RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ERO1AQ96HE7 468 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 TMEM60Q9H2L4 133 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 ERLIN2O94905 339 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 NPEPPSP55786 919 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 PLA2G4FQ68DD2 849 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 C7orf31Q8N865 590 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 CDHR1Q96JP9 859 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 SNCAIPQ9Y6H5 919 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 PGK1P00558 417 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 PEX3P56589 373 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 SP3Q02447 781 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 TMEM132BQ14DG7 1078 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 LY6KQ17RY6 165 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 SPRYD7Q5W111 196 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 TYW1BQ6NUM6 668 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 CRACR2AQ9BSW2 395 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 A1CFQ9NQ94 594 aaKnown RBP11.4□□□□□ -0.58
COL6A3-205ENST00000392004 RMND1Q9NWS8 449 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 PNMA2Q9UL42 364 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 ZNF215Q9UL58 517 aaPredicted RBP11.4□□□□□ -0.58
COL6A3-205ENST00000392004 INPP5FQ9Y2H2 1132 aa11.4□□□□□ -0.58
COL6A3-205ENST00000392004 TAF1P21675 1872 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 HNRNPDLO14979 420 aaKnown RBP11.39□□□□□ -0.59
COL6A3-205ENST00000392004 SLU7O95391 586 aaKnown RBP11.39□□□□□ -0.59
COL6A3-205ENST00000392004 TERF2Q15554 542 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 ADALQ6DHV7 355 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 CD99L2Q8TCZ2 262 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 COPS5Q92905 334 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 HPS3Q969F9 1004 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 PRM3Q9NNZ6 103 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 AFDNP55196 1824 aaKnown RBP11.39□□□□□ -0.59
COL6A3-205ENST00000392004 DKC1O60832 514 aaKnown RBP eCLIP11.39□□□□□ -0.59
COL6A3-205ENST00000392004 UPP2O95045 317 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 ARP10275 920 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 FLT3LGP49771 235 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 BEX3Q00994 111 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 GRIN1Q05586 938 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 PPIL2Q13356 520 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 BMS1Q14692 1282 aaKnown RBP11.39□□□□□ -0.59
COL6A3-205ENST00000392004 TEX35Q5T0J7 233 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 TMC6Q7Z403 805 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 LRRC71Q8N4P6 559 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 SPAG5Q96R06 1193 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 RIC8AQ9NPQ8 531 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 KCNH7Q9NS40 1196 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 AGTPBP1Q9UPW5 1226 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 PCDHA5Q9Y5H7 936 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 ITGB4P16144 1822 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 MYBP10242 640 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 TNNI1P19237 187 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 TRIM21P19474 475 aaKnown RBP11.39□□□□□ -0.59
COL6A3-205ENST00000392004 RHPN2Q8IUC4 686 aa11.39□□□□□ -0.59
COL6A3-205ENST00000392004 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.39□□□□□ -0.59
COL6A3-205ENST00000392004 LARP4BQ92615 738 aaKnown RBP11.39□□□□□ -0.59
COL6A3-205ENST00000392004 LARSQ9P2J5 1176 aaKnown RBP11.39□□□□□ -0.59
COL6A3-205ENST00000392004 SPDYE16A6NNV3 312 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-205ENST00000392004 PSAPP07602 524 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 RAPGEF1Q13905 1077 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 CSGALNACT2Q8N6G5 542 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 DRC1Q96MC2 740 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 NT5C3AQ9H0P0 336 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 JPH1Q9HDC5 661 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-205ENST00000392004 PANK4Q9NVE7 773 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 KCNH4Q9UQ05 1017 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 GOLGA8IPA6NC78 632 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 SPDYE5A6NIY4 337 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 ASB14A6NK59 587 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 CCDC85CA6NKD9 419 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 GOLGA8JA6NMD2 632 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 SLFN14P0C7P3 912 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 RARBP10826 455 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 LIG4P49917 911 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 CETN1Q12798 172 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 AP3B2Q13367 1082 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 EARS2Q5JPH6 523 aaKnown RBP11.38□□□□□ -0.59
COL6A3-205ENST00000392004 THNSL1Q8IYQ7 743 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 PLCD3Q8N3E9 789 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 SGIP1Q9BQI5 828 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 PYM1Q9BRP8 204 aaKnown RBP11.38□□□□□ -0.59
COL6A3-205ENST00000392004 ARGLU1Q9NWB6 273 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-205ENST00000392004 PARP2Q9UGN5 583 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 TMEM150BA6NC51 233 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 SLC25A27O95847 323 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 CDC25BP30305 580 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 GCLCP48506 637 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-205ENST00000392004 TNFAIP2Q03169 654 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 ELF2Q15723 593 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 LRRC8AQ8IWT6 810 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 MB21D1Q8N884 522 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 SYTL5Q8TDW5 730 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-205ENST00000392004 BRI3BPQ8WY22 251 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 TMEM143Q96AN5 459 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 LENG1Q96BZ8 264 aaPredicted RBP11.38□□□□□ -0.59
COL6A3-205ENST00000392004 GMCL1Q96IK5 515 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 LXNQ9BS40 222 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 ADCYAP1R1P41586 468 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 GABPAQ06546 454 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 TICAM2Q86XR7 235 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 CCDC150Q8NCX0 1101 aa11.38□□□□□ -0.59
COL6A3-205ENST00000392004 SLC9A2Q9UBY0 812 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms