RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 CCDC144BQ3MJ40 725 aa7.97□□□□□ -1.13
LIMA1-202ENST00000394943 RAET1EQ8TD07 263 aa7.97□□□□□ -1.13
LIMA1-202ENST00000394943 PCYT2Q99447 389 aa7.97□□□□□ -1.13
LIMA1-202ENST00000394943 POLR3CQ9BUI4 534 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-202ENST00000394943 GSTTP1A0A1W2PQM5 241 aa7.97□□□□□ -1.13
LIMA1-202ENST00000394943 GH1P01241 217 aa7.97□□□□□ -1.13
LIMA1-202ENST00000394943 PRKAR2AP13861 404 aaKnown RBP7.97□□□□□ -1.13
LIMA1-202ENST00000394943 NSMFQ6X4W1 530 aa7.97□□□□□ -1.13
LIMA1-202ENST00000394943 FAM184AQ8NB25 1140 aa7.97□□□□□ -1.13
LIMA1-202ENST00000394943 AK8Q96MA6 479 aa7.97□□□□□ -1.13
LIMA1-202ENST00000394943 C16orf70Q9BSU1 422 aa7.97□□□□□ -1.13
LIMA1-202ENST00000394943 HMX1Q9NP08 348 aaPredicted RBP7.97□□□□□ -1.13
LIMA1-202ENST00000394943 C11orf97A0A1B0GVM6 126 aaPredicted RBP7.96□□□□□ -1.13
LIMA1-202ENST00000394943 MMP3P08254 477 aa7.96□□□□□ -1.13
LIMA1-202ENST00000394943 KRT76Q01546 638 aa7.96□□□□□ -1.13
LIMA1-202ENST00000394943 SLC39A14Q15043 492 aa7.96□□□□□ -1.13
LIMA1-202ENST00000394943 SAFBQ15424 915 aaKnown RBP eCLIP7.96□□□□□ -1.13
LIMA1-202ENST00000394943 IPO9Q96P70 1041 aaKnown RBP7.96□□□□□ -1.13
LIMA1-202ENST00000394943 HSD17B14Q9BPX1 270 aa7.96□□□□□ -1.13
LIMA1-202ENST00000394943 NIFKQ9BYG3 293 aaKnown RBP7.96□□□□□ -1.13
LIMA1-202ENST00000394943 WDR11Q9BZH6 1224 aa7.96□□□□□ -1.13
LIMA1-202ENST00000394943 PDLIM7Q9NR12 457 aa7.96□□□□□ -1.13
LIMA1-202ENST00000394943 TCHHQ07283 1943 aa7.96□□□□□ -1.14
LIMA1-202ENST00000394943 FAM205CA6NFA0 338 aa7.96□□□□□ -1.14
LIMA1-202ENST00000394943 ARP10275 920 aa7.96□□□□□ -1.14
LIMA1-202ENST00000394943 CYP2B6P20813 491 aa7.96□□□□□ -1.14
LIMA1-202ENST00000394943 JAK3P52333 1124 aa7.96□□□□□ -1.14
LIMA1-202ENST00000394943 MTMR1Q13613 665 aa7.96□□□□□ -1.14
LIMA1-202ENST00000394943 TARBP2Q15633 366 aaKnown RBP7.96□□□□□ -1.14
LIMA1-202ENST00000394943 ANKRD33Q7Z3H0 272 aa7.96□□□□□ -1.14
LIMA1-202ENST00000394943 KAT2BQ92831 832 aa7.96□□□□□ -1.14
LIMA1-202ENST00000394943 FBXO2Q9UK22 296 aaPredicted RBP7.96□□□□□ -1.14
LIMA1-202ENST00000394943 SRPRBQ9Y5M8 271 aaKnown RBP7.96□□□□□ -1.14
LIMA1-202ENST00000394943 CAND2O75155 1236 aa7.96□□□□□ -1.14
LIMA1-202ENST00000394943 PPFIA4O75335 1185 aa7.96□□□□□ -1.14
LIMA1-202ENST00000394943 MCCD1P59942 119 aaPredicted RBP7.96□□□□□ -1.14
LIMA1-202ENST00000394943 TNFAIP2Q03169 654 aa7.96□□□□□ -1.14
LIMA1-202ENST00000394943 TMEM119Q4V9L6 283 aa7.96□□□□□ -1.14
LIMA1-202ENST00000394943 TTC38Q5R3I4 469 aa7.96□□□□□ -1.14
LIMA1-202ENST00000394943 CCDC82Q8N4S0 544 aa7.96□□□□□ -1.14
LIMA1-202ENST00000394943 TUFT1Q9NNX1 390 aa7.96□□□□□ -1.14
LIMA1-202ENST00000394943 HOMER2Q9NSB8 354 aa7.96□□□□□ -1.14
LIMA1-202ENST00000394943 DDX25Q9UHL0 483 aaKnown RBP7.96□□□□□ -1.14
LIMA1-202ENST00000394943 IGKV6-21A0A0C4DH24 114 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 MBLAC1A4D2B0 266 aaPredicted RBP7.95□□□□□ -1.14
LIMA1-202ENST00000394943 ATP9AO75110 1047 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 CCNE2O96020 404 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 CD4P01730 458 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 EIF2AK2P19525 551 aaKnown RBP7.95□□□□□ -1.14
LIMA1-202ENST00000394943 PURAQ00577 322 aaKnown RBP7.95□□□□□ -1.14
LIMA1-202ENST00000394943 JAKMIP3Q5VZ66 844 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 ZNF710Q8N1W2 664 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 LINC00301Q8NCQ3 95 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 FERMT2Q96AC1 680 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 TOX2Q96NM4 488 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 CTAGE1Q96RT6 745 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 CCSER1Q9C0I3 900 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 UNC93B1Q9H1C4 597 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 PDGFCQ9NRA1 345 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 TSKSQ9UJT2 592 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 NOL7Q9UMY1 257 aaKnown RBP7.95□□□□□ -1.14
LIMA1-202ENST00000394943 CNPY2Q9Y2B0 182 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 CCDC194A0A1B0GVG4 234 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 RAD21O60216 631 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 TDP2O95551 362 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 RPLP2P05387 115 aaKnown RBP7.95□□□□□ -1.14
LIMA1-202ENST00000394943 CYP2C19P33261 490 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 CPT1AP50416 773 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 LRRC41Q15345 812 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 EPHA7Q15375 998 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 INF2Q27J81 1249 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 FAM26DQ5JW98 314 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 NFRKBQ6P4R8 1299 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 PIK3AP1Q6ZUJ8 805 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 FBXO16Q8IX29 292 aaPredicted RBP7.95□□□□□ -1.14
LIMA1-202ENST00000394943 RASGRP4Q8TDF6 673 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 DBR1Q9UK59 544 aaKnown RBP7.95□□□□□ -1.14
LIMA1-202ENST00000394943 MTMR7Q9Y216 660 aa7.95□□□□□ -1.14
LIMA1-202ENST00000394943 MYH9P35579 1960 aaKnown RBP7.95□□□□□ -1.14
LIMA1-202ENST00000394943 ZBTB42B2RXF5 422 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 ELNP15502 786 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 LONP1P36776 959 aaKnown RBP7.94□□□□□ -1.14
LIMA1-202ENST00000394943 AXDND1Q5T1B0 1012 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-202ENST00000394943 C4orf19Q8IY42 314 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 HPSEQ9Y251 543 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 SUPT20HL2P0C7V6 817 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 ADCYAP1R1P41586 468 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 SLC4A3P48751 1232 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 MKRN4PQ13434 485 aaPredicted RBP7.94□□□□□ -1.14
LIMA1-202ENST00000394943 SLC9C1Q4G0N8 1177 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 PPP4R3CPQ6ZMV5 832 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 PLA2G4DQ86XP0 818 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 CYP2W1Q8TAV3 490 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 TMEM174Q8WUU8 243 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 MMTAG2Q9BU76 263 aaKnown RBP7.94□□□□□ -1.14
LIMA1-202ENST00000394943 TMEM60Q9H2L4 133 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 CEP131Q9UPN4 1083 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 PCDHB6Q9Y5E3 794 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 RALGAPA2Q2PPJ7 1873 aa7.94□□□□□ -1.14
LIMA1-202ENST00000394943 GRIN2DO15399 1336 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms