RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 PABPC4Q13310 644 aaKnown RBP eCLIP23.02■■□□□ 1.281e-7■■■□□ 14.9
USP39-203ENST00000409470 HERC4Q5GLZ8 1057 aaPredicted RBP23.02■■□□□ 1.28
USP39-203ENST00000409470 MCF2L2Q86YR7 1114 aa23.02■■□□□ 1.28
USP39-203ENST00000409470 SCYL3Q8IZE3 742 aa23.02■■□□□ 1.28
USP39-203ENST00000409470 GLIS3Q8NEA6 775 aa23.02■■□□□ 1.28
USP39-203ENST00000409470 ZNF507Q8TCN5 953 aa23.02■■□□□ 1.28
USP39-203ENST00000409470 TRPM4Q8TD43 1214 aa23.02■■□□□ 1.28
USP39-203ENST00000409470 WRNIP1Q96S55 665 aa23.02■■□□□ 1.28
USP39-203ENST00000409470 POLR3CQ9BUI4 534 aaPredicted RBP23.02■■□□□ 1.28
USP39-203ENST00000409470 RAVER2Q9HCJ3 691 aaKnown RBP23.02■■□□□ 1.28
USP39-203ENST00000409470 EMILIN3Q9NT22 766 aa23.02■■□□□ 1.28
USP39-203ENST00000409470 TBC1D7Q9P0N9 293 aa23.02■■□□□ 1.28
USP39-203ENST00000409470 EML1O00423 815 aa23.01■■□□□ 1.27
USP39-203ENST00000409470 GTF2F1P35269 517 aaKnown RBP eCLIP23.01■■□□□ 1.27
USP39-203ENST00000409470 TOGARAM2Q6ZUX3 1019 aa23.01■■□□□ 1.27
USP39-203ENST00000409470 SLC5A5Q92911 643 aa23.01■■□□□ 1.27
USP39-203ENST00000409470 ZFP91Q96JP5 570 aaPredicted RBP23.01■■□□□ 1.27
USP39-203ENST00000409470 NOC4LQ9BVI4 516 aaKnown RBP23.01■■□□□ 1.27
USP39-203ENST00000409470 ZHX3Q9H4I2 956 aa23.01■■□□□ 1.27
USP39-203ENST00000409470 RPAP3Q9H6T3 665 aaPredicted RBP23.01■■□□□ 1.27
USP39-203ENST00000409470 SLC38A10Q9HBR0 1119 aa23.01■■□□□ 1.27
USP39-203ENST00000409470 GPRC5DQ9NZD1 345 aa23.01■■□□□ 1.27
USP39-203ENST00000409470 NFIBO00712 420 aa23.01■■□□□ 1.27
USP39-203ENST00000409470 CHMP2AO43633 222 aa23.01■■□□□ 1.27
USP39-203ENST00000409470 GAS7O60861 476 aa23.01■■□□□ 1.27
USP39-203ENST00000409470 ARSHQ5FYA8 562 aa23.01■■□□□ 1.27
USP39-203ENST00000409470 OTOP1Q7RTM1 612 aa23.01■■□□□ 1.27
USP39-203ENST00000409470 REXO1L1PQ8IX06 675 aa23.01■■□□□ 1.27
USP39-203ENST00000409470 SYT2Q8N9I0 419 aaPredicted RBP23.01■■□□□ 1.27
USP39-203ENST00000409470 ZKSCAN4Q969J2 545 aaPredicted RBP23.01■■□□□ 1.27
USP39-203ENST00000409470 AS3MTQ9HBK9 375 aa23.01■■□□□ 1.27
USP39-203ENST00000409470 PPP1R9AQ9ULJ8 1098 aa23.01■■□□□ 1.27
USP39-203ENST00000409470 RABGAP1Q9Y3P9 1069 aa23.01■■□□□ 1.27
USP39-203ENST00000409470 PITPNM2Q9BZ72 1349 aa23■■□□□ 1.27
USP39-203ENST00000409470 SOWAHDA6NJG2 315 aa23■■□□□ 1.27
USP39-203ENST00000409470 PSMD10O75832 226 aa23■■□□□ 1.27
USP39-203ENST00000409470 TUBB4AP04350 444 aa23■■□□□ 1.27
USP39-203ENST00000409470 SETQ01105 290 aaPredicted RBP23■■□□□ 1.27
USP39-203ENST00000409470 CLEC4DQ8WXI8 215 aa23■■□□□ 1.27
USP39-203ENST00000409470 ZNF577Q9BSK1 485 aa23■■□□□ 1.27
USP39-203ENST00000409470 HOMER2Q9NSB8 354 aa23■■□□□ 1.27
USP39-203ENST00000409470 RGL1Q9NZL6 768 aa23■■□□□ 1.27
USP39-203ENST00000409470 ZNF112Q9UJU3 913 aa23■■□□□ 1.27
USP39-203ENST00000409470 DOCK1Q14185 1865 aa23■■□□□ 1.27
USP39-203ENST00000409470 SLC30A10Q6XR72 485 aa22.99■■□□□ 1.27
USP39-203ENST00000409470 SYT10Q6XYQ8 523 aa22.99■■□□□ 1.27
USP39-203ENST00000409470 ABHD10Q9NUJ1 306 aa22.99■■□□□ 1.27
USP39-203ENST00000409470 GGA3Q9NZ52 723 aa22.99■■□□□ 1.27
USP39-203ENST00000409470 ZBED4O75132 1171 aa22.99■■□□□ 1.27
USP39-203ENST00000409470 BACE1P56817 501 aa22.99■■□□□ 1.27
USP39-203ENST00000409470 TBC1D8BQ0IIM8 1120 aa22.99■■□□□ 1.27
USP39-203ENST00000409470 PPP2R5CQ13362 524 aa22.99■■□□□ 1.27
USP39-203ENST00000409470 MTF1Q14872 753 aa22.99■■□□□ 1.27
USP39-203ENST00000409470 GPC2Q8N158 579 aa22.99■■□□□ 1.27
USP39-203ENST00000409470 FZD1Q9UP38 647 aa22.99■■□□□ 1.27
USP39-203ENST00000409470 GOLGA6L9A6NEM1 432 aa22.98■■□□□ 1.27
USP39-203ENST00000409470 ARP10275 920 aa22.98■■□□□ 1.27
USP39-203ENST00000409470 LMNB1P20700 586 aa22.98■■□□□ 1.27
USP39-203ENST00000409470 KRT9P35527 623 aa22.98■■□□□ 1.27
USP39-203ENST00000409470 ZNF280CQ8ND82 737 aa22.98■■□□□ 1.27
USP39-203ENST00000409470 UPF1Q92900 1129 aaKnown RBP eCLIP22.98■■□□□ 1.27
USP39-203ENST00000409470 DESI2Q9BSY9 194 aa22.98■■□□□ 1.27
USP39-203ENST00000409470 BHMT2Q9H2M3 363 aa22.98■■□□□ 1.27
USP39-203ENST00000409470 COL20A1Q9P218 1284 aa22.98■■□□□ 1.27
USP39-203ENST00000409470 FRMD3A2A2Y4 597 aa22.98■■□□□ 1.27
USP39-203ENST00000409470 RNF225M0QZC1 329 aaPredicted RBP22.98■■□□□ 1.27
USP39-203ENST00000409470 KIF20AO95235 890 aa22.98■■□□□ 1.27
USP39-203ENST00000409470 PTPRAP18433 802 aa22.98■■□□□ 1.27
USP39-203ENST00000409470 GIT2Q14161 759 aa22.98■■□□□ 1.27
USP39-203ENST00000409470 CTTNQ14247 550 aaKnown RBP22.98■■□□□ 1.27
USP39-203ENST00000409470 FKBP15Q5T1M5 1219 aa22.98■■□□□ 1.27
USP39-203ENST00000409470 KRT26Q7Z3Y9 468 aa22.98■■□□□ 1.27
USP39-203ENST00000409470 TPH2Q8IWU9 490 aa22.98■■□□□ 1.27
USP39-203ENST00000409470 KCTD17Q8N5Z5 321 aa22.98■■□□□ 1.27
USP39-203ENST00000409470 MXRA8Q9BRK3 442 aa22.98■■□□□ 1.27
USP39-203ENST00000409470 WDR11Q9BZH6 1224 aa22.98■■□□□ 1.27
USP39-203ENST00000409470 TUFT1Q9NNX1 390 aa22.98■■□□□ 1.27
USP39-203ENST00000409470 PCDHA2Q9Y5H9 948 aa22.98■■□□□ 1.27
USP39-203ENST00000409470 EYA4O95677 639 aa22.97■■□□□ 1.27
USP39-203ENST00000409470 MUM1L1Q5H9M0 696 aa22.97■■□□□ 1.27
USP39-203ENST00000409470 FOXR2Q6PJQ5 311 aa22.97■■□□□ 1.27
USP39-203ENST00000409470 RAD9BQ6WBX8 426 aa22.97■■□□□ 1.27
USP39-203ENST00000409470 DYDC2Q96IM9 177 aa22.97■■□□□ 1.27
USP39-203ENST00000409470 PCMTD1Q96MG8 357 aaPredicted RBP22.97■■□□□ 1.27
USP39-203ENST00000409470 HSD17B14Q9BPX1 270 aa22.97■■□□□ 1.27
USP39-203ENST00000409470 FGFBP2Q9BYJ0 223 aa22.97■■□□□ 1.27
USP39-203ENST00000409470 CCDC175P0C221 793 aa22.96■■□□□ 1.27
USP39-203ENST00000409470 EPS15P42566 896 aa22.96■■□□□ 1.27
USP39-203ENST00000409470 ETF1P62495 437 aaKnown RBP22.96■■□□□ 1.27
USP39-203ENST00000409470 MIIPQ5JXC2 388 aa22.96■■□□□ 1.27
USP39-203ENST00000409470 TMTC1Q8IUR5 882 aa22.96■■□□□ 1.27
USP39-203ENST00000409470 NELFCDQ8IXH7 590 aa22.96■■□□□ 1.27
USP39-203ENST00000409470 REEP2Q9BRK0 252 aa22.96■■□□□ 1.27
USP39-203ENST00000409470 TEKT3Q9BXF9 490 aa22.96■■□□□ 1.27
USP39-203ENST00000409470 PNMA2Q9UL42 364 aa22.96■■□□□ 1.27
USP39-203ENST00000409470 LUC7L2Q9Y383 392 aaKnown RBP22.96■■□□□ 1.27
USP39-203ENST00000409470 ZHX2Q9Y6X8 837 aa22.96■■□□□ 1.27
USP39-203ENST00000409470 RPTORQ8N122 1335 aa22.96■■□□□ 1.27
USP39-203ENST00000409470 TTC26A0AVF1 554 aa22.96■■□□□ 1.27
USP39-203ENST00000409470 IPO5O00410 1097 aaKnown RBP22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms