CAMKK2Q96RR4 588 aa8.28□□□□□ -1.08
USP40-202ENST00000409945 FOXP3Q9BZS1 431 aa8.28□□□□□ -1.08
USP40-202ENST00000409945 PEAK1Q9H792 1746 aa8.27□□□□□ -1.08
USP40-202ENST00000409945 TMEM82A0PJX8 343 aa8.27□□□□□ -1.09
USP40-202ENST00000409945 FURINP09958 794 aa8.27□□□□□ -1.09
USP40-202ENST00000409945 CANXP27824 592 aaKnown RBP8.27□□□□□ -1.09
USP40-202ENST00000409945 KCNJ6P48051 423 aa8.27□□□□□ -1.09
USP40-202ENST00000409945 MASP1P48740 699 aa8.27□□□□□ -1.09
USP40-202ENST00000409945 AMPD2Q01433 879 aa8.27□□□□□ -1.09
USP40-202ENST00000409945 CNGB1Q14028 1251 aaPredicted RBP8.27□□□□□ -1.09
USP40-202ENST00000409945 EIF4A2Q14240 407 aaKnown RBP8.27□□□□□ -1.09
USP40-202ENST00000409945 TSPYL5Q86VY4 417 aaPredicted RBP8.27□□□□□ -1.09
USP40-202ENST00000409945 SCUBE1Q8IWY4 988 aa8.27□□□□□ -1.09
USP40-202ENST00000409945 SCLYQ96I15 445 aa8.27□□□□□ -1.09
USP40-202ENST00000409945 COX4I2Q96KJ9 171 aa8.27□□□□□ -1.09
USP40-202ENST00000409945 HSP90AB1P08238 724 aaKnown RBP8.27□□□□□ -1.09
USP40-202ENST00000409945 TPP2P29144 1249 aaPredicted RBP8.27□□□□□ -1.09
USP40-202ENST00000409945 CYP27A1Q02318 531 aa8.27□□□□□ -1.09
USP40-202ENST00000409945 GRB10Q13322 594 aa8.27□□□□□ -1.09
USP40-202ENST00000409945 AMOTQ4VCS5 1084 aa8.27□□□□□ -1.09
USP40-202ENST00000409945 PLEKHO1Q53GL0 409 aaPredicted RBP8.27□□□□□ -1.09
USP40-202ENST00000409945 POMZP3Q6PJE2 187 aa8.27□□□□□ -1.09
USP40-202ENST00000409945 DAGLBQ8NCG7 672 aa8.27□□□□□ -1.09
USP40-202ENST00000409945 AP5S1Q9NUS5 200 aa8.27□□□□□ -1.09
USP40-202ENST00000409945 PCDHA11Q9Y5I1 949 aa8.27□□□□□ -1.09
USP40-202ENST00000409945 SBF2Q86WG5 1849 aa8.26□□□□□ -1.09
USP40-202ENST00000409945 RGPD3A6NKT7 1758 aaPredicted RBP8.26□□□□□ -1.09
USP40-202ENST00000409945 RGPD2P0DJD1 1756 aa8.26□□□□□ -1.09
USP40-202ENST00000409945 RGPD4Q7Z3J3 1758 aa8.26□□□□□ -1.09
USP40-202ENST00000409945 CYP26A1O43174 497 aa8.26□□□□□ -1.09
USP40-202ENST00000409945 VAV1P15498 845 aa8.26□□□□□ -1.09
USP40-202ENST00000409945 ZNF460Q14592 562 aa8.26□□□□□ -1.09
USP40-202ENST00000409945 CLEC16AQ2KHT3 1053 aa8.26□□□□□ -1.09
USP40-202ENST00000409945 IFNL2Q8IZJ0 200 aa8.26□□□□□ -1.09
USP40-202ENST00000409945 ZNF655Q8N720 491 aaPredicted RBP8.26□□□□□ -1.09
USP40-202ENST00000409945 TRIM39Q9HCM9 518 aa8.26□□□□□ -1.09
USP40-202ENST00000409945 CYP26B1Q9NR63 512 aa8.26□□□□□ -1.09
USP40-202ENST00000409945 STK32BQ9NY57 414 aa8.26□□□□□ -1.09
USP40-202ENST00000409945 PRR13Q9NZ81 148 aa8.26□□□□□ -1.09
USP40-202ENST00000409945 NHSQ6T4R5 1651 aa8.26□□□□□ -1.09
USP40-202ENST00000409945 MEGF6O75095 1541 aa8.26□□□□□ -1.09
USP40-202ENST00000409945 PITPNM2Q9BZ72 1349 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 A0A087X0B3 334 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 AURKAO14965 403 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 ESR1P03372 595 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 SYPP08247 313 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 LCP1P13796 627 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 MTHFSP49914 203 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 C1orf141Q5JVX7 400 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 UBR7Q8N806 425 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 NPLOC4Q8TAT6 608 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 ATG3Q9NT62 314 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 EBF1Q9UH73 591 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 TCFL5Q9UL49 500 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 NUDCQ9Y266 331 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 IGSF1Q8N6C5 1336 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.25□□□□□ -1.09
USP40-202ENST00000409945 MSCO60682 206 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 RASGRP1O95267 797 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 MED26O95402 600 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 SCG5P05408 212 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 POU3F3P20264 500 aaPredicted RBP8.25□□□□□ -1.09
USP40-202ENST00000409945 R3HDM1Q15032 1099 aaKnown RBP8.25□□□□□ -1.09
USP40-202ENST00000409945 TXNRD1Q16881 649 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 TM4SF20Q53R12 229 aa8.25□□□□□ -1.09
USP40-202ENST00000409945 BRAPQ7Z569 592 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms